Strain Fitness in Serratia liquefaciens MT49 around IAI46_00965

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI46_00960 and IAI46_00965 are separated by 283 nucleotidesIAI46_00965 and IAI46_00970 overlap by 4 nucleotides IAI46_00960: IAI46_00960 - branched-chain amino acid ABC transporter substrate-binding protein, at 214,993 to 216,108 _00960 IAI46_00965: IAI46_00965 - high-affinity branched-chain amino acid ABC transporter permease LivH, at 216,392 to 217,318 _00965 IAI46_00970: IAI46_00970 - high-affinity branched-chain amino acid ABC transporter permease LivM, at 217,315 to 218,598 _00970 Position (kb) 216 217 218Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 215.412 kb on + strand, within IAI46_00960at 215.412 kb on + strand, within IAI46_00960at 215.412 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.455 kb on + strand, within IAI46_00960at 215.456 kb on - strand, within IAI46_00960at 215.513 kb on - strand, within IAI46_00960at 215.586 kb on + strand, within IAI46_00960at 215.656 kb on + strand, within IAI46_00960at 215.656 kb on + strand, within IAI46_00960at 215.730 kb on + strand, within IAI46_00960at 215.770 kb on - strand, within IAI46_00960at 215.812 kb on - strand, within IAI46_00960at 215.812 kb on - strand, within IAI46_00960at 215.819 kb on - strand, within IAI46_00960at 215.819 kb on - strand, within IAI46_00960at 215.859 kb on + strand, within IAI46_00960at 215.905 kb on + strand, within IAI46_00960at 215.905 kb on + strand, within IAI46_00960at 216.046 kb on - strandat 216.106 kb on + strandat 216.107 kb on - strandat 216.110 kb on - strandat 216.110 kb on - strandat 216.111 kb on + strandat 216.111 kb on + strandat 216.111 kb on + strandat 216.111 kb on + strandat 216.112 kb on - strandat 216.168 kb on + strandat 216.168 kb on + strandat 216.168 kb on + strandat 216.169 kb on - strandat 216.169 kb on - strandat 216.173 kb on + strandat 216.174 kb on - strandat 216.176 kb on + strandat 216.176 kb on + strandat 216.176 kb on + strandat 216.176 kb on + strandat 216.177 kb on - strandat 216.177 kb on - strandat 216.192 kb on + strandat 216.193 kb on - strandat 216.208 kb on - strandat 216.232 kb on + strandat 216.233 kb on - strandat 216.234 kb on + strandat 216.245 kb on - strandat 216.280 kb on - strandat 216.364 kb on + strandat 216.366 kb on + strandat 216.366 kb on + strandat 216.366 kb on + strandat 216.366 kb on + strandat 216.367 kb on - strandat 216.386 kb on + strandat 216.387 kb on - strandat 216.391 kb on + strandat 216.391 kb on + strandat 216.391 kb on + strandat 216.391 kb on + strandat 216.391 kb on + strandat 216.391 kb on + strandat 216.392 kb on - strandat 216.392 kb on - strandat 216.392 kb on - strandat 216.392 kb on - strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.455 kb on + strandat 216.456 kb on - strandat 216.456 kb on - strandat 216.456 kb on - strandat 216.456 kb on - strandat 216.476 kb on + strandat 216.488 kb on + strand, within IAI46_00965at 216.488 kb on + strand, within IAI46_00965at 216.488 kb on + strand, within IAI46_00965at 216.489 kb on - strand, within IAI46_00965at 216.489 kb on - strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.530 kb on + strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.531 kb on - strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.532 kb on + strand, within IAI46_00965at 216.533 kb on - strand, within IAI46_00965at 216.533 kb on - strand, within IAI46_00965at 216.533 kb on - strand, within IAI46_00965at 216.533 kb on - strand, within IAI46_00965at 216.533 kb on - strand, within IAI46_00965at 216.533 kb on - strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.545 kb on + strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.546 kb on - strand, within IAI46_00965at 216.557 kb on - strand, within IAI46_00965at 216.650 kb on + strand, within IAI46_00965at 216.726 kb on + strand, within IAI46_00965at 216.752 kb on + strand, within IAI46_00965at 216.847 kb on + strand, within IAI46_00965at 216.848 kb on - strand, within IAI46_00965at 216.868 kb on + strand, within IAI46_00965at 216.868 kb on + strand, within IAI46_00965at 216.869 kb on - strand, within IAI46_00965at 216.928 kb on + strand, within IAI46_00965at 216.929 kb on - strand, within IAI46_00965at 217.054 kb on - strand, within IAI46_00965at 217.070 kb on + strand, within IAI46_00965at 217.070 kb on + strand, within IAI46_00965at 217.071 kb on - strand, within IAI46_00965at 217.071 kb on - strand, within IAI46_00965at 217.071 kb on - strand, within IAI46_00965at 217.089 kb on - strand, within IAI46_00965at 217.089 kb on - strand, within IAI46_00965at 217.090 kb on + strand, within IAI46_00965at 217.179 kb on + strand, within IAI46_00965at 217.180 kb on - strand, within IAI46_00965at 217.228 kb on + strandat 217.228 kb on + strandat 217.228 kb on + strandat 217.228 kb on + strandat 217.229 kb on - strandat 217.229 kb on - strandat 217.315 kb on - strandat 217.545 kb on - strand, within IAI46_00970at 217.547 kb on + strand, within IAI46_00970at 217.646 kb on + strand, within IAI46_00970at 217.647 kb on - strand, within IAI46_00970at 217.672 kb on + strand, within IAI46_00970at 217.673 kb on - strand, within IAI46_00970at 217.673 kb on - strand, within IAI46_00970at 217.762 kb on + strand, within IAI46_00970at 217.763 kb on - strand, within IAI46_00970at 217.763 kb on - strand, within IAI46_00970at 217.768 kb on + strand, within IAI46_00970at 217.768 kb on + strand, within IAI46_00970at 217.768 kb on + strand, within IAI46_00970at 217.768 kb on + strand, within IAI46_00970at 217.769 kb on - strand, within IAI46_00970at 217.786 kb on + strand, within IAI46_00970at 217.786 kb on + strand, within IAI46_00970at 217.787 kb on - strand, within IAI46_00970at 