Strain Fitness in Serratia liquefaciens MT49 around IAI46_00750

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00745 and IAI46_00750 are separated by 111 nucleotidesIAI46_00750 and IAI46_00755 are separated by 7 nucleotidesIAI46_00755 and IAI46_00760 are separated by 64 nucleotides IAI46_00745: IAI46_00745 - magnesium/cobalt transporter CorA, at 170,459 to 171,409 _00745 IAI46_00750: IAI46_00750 - AbrB family transcriptional regulator, at 171,521 to 172,579 _00750 IAI46_00755: IAI46_00755 - EamA family transporter RarD, at 172,587 to 173,474 _00755 IAI46_00760: IAI46_00760 - thioesterase family protein, at 173,539 to 174,009 _00760 Position (kb) 171 172 173Strain fitness (log2 ratio) -2 -1 0 1 2 3at 170.633 kb on - strand, within IAI46_00745at 170.677 kb on + strand, within IAI46_00745at 170.677 kb on + strand, within IAI46_00745at 170.677 kb on + strand, within IAI46_00745at 170.677 kb on + strand, within IAI46_00745at 170.677 kb on + strand, within IAI46_00745at 170.694 kb on - strand, within IAI46_00745at 170.722 kb on + strand, within IAI46_00745at 170.733 kb on + strand, within IAI46_00745at 170.762 kb on + strand, within IAI46_00745at 170.762 kb on + strand, within IAI46_00745at 170.763 kb on - strand, within IAI46_00745at 170.763 kb on - strand, within IAI46_00745at 170.764 kb on + strand, within IAI46_00745at 170.764 kb on + strand, within IAI46_00745at 170.764 kb on + strand, within IAI46_00745at 170.765 kb on - strand, within IAI46_00745at 170.765 kb on - strand, within IAI46_00745at 170.801 kb on + strand, within IAI46_00745at 170.847 kb on - strand, within IAI46_00745at 170.847 kb on - strand, within IAI46_00745at 170.969 kb on + strand, within IAI46_00745at 170.969 kb on + strand, within IAI46_00745at 171.008 kb on - strand, within IAI46_00745at 171.071 kb on - strand, within IAI46_00745at 171.199 kb on + strand, within IAI46_00745at 171.377 kb on + strandat 171.378 kb on - strandat 171.383 kb on + strandat 171.408 kb on - strandat 171.408 kb on - strandat 171.471 kb on + strandat 171.471 kb on + strandat 171.472 kb on - strandat 171.477 kb on + strandat 171.478 kb on - strandat 171.478 kb on - strandat 171.495 kb on + strandat 171.495 kb on + strandat 171.605 kb on - strandat 171.605 kb on - strandat 171.686 kb on + strand, within IAI46_00750at 171.686 kb on + strand, within IAI46_00750at 171.847 kb on + strand, within IAI46_00750at 171.847 kb on + strand, within IAI46_00750at 171.847 kb on + strand, within IAI46_00750at 171.847 kb on + strand, within IAI46_00750at 171.847 kb on + strand, within IAI46_00750at 171.848 kb on - strand, within IAI46_00750at 171.848 kb on - strand, within IAI46_00750at 171.956 kb on - strand, within IAI46_00750at 171.956 kb on - strand, within IAI46_00750at 171.963 kb on - strand, within IAI46_00750at 172.136 kb on - strand, within IAI46_00750at 172.196 kb on - strand, within IAI46_00750at 172.206 kb on + strand, within IAI46_00750at 172.238 kb on + strand, within IAI46_00750at 172.238 kb on + strand, within IAI46_00750at 172.238 kb on + strand, within IAI46_00750at 172.238 kb on + strand, within IAI46_00750at 172.238 kb on + strand, within IAI46_00750at 172.239 kb on - strand, within IAI46_00750at 172.239 kb on - strand, within IAI46_00750at 172.240 kb on + strand, within IAI46_00750at 172.241 kb on - strand, within IAI46_00750at 172.303 kb on + strand, within IAI46_00750at 172.304 kb on - strand, within IAI46_00750at 172.304 kb on - strand, within IAI46_00750at 172.304 kb on - strand, within IAI46_00750at 172.578 kb on - strandat 172.608 kb on - strandat 172.608 kb on - strandat 172.609 kb on + strandat 172.609 kb on + strandat 172.609 kb on + strandat 172.609 kb on + strandat 172.609 kb on + strandat 172.610 kb on - strandat 172.625 kb on + strandat 172.626 kb on - strandat 172.650 kb on - strandat 172.694 kb on - strand, within IAI46_00755at 172.694 kb on - strand, within IAI46_00755at 172.735 kb on + strand, within IAI46_00755at 172.736 kb on - strand, within IAI46_00755at 172.736 kb on - strand, within IAI46_00755at 172.897 kb on + strand, within IAI46_00755at 172.984 kb on + strand, within IAI46_00755at 172.998 kb on - strand, within IAI46_00755at 