Strain Fitness in Serratia liquefaciens MT49 around IAI46_01955

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01945 and IAI46_01950 are separated by 123 nucleotidesIAI46_01950 and IAI46_01955 are separated by 255 nucleotidesIAI46_01955 and IAI46_01960 are separated by 128 nucleotides IAI46_01945: IAI46_01945 - tRNA pseudouridine(55) synthase TruB, at 417,003 to 417,947 _01945 IAI46_01950: IAI46_01950 - 30S ribosomal protein S15, at 418,071 to 418,340 _01950 IAI46_01955: IAI46_01955 - polyribonucleotide nucleotidyltransferase, at 418,596 to 420,713 _01955 IAI46_01960: IAI46_01960 - lipoprotein NlpI, at 420,842 to 421,726 _01960 Position (kb) 418 419 420 421Strain fitness (log2 ratio) -2 -1 0 1 2 3at 417.625 kb on - strand, within IAI46_01945at 417.795 kb on - strand, within IAI46_01945at 417.795 kb on - strand, within IAI46_01945at 417.844 kb on + strand, within IAI46_01945at 417.844 kb on + strand, within IAI46_01945at 417.844 kb on + strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.845 kb on - strand, within IAI46_01945at 417.848 kb on + strand, within IAI46_01945at 417.848 kb on + strand, within IAI46_01945at 417.848 kb on + strand, within IAI46_01945at 417.849 kb on - strand, within IAI46_01945at 417.890 kb on + strandat 418.410 kb on + strandat 418.415 kb on + strandat 418.494 kb on + strandat 418.495 kb on - strandat 418.507 kb on + strandat 418.508 kb on - strandat 418.521 kb on + strandat 418.522 kb on - strandat 418.564 kb on + strandat 418.565 kb on - strandat 418.578 kb on + strandat 418.583 kb on + strandat 418.584 kb on - strandat 418.591 kb on + strandat 418.592 kb on - strandat 418.637 kb on + strandat 418.638 kb on - strandat 418.638 kb on - strandat 418.646 kb on + strandat 418.658 kb on + strandat 418.659 kb on - strandat 418.726 kb on + strandat 418.726 kb on + strandat 418.727 kb on - strandat 418.782 kb on + strandat 418.793 kb on + strandat 418.797 kb on + strandat 419.061 kb on + strand, within IAI46_01955at 419.061 kb on + strand, within IAI46_01955at 419.076 kb on + strand, within IAI46_01955at 419.077 kb on - strand, within IAI46_01955at 419.282 kb on + strand, within IAI46_01955at 419.282 kb on + strand, within IAI46_01955at 419.282 kb on + strand, within IAI46_01955at 419.368 kb on - strand, within IAI46_01955at 419.368 kb on - strand, within IAI46_01955at 419.593 kb on + strand, within IAI46_01955at 419.651 kb on + strand, within IAI46_01955at 419.733 kb on + strand, within IAI46_01955at 419.749 kb on - strand, within IAI46_01955at 419.773 kb on + strand, within IAI46_01955at 419.773 kb on + strand, within IAI46_01955at 419.773 kb on + strand, within IAI46_01955at 419.773 kb on + strand, within IAI46_01955at 419.773 kb on + strand, within IAI46_01955at 419.774 kb on - strand, within IAI46_01955at 419.774 kb on - strand, within IAI46_01955at 419.783 kb on + strand, within IAI46_01955at 419.783 kb on + strand, within IAI46_01955at 419.827 kb on + strand, within IAI46_01955at 419.828 kb on - strand, within IAI46_01955at 419.835 kb on - strand, within IAI46_01955at 419.835 kb on - strand, within IAI46_01955at 419.863 kb on - strand, within