217.789 kb on + strand, within IAI46_00970at 217.790 kb on - strand, within IAI46_00970at 217.888 kb on + strand, within IAI46_00970at 217.889 kb on - strand, within IAI46_00970at 218.055 kb on + strand, within IAI46_00970at 218.056 kb on - strand, within IAI46_00970at 218.056 kb on - strand, within IAI46_00970at 218.075 kb on - strand, within IAI46_00970at 218.075 kb on - strand, within IAI46_00970at 218.259 kb on + strand, within IAI46_00970at 218.259 kb on + strand, within IAI46_00970at 218.259 kb on + strand, within IAI46_00970

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
remove
215,412 + IAI46_00960 0.38 -0.1
215,412 + IAI46_00960 0.38 +0.7
215,412 + IAI46_00960 0.38 -0.3
215,455 + IAI46_00960 0.41 -1.4
215,455 + IAI46_00960 0.41 +0.3
215,455 + IAI46_00960 0.41 -0.3
215,455 + IAI46_00960 0.41 +0.0
215,455 + IAI46_00960 0.41 +0.0
215,455 + IAI46_00960 0.41 +0.0
215,455 + IAI46_00960 0.41 +0.9
215,456 - IAI46_00960 0.41 +0.5
215,513 - IAI46_00960 0.47 -0.9
215,586 + IAI46_00960 0.53 +0.4
215,656 + IAI46_00960 0.59 -0.4
215,656 + IAI46_00960 0.59 -0.6
215,730 + IAI46_00960 0.66 +0.3
215,770 - IAI46_00960 0.70 -0.1
215,812 - IAI46_00960 0.73 -0.4
215,812 - IAI46_00960 0.73 -0.5
215,819 - IAI46_00960 0.74 +0.3
215,819 - IAI46_00960 0.74 -0.2
215,859 + IAI46_00960 0.78 +0.3
215,905 + IAI46_00960 0.82 -0.3
215,905 + IAI46_00960 0.82 +1.5
216,046 - +0.3
216,106 + +0.3
216,107 - -0.1
216,110 - +1.3
216,110 - +0.3
216,111 + -0.7
216,111 + +0.2
216,111 + -0.1
216,111 + +0.2
216,112 - +0.6
216,168 + -0.4
216,168 + +1.0
216,168 + +0.7
216,169 - +0.0
216,169 - -1.5
216,173 + +0.8
216,174 - +1.8
216,176 + +0.4
216,176 + +0.1
216,176 + +0.1
216,176 + -0.4
216,177 - +0.2
216,177 - +1.5
216,192 + -0.6
216,193 - +1.7
216,208 - +0.7
216,232 + -1.0
216,233 - -0.5
216,234 + -0.1
216,245 - +0.7
216,280 - -0.7
216,364 + -0.2
216,366 + -0.5
216,366 + +0.0
216,366 + -0.7
216,366 + -0.3
216,367 - +0.5
216,386 + -2.6
216,387 - +0.5
216,391 + -0.1
216,391 + +0.4
216,391 + +1.6
216,391 + -0.5
216,391 + +0.1
216,391 + -0.2
216,392 - +0.5
216,392 - +1.0
216,392 - -0.4
216,392 - +0.0
216,455 + +0.3
216,455 + +0.1
216,455 + -0.1
216,455 + +0.4
216,455 + -0.9
216,455 + +0.9
216,455 + -1.1
216,455 + +0.4
216,456 - +0.3
216,456 - +1.6
216,456 - -1.2
216,456 - +0.5
216,476 + +0.2
216,488 + IAI46_00965 0.10 +0.8
216,488 + IAI46_00965 0.10 +0.7
216,488 + IAI46_00965 0.10 +0.5
216,489 - IAI46_00965 0.10 +0.5
216,489 - IAI46_00965 0.10 +0.5
216,530 + IAI46_00965 0.15 +1.0
216,530 + IAI46_00965 0.15 -0.1
216,530 + IAI46_00965 0.15 +0.0
216,530 + IAI46_00965 0.15 +0.3
216,530 + IAI46_00965 0.15 +0.3
216,530 + IAI46_00965 0.15 -0.0
216,530 + IAI46_00965 0.15 +0.6
216,531 - IAI46_00965 0.15 +0.0
216,531 - IAI46_00965 0.15 +1.0
216,531 - IAI46_00965 0.15 -0.8
216,531 - IAI46_00965 0.15 +0.2
216,531 - IAI46_00965 0.15 -0.2
216,531 - IAI46_00965 0.15 -0.4
