Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI46_00410 and IAI46_00415 are separated by 3 nucleotides IAI46_00415 and IAI46_00420 are separated by 112 nucleotides IAI46_00420 and IAI46_00425 are separated by 157 nucleotides IAI46_00425 and IAI46_00430 are separated by 223 nucleotides
IAI46_00410: IAI46_00410 - carbohydrate porin, at 93,583 to 94,977
_00410
IAI46_00415: IAI46_00415 - bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, at 94,981 to 95,580
_00415
IAI46_00420: IAI46_00420 - MarR family transcriptional regulator, at 95,693 to 96,157
_00420
IAI46_00425: IAI46_00425 - organic hydroperoxide resistance protein, at 96,315 to 96,740
_00425
IAI46_00430: IAI46_00430 - kdo(2)-lipid A phosphoethanolamine 7''-transferase, at 96,964 to 98,658
_00430
Position (kb) 95
96
97 Strain fitness (log2 ratio) -2
-1
0
1
2 at 94.766 kb on - strand, within IAI46_00410 at 94.795 kb on + strand, within IAI46_00410 at 94.796 kb on - strand, within IAI46_00410 at 94.796 kb on - strand, within IAI46_00410 at 94.849 kb on + strand at 94.895 kb on + strand at 94.896 kb on - strand at 94.900 kb on + strand at 94.901 kb on - strand at 94.901 kb on - strand at 94.922 kb on + strand at 94.922 kb on + strand at 94.923 kb on - strand at 94.923 kb on - strand at 94.964 kb on + strand at 95.044 kb on - strand, within IAI46_00415 at 95.044 kb on - strand, within IAI46_00415 at 95.085 kb on + strand, within IAI46_00415 at 95.085 kb on + strand, within IAI46_00415 at 95.085 kb on + strand, within IAI46_00415 at 95.086 kb on - strand, within IAI46_00415 at 95.086 kb on - strand, within IAI46_00415 at 95.086 kb on - strand, within IAI46_00415 at 95.159 kb on + strand, within IAI46_00415 at 95.160 kb on - strand, within IAI46_00415 at 95.160 kb on - strand, within IAI46_00415 at 95.563 kb on + strand at 95.563 kb on + strand at 95.563 kb on + strand at 95.563 kb on + strand at 95.563 kb on + strand at 95.564 kb on - strand at 95.564 kb on - strand at 95.581 kb on - strand at 95.626 kb on + strand at 95.627 kb on - strand at 95.627 kb on - strand at 95.636 kb on - strand at 95.640 kb on + strand at 95.769 kb on - strand, within IAI46_00420 at 95.798 kb on + strand, within IAI46_00420 at 95.798 kb on + strand, within IAI46_00420 at 95.831 kb on + strand, within IAI46_00420 at 95.832 kb on - strand, within IAI46_00420 at 95.840 kb on + strand, within IAI46_00420 at 95.860 kb on - strand, within IAI46_00420 at 95.860 kb on - strand, within IAI46_00420 at 96.103 kb on + strand, within IAI46_00420 at 96.104 kb on - strand, within IAI46_00420 at 96.107 kb on - strand, within IAI46_00420 at 96.144 kb on + strand at 96.144 kb on + strand at 96.145 kb on - strand at 96.195 kb on + strand at 96.195 kb on + strand at 96.195 kb on + strand at 96.282 kb on + strand at 96.314 kb on + strand at 96.315 kb on - strand at 96.456 kb on - strand, within IAI46_00425 at 96.691 kb on - strand, within IAI46_00425 at 96.691 kb on - strand, within IAI46_00425 at 96.713 kb on + strand at 96.713 kb on + strand at 96.714 kb on - strand at 96.714 kb on - strand at 96.714 kb on - strand at 96.714 kb on - strand at 96.721 kb on + strand at 96.721 kb on + strand at 96.734 kb on + strand at 96.734 kb on + strand at 96.735 kb on - strand at 96.735 kb on - strand at 96.735 kb on - strand at 96.775 kb on + strand at 96.775 