IAI46_01955at 419.863 kb on - strand, within IAI46_01955at 420.099 kb on - strand, within IAI46_01955at 420.101 kb on + strand, within IAI46_01955at 420.215 kb on + strand, within IAI46_01955at 420.236 kb on + strand, within IAI46_01955at 420.236 kb on + strand, within IAI46_01955at 420.236 kb on + strand, within IAI46_01955at 420.257 kb on + strand, within IAI46_01955at 420.257 kb on + strand, within IAI46_01955at 420.257 kb on + strand, within IAI46_01955at 420.305 kb on + strand, within IAI46_01955at 420.351 kb on - strand, within IAI46_01955at 420.351 kb on - strand, within IAI46_01955at 420.351 kb on - strand, within IAI46_01955at 420.351 kb on - strand, within IAI46_01955at 420.374 kb on + strand, within IAI46_01955at 420.374 kb on + strand, within IAI46_01955at 420.374 kb on + strand, within IAI46_01955at 420.375 kb on - strand, within IAI46_01955at 420.392 kb on + strand, within IAI46_01955at 420.392 kb on + strand, within IAI46_01955at 420.465 kb on - strand, within IAI46_01955at 420.469 kb on - strand, within IAI46_01955at 420.469 kb on - strand, within IAI46_01955at 420.469 kb on - strand, within IAI46_01955at 420.476 kb on + strand, within IAI46_01955at 420.483 kb on - strand, within IAI46_01955at 420.527 kb on + strandat 420.527 kb on + strandat 420.528 kb on - strandat 420.528 kb on - strandat 420.588 kb on + strandat 420.589 kb on - strandat 420.589 kb on - strandat 420.610 kb on + strandat 420.622 kb on + strandat 420.711 kb on + strandat 420.712 kb on - strandat 420.719 kb on + strandat 420.720 kb on - strandat 420.720 kb on - strandat 420.729 kb on + strandat 420.787 kb on + strandat 420.787 kb on + strandat 420.788 kb on - strandat 420.788 kb on - strandat 420.791 kb on - strandat 420.866 kb on + strandat 420.866 kb on + strandat 420.866 kb on + strandat 420.867 kb on - strandat 420.990 kb on + strand, within IAI46_01960at 420.991 kb on - strand, within IAI46_01960at 421.036 kb on - strand, within IAI46_01960at 421.036 kb on - strand, within IAI46_01960at 421.037 kb on + strand, within IAI46_01960at 421.055 kb on + strand, within IAI46_01960at 421.056 kb on - strand, within IAI46_01960at 421.123 kb on + strand, within IAI46_01960at 421.123 kb on + strand, within IAI46_01960at 421.123 kb on + strand, within IAI46_01960at 421.142 kb on + strand, within IAI46_01960at 421.142 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.154 kb on + strand, within IAI46_01960at 421.155 kb on - strand, within IAI46_01960at 421.155 kb on - strand, within IAI46_01960at 421.187 kb on + strand, within IAI46_01960at 421.188 kb on - strand, within IAI46_01960at 421.188 kb on - strand, within IAI46_01960at 421.209 kb on + strand, within IAI46_01960at 421.209 kb on + strand, within IAI46_01960at 421.210 kb on - strand, within IAI46_01960at 421.210 kb on - strand, within IAI46_01960at 421.227 kb on - strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.262 kb on + strand, within IAI46_01960at 421.263 kb on - strand, within IAI46_01960at 421.265 kb on + strand, within IAI46_01960at 421.310 kb on + strand, within IAI46_01960at 421.311 kb on - strand, within IAI46_01960at 421.352 kb on + strand, within