Strain Fitness in Serratia liquefaciens MT49 around IAI46_01780

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_01775 and IAI46_01780 are separated by 2 nucleotidesIAI46_01780 and IAI46_01785 are separated by 52 nucleotidesIAI46_01785 and IAI46_01790 are separated by 256 nucleotides IAI46_01775: IAI46_01775 - translocation/assembly module TamB, at 384,040 to 387,858 _01775 IAI46_01780: IAI46_01780 - gamma-glutamylcyclotransferase, at 387,861 to 388,208 _01780 IAI46_01785: IAI46_01785 - inorganic diphosphatase, at 388,261 to 388,791 _01785 IAI46_01790: IAI46_01790 - Tar ligand binding domain-containing protein, at 389,048 to 390,601 _01790 Position (kb) 387 388 389Strain fitness (log2 ratio) -2 -1 0 1 2at 386.862 kb on + strand, within IAI46_01775at 386.863 kb on - strand, within IAI46_01775at 386.863 kb on - strand, within IAI46_01775at 386.913 kb on + strand, within IAI46_01775at 386.914 kb on - strand, within IAI46_01775at 386.914 kb on - strand, within IAI46_01775at 386.932 kb on - strand, within IAI46_01775at 387.052 kb on - strand, within IAI46_01775at 387.212 kb on + strand, within IAI46_01775at 387.310 kb on + strand, within IAI46_01775at 387.310 kb on + strand, within IAI46_01775at 387.310 kb on + strand, within IAI46_01775at 387.310 kb on + strand, within IAI46_01775at 387.311 kb on - strand, within IAI46_01775at 387.381 kb on + strand, within IAI46_01775at 387.382 kb on - strand, within IAI46_01775at 387.382 kb on - strand, within IAI46_01775at 387.397 kb on - strand, within IAI46_01775at 387.514 kb on + strandat 387.515 kb on - strandat 387.558 kb on + strandat 387.559 kb on - strandat 387.579 kb on - strandat 387.641 kb on + strandat 387.642 kb on - strandat 387.660 kb on + strandat 387.703 kb on + strandat 387.703 kb on + strandat 387.719 kb on + strandat 387.719 kb on + strandat 387.720 kb on - strandat 387.720 kb on - strandat 387.725 kb on + strandat 387.726 kb on - strandat 387.789 kb on + strandat 387.790 kb on - strandat 387.790 kb on - strandat 387.796 kb on + strandat 387.869 kb on - strandat 387.886 kb on + strandat 388.013 kb on - strand, within IAI46_01780at 388.027 kb on - strand, within IAI46_01780at 388.086 kb on + strand, within IAI46_01780at 388.087 kb on - strand, within IAI46_01780at 388.088 kb on + strand, within IAI46_01780at 388.088 kb on + strand, within IAI46_01780at 388.089 kb on - strand, within IAI46_01780at 388.089 kb on - strand, within IAI46_01780at 388.131 kb on + strand, within IAI46_01780at 388.140 kb on - strand, within IAI46_01780at 388.140 kb on - strand, within IAI46_01780at 388.140 kb on - strand, within IAI46_01780at 388.140 kb on - strand, within IAI46_01780at 388.169 kb on + strand, within IAI46_01780at 388.241 kb on + strandat 388.262 kb on + strandat 388.262 kb on + strandat 388.263 kb on - strandat 388.913 kb on - strandat 388.930 kb on + strandat 388.966 kb on + strandat 388.966 kb on + strandat 388.966 kb on + strandat 388.967 kb on - strandat 388.970 kb on - strandat 389.000 kb on + strandat 389.001 kb on - strandat 389.001 kb on - strandat 389.009 kb on + strandat 389.010 kb on - strandat 389.010 kb on - strandat 389.010 kb on - strandat 389.010 kb on - strandat 389.013 kb on + strandat 389.014 kb on - strandat 389.014 kb on - strandat 389.025 kb on - strandat 389.052 kb on + strandat 389.167 kb on - strandat 389.167 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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386,862 + IAI46_01775 0.74 +0.2
386,863 - IAI46_01775 0.74 -0.0
386,863 - IAI46_01775 0.74 -0.2
386,913 + IAI46_01775 0.75 +0.0
386,914 - IAI46_01775 0.75 +0.1
386,914 - IAI46_01775 0.75 -0.4
386,932 - IAI46_01775 0.76 +0.9
387,052 - IAI46_01775 0.79 +0.5
387,212 + IAI46_01775 0.83 +0.1
387,310 + IAI46_01775 0.86 +1.5
387,310 + IAI46_01775 0.86 -0.0
387,310 + IAI46_01775 0.86 -0.7
387,310 + IAI46_01775 0.86 -0.5
387,311 - IAI46_01775 0.86 +0.5
387,381 + IAI46_01775 0.87 -0.6
387,382 - IAI46_01775 0.88 +0.3
387,382 - IAI46_01775 0.88 +0.3
387,397 - IAI46_01775 0.88 -0.5
387,514 + -0.3
387,515 - +0.9
387,558 + +0.0
387,559 - +0.8
387,579 - +0.7
387,641 + +0.8
387,642 - +0.5
387,660 + +0.3
387,703 + -0.6
387,703 + +1.1
387,719 + +0.1
387,719 + -0.1
387,720 - +0.3
387,720 - +0.6
387,725 + +0.0
387,726 - +0.6
387,789 + -0.1
387,790 - +0.1
387,790 - -0.9
387,796 + -0.4
387,869 - +0.6
387,886 + +1.5
388,013 - IAI46_01780 0.44 +0.6
388,027 - IAI46_01780 0.48 +0.8
388,086 + IAI46_01780 0.65 +0.8
388,087 - IAI46_01780 0.65 -1.8
388,088 + IAI46_01780 0.65 +0.9
388,088 + IAI46_01780 0.65 +0.7
388,089 - IAI46_01780 0.66 +1.3
388,089 - IAI46_01780 0.66 +0.3
388,131 + IAI46_01780 0.78 +2.1
388,140 - IAI46_01780 0.80 +0.6
388,140 - IAI46_01780 0.80 +0.2
388,140 - IAI46_01780 0.80 +0.9
388,140 - IAI46_01780 0.80 +1.0
388,169 + IAI46_01780 0.89 -0.0
388,241 + -0.0
388,262 + +0.2
388,262 + +0.0
388,263 - +0.1
388,913 - -0.3
388,930 + +0.0
388,966 + +0.3
388,966 + +0.9
388,966 + -0.1
388,967 - +0.8
388,970 - -0.1
389,000 + +0.2
389,001 - -0.1
389,001 - +0.5
389,009 + +0.0
389,010 - +0.5
389,010 - -0.8
389,010 - -0.4
389,010 - -0.1
389,013 + +0.2
389,014 - +0.5
389,014 - -0.8
389,025 - -0.4
389,052 + -0.7
389,167 - +0.8
389,167 - -0.5

Or see this region's nucleotide sequence