172.998 kb on - strand, within IAI46_00755at 173.074 kb on - strand, within IAI46_00755at 173.074 kb on - strand, within IAI46_00755at 173.077 kb on - strand, within IAI46_00755at 173.159 kb on - strand, within IAI46_00755at 173.180 kb on + strand, within IAI46_00755at 173.180 kb on + strand, within IAI46_00755at 173.180 kb on + strand, within IAI46_00755at 173.181 kb on - strand, within IAI46_00755at 173.204 kb on + strand, within IAI46_00755at 173.205 kb on - strand, within IAI46_00755at 173.327 kb on + strand, within IAI46_00755at 173.328 kb on - strand, within IAI46_00755at 173.377 kb on - strand, within IAI46_00755at 173.399 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.410 kb on - strandat 173.534 kb on + strandat 173.534 kb on + strandat 173.534 kb on + strandat 173.535 kb on - strandat 173.535 kb on - strandat 173.535 kb on - strandat 173.552 kb on + strandat 173.553 kb on - strandat 173.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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170,633 - IAI46_00745 0.18 +0.6
170,677 + IAI46_00745 0.23 +0.2
170,677 + IAI46_00745 0.23 +0.6
170,677 + IAI46_00745 0.23 +0.3
170,677 + IAI46_00745 0.23 -0.4
170,677 + IAI46_00745 0.23 +0.6
170,694 - IAI46_00745 0.25 +0.1
170,722 + IAI46_00745 0.28 -0.0
170,733 + IAI46_00745 0.29 -0.1
170,762 + IAI46_00745 0.32 +0.1
170,762 + IAI46_00745 0.32 -0.4
170,763 - IAI46_00745 0.32 -0.1
170,763 - IAI46_00745 0.32 +1.1
170,764 + IAI46_00745 0.32 +0.2
170,764 + IAI46_00745 0.32 +0.0
170,764 + IAI46_00745 0.32 +0.2
170,765 - IAI46_00745 0.32 -0.1
170,765 - IAI46_00745 0.32 +0.3
170,801 + IAI46_00745 0.36 +0.1
170,847 - IAI46_00745 0.41 -0.2
170,847 - IAI46_00745 0.41 -1.3
170,969 + IAI46_00745 0.54 +0.2
170,969 + IAI46_00745 0.54 +0.7
171,008 - IAI46_00745 0.58 -0.5
171,071 - IAI46_00745 0.64 +2.9
171,199 + IAI46_00745 0.78 -0.2
171,377 + +0.6
171,378 - -0.6
171,383 + +0.4
171,408 - +0.0
171,408 - +0.2
171,471 + +0.4
171,471 + +0.9
171,472 - +0.7
171,477 + -0.1
171,478 - +0.1
171,478 - +0.4
171,495 + +0.1
171,495 + -0.3
171,605 - +0.4
171,605 - +0.7
171,686 + IAI46_00750 0.16 -2.1
171,686 + IAI46_00750 0.16 +0.5
171,847 + IAI46_00750 0.31 -0.2
171,847 + IAI46_00750 0.31 +0.4
171,847 + IAI46_00750 0.31 +0.9
171,847 + IAI46_00750 0.31 +1.6
171,847 + IAI46_00750 0.31 -0.6
171,848 - IAI46_00750 0.31 +0.4
171,848 - IAI46_00750 0.31 -0.3
171,956 - IAI46_00750 0.41 -0.5
171,956 - IAI46_00750 0.41 +0.1
171,963 - IAI46_00750 0.42 +0.7
172,136 - IAI46_00750 0.58 +0.3
172,196 - IAI46_00750 0.64 -0.9
172,206 + IAI46_00750 0.65 -0.9
172,238 + IAI46_00750 0.68 -0.1
172,238 + IAI46_00750 0.68 +1.3
172,238 + IAI46_00750 0.68 -0.1
172,238 + IAI46_00750 0.68 +0.4
172,238 + IAI46_00750 0.68 +0.2
172,239 - IAI46_00750 0.68 -0.1
172,239 - IAI46_00750 0.68 -0.5
172,240 + IAI46_00750 0.68 +0.6
172,241 - IAI46_00750 0.68 +1.0
172,303 + IAI46_00750 0.74 +0.1
172,304 - IAI46_00750 0.74 -0.0
172,304 - IAI46_00750 0.74 -0.1
172,304 - IAI46_00750 0.74 +0.0
172,578 - +0.7
172,608 - +0.3
172,608 - +1.0
172,609 + -0.5
172,609 + +0.9
172,609 + +0.7
172,609 + -0.1
172,609 + +0.2
172,610 - +0.1
172,625 + +0.2
172,626 - +0.7
172,650 - -2.3
172,694 - IAI46_00755 0.12 -0.4
172,694 - IAI46_00755 0.12 -0.6
172,735 + IAI46_00755 0.17 +0.5
172,736 - IAI46_00755 0.17 +1.6
172,736 - IAI46_00755 0.17 +0.3
172,897 + IAI46_00755 0.35 -0.6
172,984 + IAI46_00755 0.45 +1.8
172,998 - IAI46_00755 0.46 -0.1
172,998 - IAI46_00755 0.46 -1.6
173,074 - IAI46_00755 0.55 -1.0
173,074 - IAI46_00755 0.55 -1.9
173,077 - IAI46_00755 0.55 +0.5
173,159 - IAI46_00755 0.64 +0.0
173,180 + IAI46_00755 0.67 +0.0
173,180 + IAI46_00755 0.67 -0.3
173,180 + IAI46_00755 0.67 +0.1
173,181 - IAI46_00755 0.67 -0.3
173,204 + IAI46_00755 0.69 +0.4
173,205 - IAI46_00755 0.70 +1.3
173,327 + IAI46_00755 0.83 +0.0
173,328 - IAI46_00755 0.83 +0.3
173,377 - IAI46_00755 0.89 +0.7
173,399 - +1.4
173,410 - -0.2
173,410 - +0.6
173,410 - -0.7
173,410 - -0.8
173,410 - -1.5
173,410 - -0.1
173,410 - -0.3
173,410 - +0.2
173,534 + +0.3
173,534 + +0.6
173,534 + +0.6
173,535 - +0.2
173,535 - +0.0
173,535 - +0.4
173,552 + -0.4
173,553 - -0.1
173,553 - -0.3

Or see this region's nucleotide sequence