kb on + strand at 96.775 kb on + strand at 96.775 kb on + strand at 96.776 kb on - strand at 96.776 kb on - strand at 96.776 kb on - strand at 96.776 kb on - strand at 96.778 kb on + strand at 96.778 kb on + strand at 96.779 kb on - strand at 96.779 kb on - strand at 96.779 kb on - strand at 96.809 kb on + strand at 96.809 kb on + strand at 96.810 kb on - strand at 96.810 kb on - strand at 96.862 kb on + strand at 96.862 kb on + strand at 96.863 kb on - strand at 96.865 kb on + strand at 96.866 kb on - strand at 96.883 kb on + strand at 96.883 kb on + strand at 96.884 kb on - strand at 96.961 kb on + strand at 96.962 kb on - strand at 96.962 kb on - strand at 96.975 kb on + strand at 96.976 kb on - strand at 96.998 kb on + strand at 96.999 kb on - strand at 97.004 kb on + strand at 97.019 kb on - strand at 97.052 kb on - strand at 97.052 kb on - strand at 97.092 kb on + strand at 97.092 kb on + strand at 97.093 kb on - strand at 97.093 kb on - strand at 97.137 kb on + strand, within IAI46_00430 at 97.138 kb on - strand, within IAI46_00430
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic remove 94,766 - IAI46_00410 0.85 +0.2 94,795 + IAI46_00410 0.87 +0.3 94,796 - IAI46_00410 0.87 +0.0 94,796 - IAI46_00410 0.87 -0.9 94,849 + +0.5 94,895 + +0.3 94,896 - -0.3 94,900 + -0.2 94,901 - +0.9 94,901 - +1.3 94,922 + +0.5 94,922 + -0.3 94,923 - -2.0 94,923 - -0.5 94,964 + +0.1 95,044 - IAI46_00415 0.10 +0.1 95,044 - IAI46_00415 0.10 +0.5 95,085 + IAI46_00415 0.17 -0.1 95,085 + IAI46_00415 0.17 -0.8 95,085 + IAI46_00415 0.17 +0.1 95,086 - IAI46_00415 0.17 +0.3 95,086 - IAI46_00415 0.17 +0.4 95,086 - IAI46_00415 0.17 -0.4 95,159 + IAI46_00415 0.30 +0.3 95,160 - IAI46_00415 0.30 +1.0 95,160 - IAI46_00415 0.30 +0.3 95,563 + -0.4 95,563 + +0.1 95,563 + +0.2 95,563 + -0.3 95,563 + +0.3 95,564 - +0.5 95,564 - +0.2 95,581 - -0.6 95,626 + +0.3 95,627 - +0.2 95,627 - -0.4 95,636 - +0.8 95,640 + -1.4 95,769 - IAI46_00420 0.16 -0.2 95,798 + IAI46_00420 0.23 +0.8 95,798 + IAI46_00420 0.23 +0.4 95,831 + IAI46_00420 0.30 +0.7 95,832 - IAI46_00420 0.30 +0.9 95,840 + IAI46_00420 0.32 +0.0 95,860 - IAI46_00420 0.36 +0.5 95,860 - IAI46_00420 0.36 +1.5 96,103 + IAI46_00420 0.88 -0.3 96,104 - IAI46_00420 0.88 +0.5 96,107 - IAI46_00420 0.89 +0.2 96,144 + +0.8 96,144 + +0.2 96,145 - +0.6 96,195 + +0.3 96,195 + -0.4 96,195 + -0.1 96,282 + +0.1 96,314 + +0.1 96,315 - +0.4 96,456 - IAI46_00425 0.33 -0.0 96,691 - IAI46_00425 0.88 -0.1 96,691 - IAI46_00425 0.88 +0.8 96,713 + +0.3 96,713 + +0.5 96,714 - +0.4 96,714 - -0.5 96,714 - -0.3 96,714 - -0.1 96,721 + -0.3 96,721 + +0.4 96,734 + -0.0 96,734 + +0.1 96,735 - +0.9 96,735 - -0.8 96,735 - +0.3 96,775 + +0.7 96,775 + +1.8 96,775 + +0.2 96,775 + -0.5 96,776 - -0.2 96,776 - -0.0 96,776 - +1.1 96,776 - +0.6 96,778 + -0.0 96,778 + -0.8 96,779 - -1.0 96,779 - +0.3 96,779 - -0.9 96,809 + +0.7 96,809 + -0.0 96,810 - +0.4 96,810 - +0.8 96,862 + +0.1 96,862 + -0.8 96,863 - +0.1 96,865 + +0.0 96,866 - +0.2 96,883 + +0.5 96,883 + -0.3 96,884 - +0.1 96,961 + -0.4 96,962 - +0.2 96,962 - -0.5 96,975 + -0.1 96,976 - -0.6 96,998 + +0.3 96,999 - +0.3 97,004 + -0.1 97,019 - +0.5 97,052 - -0.6 97,052 - -0.0 97,092 + +0.1 97,092 + +0.4 97,093 - +0.8 97,093 - -0.5 97,137 + IAI46_00430 0.10 -0.3 97,138 - IAI46_00430 0.10 +0.9
Or see this region's nucleotide sequence