IAI46_01960at 421.392 kb on + strand, within IAI46_01960at 421.392 kb on + strand, within IAI46_01960at 421.444 kb on + strand, within IAI46_01960at 421.444 kb on + strand, within IAI46_01960at 421.444 kb on + strand, within IAI46_01960at 421.457 kb on + strand, within IAI46_01960at 421.556 kb on + strand, within IAI46_01960at 421.556 kb on + strand, within IAI46_01960at 421.557 kb on - strand, within IAI46_01960at 421.557 kb on - strand, within IAI46_01960at 421.560 kb on + strand, within IAI46_01960at 421.561 kb on - strand, within IAI46_01960at 421.564 kb on + strand, within IAI46_01960at 421.564 kb on + strand, within IAI46_01960at 421.565 kb on - strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.571 kb on + strand, within IAI46_01960at 421.575 kb on + strand, within IAI46_01960at 421.575 kb on + strand, within IAI46_01960at 421.575 kb on + strand, within IAI46_01960at 421.576 kb on - strand, within IAI46_01960at 421.576 kb on - strand, within IAI46_01960at 421.639 kb on + strandat 421.639 kb on + strandat 421.658 kb on + strandat 421.683 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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417,625 - IAI46_01945 0.66 +0.9
417,795 - IAI46_01945 0.84 +0.5
417,795 - IAI46_01945 0.84 +0.2
417,844 + IAI46_01945 0.89 -0.2
417,844 + IAI46_01945 0.89 -0.7
417,844 + IAI46_01945 0.89 +0.7
417,845 - IAI46_01945 0.89 +0.1
417,845 - IAI46_01945 0.89 -0.1
417,845 - IAI46_01945 0.89 -0.3
417,845 - IAI46_01945 0.89 +0.3
417,845 - IAI46_01945 0.89 +0.1
417,845 - IAI46_01945 0.89 +0.7
417,845 - IAI46_01945 0.89 +0.5
417,845 - IAI46_01945 0.89 +0.8
417,848 + IAI46_01945 0.89 -0.7
417,848 + IAI46_01945 0.89 -1.2
417,848 + IAI46_01945 0.89 +0.1
417,849 - IAI46_01945 0.90 -0.7
417,890 + +0.5
418,410 + +0.9
418,415 + +0.4
418,494 + -0.1
418,495 - -0.1
418,507 + +0.9
418,508 - -0.3
418,521 + -0.3
418,522 - +0.0
418,564 + +1.5
418,565 - +0.7
418,578 + -0.3
418,583 + -0.2
418,584 - -1.3
418,591 + -2.1
418,592 - -1.8
418,637 + +2.1
418,638 - -1.3
418,638 - -0.9
418,646 + -2.4
418,658 + -0.3
418,659 - +0.5
418,726 + +0.1
418,726 + -0.3
418,727 - +0.5
418,782 + -0.1
418,793 + +1.5
418,797 + -1.1
419,061 + IAI46_01955 0.22 +1.1
419,061 + IAI46_01955 0.22 +0.1
419,076 + IAI46_01955 0.23 +3.0
419,077 - IAI46_01955 0.23 -1.3
419,282 + IAI46_01955 0.32 -1.9
419,282 + IAI46_01955 0.32 -1.0
419,282 + IAI46_01955 0.32 +0.5
419,368 - IAI46_01955 0.36 -1.0
419,368 - IAI46_01955 0.36 -1.3
419,593 + IAI46_01955 0.47 +1.1
419,651 + IAI46_01955 0.50 -0.9
419,733 + IAI46_01955 0.54 +0.3
419,749 - IAI46_01955 0.54 -0.9
419,773 + IAI46_01955 0.56 +0.9
419,773 + IAI46_01955 0.56 +0.5
419,773 + IAI46_01955 0.56 -1.0
419,773 + IAI46_01955 0.56 -1.0
419,773 + IAI46_01955 0.56 -1.1
419,774 - IAI46_01955 0.56 +1.7
419,774 - IAI46_01955 0.56 +1.3
419,783 + IAI46_01955 0.56 -0.4
419,783 + IAI46_01955 0.56 -1.3
419,827 + IAI46_01955 0.58 -0.9
419,828 - IAI46_01955 0.58 -1.0
419,835 - IAI46_01955 0.58 +1.5
419,835 - IAI46_01955 0.58 +0.5
419,863 - IAI46_01955 0.60 -1.4
419,863 - IAI46_01955 0.60 +0.4
420,099 - IAI46_01955 0.71 -1.1
420,101 + IAI46_01955 0.71 +0.5