216,531 - IAI46_00965 0.15 -0.1
216,531 - IAI46_00965 0.15 +1.7
216,531 - IAI46_00965 0.15 -0.3
216,531 - IAI46_00965 0.15 +1.8
216,531 - IAI46_00965 0.15 -0.0
216,532 + IAI46_00965 0.15 -0.4
216,532 + IAI46_00965 0.15 +0.8
216,532 + IAI46_00965 0.15 +0.3
216,532 + IAI46_00965 0.15 +0.1
216,532 + IAI46_00965 0.15 -0.1
216,532 + IAI46_00965 0.15 +0.6
216,532 + IAI46_00965 0.15 +0.1
216,532 + IAI46_00965 0.15 +0.5
216,533 - IAI46_00965 0.15 -0.2
216,533 - IAI46_00965 0.15 -0.6
216,533 - IAI46_00965 0.15 -0.4
216,533 - IAI46_00965 0.15 -0.1
216,533 - IAI46_00965 0.15 +1.3
216,533 - IAI46_00965 0.15 -0.1
216,545 + IAI46_00965 0.17 -1.1
216,545 + IAI46_00965 0.17 +0.4
216,545 + IAI46_00965 0.17 +0.1
216,545 + IAI46_00965 0.17 -0.2
216,545 + IAI46_00965 0.17 +0.5
216,545 + IAI46_00965 0.17 +0.3
216,545 + IAI46_00965 0.17 +0.6
216,546 - IAI46_00965 0.17 +0.0
216,546 - IAI46_00965 0.17 -0.1
216,546 - IAI46_00965 0.17 +0.1
216,546 - IAI46_00965 0.17 +0.2
216,546 - IAI46_00965 0.17 +0.2
216,546 - IAI46_00965 0.17 -0.1
216,546 - IAI46_00965 0.17 -0.5
216,557 - IAI46_00965 0.18 +0.6
216,650 + IAI46_00965 0.28 +0.1
216,726 + IAI46_00965 0.36 -1.0
216,752 + IAI46_00965 0.39 +0.1
216,847 + IAI46_00965 0.49 +0.2
216,848 - IAI46_00965 0.49 -0.1
216,868 + IAI46_00965 0.51 +0.2
216,868 + IAI46_00965 0.51 -2.1
216,869 - IAI46_00965 0.51 -0.3
216,928 + IAI46_00965 0.58 +0.2
216,929 - IAI46_00965 0.58 +0.3
217,054 - IAI46_00965 0.71 +0.5
217,070 + IAI46_00965 0.73 +0.4
217,070 + IAI46_00965 0.73 -0.2
217,071 - IAI46_00965 0.73 +0.3
217,071 - IAI46_00965 0.73 +0.8
217,071 - IAI46_00965 0.73 +0.2
217,089 - IAI46_00965 0.75 +0.2
217,089 - IAI46_00965 0.75 -0.1
217,090 + IAI46_00965 0.75 -0.6
217,179 + IAI46_00965 0.85 -0.0
217,180 - IAI46_00965 0.85 -3.0
217,228 + -0.4
217,228 + +0.1
217,228 + +0.6
217,228 + -0.1
217,229 - +0.7
217,229 - -0.0
217,315 - -0.4
217,545 - IAI46_00970 0.18 +0.1
217,547 + IAI46_00970 0.18 +0.2
217,646 + IAI46_00970 0.26 -0.3
217,647 - IAI46_00970 0.26 +1.4
217,672 + IAI46_00970 0.28 +0.2
217,673 - IAI46_00970 0.28 +0.1
217,673 - IAI46_00970 0.28 +0.4
217,762 + IAI46_00970 0.35 -1.0
217,763 - IAI46_00970 0.35 +0.7
217,763 - IAI46_00970 0.35 +0.4
217,768 + IAI46_00970 0.35 -0.2
217,768 + IAI46_00970 0.35 +0.1
217,768 + IAI46_00970 0.35 +0.1
217,768 + IAI46_00970 0.35 +0.2
217,769 - IAI46_00970 0.35 -0.1
217,786 + IAI46_00970 0.37 -0.4
217,786 + IAI46_00970 0.37 -0.3
217,787 - IAI46_00970 0.37 -0.3
217,789 + IAI46_00970 0.37 +0.3
217,790 - IAI46_00970 0.37 -0.2
217,888 + IAI46_00970 0.45 -0.3
217,889 - IAI46_00970 0.45 +0.8
218,055 + IAI46_00970 0.58 +0.9
218,056 - IAI46_00970 0.58 +0.6
218,056 - IAI46_00970 0.58 +0.1
218,075 - IAI46_00970 0.59 +0.3
218,075 - IAI46_00970 0.59 +0.6
218,259 + IAI46_00970 0.74 +0.4
218,259 + IAI46_00970 0.74 -0.7
218,259 + IAI46_00970 0.74 -0.6

Or see this region's nucleotide sequence