420,215 + IAI46_01955 0.76 +0.9
420,236 + IAI46_01955 0.77 -0.5
420,236 + IAI46_01955 0.77 +0.6
420,236 + IAI46_01955 0.77 -0.0
420,257 + IAI46_01955 0.78 -0.3
420,257 + IAI46_01955 0.78 -0.1
420,257 + IAI46_01955 0.78 -0.9
420,305 + IAI46_01955 0.81 -0.6
420,351 - IAI46_01955 0.83 +1.5
420,351 - IAI46_01955 0.83 -0.3
420,351 - IAI46_01955 0.83 +0.9
420,351 - IAI46_01955 0.83 -0.9
420,374 + IAI46_01955 0.84 -0.9
420,374 + IAI46_01955 0.84 -0.3
420,374 + IAI46_01955 0.84 -0.1
420,375 - IAI46_01955 0.84 -0.5
420,392 + IAI46_01955 0.85 -0.4
420,392 + IAI46_01955 0.85 +1.0
420,465 - IAI46_01955 0.88 -0.1
420,469 - IAI46_01955 0.88 -0.5
420,469 - IAI46_01955 0.88 -1.5
420,469 - IAI46_01955 0.88 +0.7
420,476 + IAI46_01955 0.89 +0.7
420,483 - IAI46_01955 0.89 +0.5
420,527 + +0.3
420,527 + +1.5
420,528 - +1.5
420,528 - +0.5
420,588 + +0.3
420,589 - -0.5
420,589 - +0.9
420,610 + -0.7
420,622 + +1.2
420,711 + +0.3
420,712 - -0.1
420,719 + -0.3
420,720 - +0.3
420,720 - -2.3
420,729 + -0.3
420,787 + -0.6
420,787 + -0.9
420,788 - -0.9
420,788 - -1.7
420,791 - -0.6
420,866 + -1.2
420,866 + -0.9
420,866 + -0.4
420,867 - +0.8
420,990 + IAI46_01960 0.17 -0.7
420,991 - IAI46_01960 0.17 +0.1
421,036 - IAI46_01960 0.22 +0.8
421,036 - IAI46_01960 0.22 -0.5
421,037 + IAI46_01960 0.22 +0.7
421,055 + IAI46_01960 0.24 -0.0
421,056 - IAI46_01960 0.24 +0.5
421,123 + IAI46_01960 0.32 -0.5
421,123 + IAI46_01960 0.32 -0.5
421,123 + IAI46_01960 0.32 -0.9
421,142 + IAI46_01960 0.34 -1.7
421,142 + IAI46_01960 0.34 +0.2
421,154 + IAI46_01960 0.35 -0.5
421,154 + IAI46_01960 0.35 -0.0
421,154 + IAI46_01960 0.35 +0.5
421,154 + IAI46_01960 0.35 +0.5
421,155 - IAI46_01960 0.35 -0.5
421,155 - IAI46_01960 0.35 -0.9
421,187 + IAI46_01960 0.39 -0.3
421,188 - IAI46_01960 0.39 +0.5
421,188 - IAI46_01960 0.39 -0.5
421,209 + IAI46_01960 0.41 -0.5
421,209 + IAI46_01960 0.41 -0.4
421,210 - IAI46_01960 0.42 +1.1
421,210 - IAI46_01960 0.42 +0.5
421,227 - IAI46_01960 0.44 +0.5
421,262 + IAI46_01960 0.47 +0.5
421,262 + IAI46_01960 0.47 -1.0
421,262 + IAI46_01960 0.47 -0.1
421,262 + IAI46_01960 0.47 -0.5
421,262 + IAI46_01960 0.47 +0.5
421,263 - IAI46_01960 0.48 -0.5
421,265 + IAI46_01960 0.48 -0.3
421,310 + IAI46_01960 0.53 +0.5
421,311 - IAI46_01960 0.53 -1.2
421,352 + IAI46_01960 0.58 -1.1
421,392 + IAI46_01960 0.62 -1.2
421,392 + IAI46_01960 0.62 -0.8
421,444 + IAI46_01960 0.68 -0.1
421,444 + IAI46_01960 0.68 +0.5
421,444 + IAI46_01960 0.68 -1.8
421,457 + IAI46_01960 0.69 -0.2
421,556 + IAI46_01960 0.81 -1.4
421,556 + IAI46_01960 0.81 -0.3
421,557 - IAI46_01960 0.81 +0.1
421,557 - IAI46_01960 0.81 +0.1
421,560 + IAI46_01960 0.81 +0.6
421,561 - IAI46_01960 0.81 +0.5
421,564 + IAI46_01960 0.82 -0.4
421,564 + IAI46_01960 0.82 -1.1
421,565 - IAI46_01960 0.82 -0.5
421,571 + IAI46_01960 0.82 +0.9
421,571 + IAI46_01960 0.82 +1.0
421,571 + IAI46_01960 0.82 +0.0
421,571 + IAI46_01960 0.82 -0.8
421,575 + IAI46_01960 0.83 -0.5
421,575 + IAI46_01960 0.83 +0.1
421,575 + IAI46_01960 0.83 -1.4
421,576 - IAI46_01960 0.83 -0.1
421,576 - IAI46_01960 0.83 -0.2
421,639 + -0.8
421,639 + -0.5
421,658 + -1.7
421,683 + +0.2

Or see this region's nucleotide sequence