Strain Fitness in Serratia liquefaciens MT49 around IAI46_00365

Experiment: Manganese (II) chloride tetrahydrate 50 uM, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI46_00360 and IAI46_00365 are separated by 68 nucleotidesIAI46_00365 and IAI46_00370 are separated by 24 nucleotides IAI46_00360: IAI46_00360 - LacI family DNA-binding transcriptional regulator, at 80,766 to 81,803 _00360 IAI46_00365: IAI46_00365 - SDR family oxidoreductase, at 81,872 to 82,633 _00365 IAI46_00370: IAI46_00370 - TRAP transporter large permease subunit, at 82,658 to 84,529 _00370 Position (kb) 81 82 83Strain fitness (log2 ratio) -2 -1 0 1at 81.039 kb on + strand, within IAI46_00360at 81.039 kb on + strand, within IAI46_00360at 81.040 kb on - strand, within IAI46_00360at 81.371 kb on + strand, within IAI46_00360at 81.371 kb on + strand, within IAI46_00360at 81.372 kb on - strand, within IAI46_00360at 81.372 kb on - strand, within IAI46_00360at 81.372 kb on - strand, within IAI46_00360at 81.421 kb on + strand, within IAI46_00360at 81.438 kb on + strand, within IAI46_00360at 81.438 kb on + strand, within IAI46_00360at 81.439 kb on - strand, within IAI46_00360at 81.439 kb on - strand, within IAI46_00360at 81.439 kb on - strand, within IAI46_00360at 81.439 kb on - strand, within IAI46_00360at 81.441 kb on + strand, within IAI46_00360at 81.441 kb on + strand, within IAI46_00360at 81.442 kb on - strand, within IAI46_00360at 81.442 kb on - strand, within IAI46_00360at 81.442 kb on - strand, within IAI46_00360at 81.457 kb on - strand, within IAI46_00360at 81.535 kb on + strand, within IAI46_00360at 81.536 kb on - strand, within IAI46_00360at 81.638 kb on + strand, within IAI46_00360at 81.638 kb on + strand, within IAI46_00360at 81.639 kb on - strand, within IAI46_00360at 81.667 kb on + strand, within IAI46_00360at 81.667 kb on + strand, within IAI46_00360at 81.668 kb on - strand, within IAI46_00360at 81.668 kb on - strand, within IAI46_00360at 81.792 kb on + strandat 81.793 kb on - strandat 81.794 kb on + strandat 81.794 kb on + strandat 81.794 kb on + strandat 81.794 kb on + strandat 81.794 kb on + strandat 81.795 kb on - strandat 81.795 kb on - strandat 81.795 kb on - strandat 81.842 kb on - strandat 81.842 kb on - strandat 81.874 kb on - strandat 81.904 kb on + strandat 81.919 kb on + strandat 81.919 kb on + strandat 81.920 kb on - strandat 81.921 kb on + strandat 81.921 kb on + strandat 81.922 kb on - strandat 81.922 kb on - strandat 81.928 kb on + strandat 81.934 kb on + strandat 81.935 kb on - strandat 81.935 kb on - strandat 81.954 kb on + strand, within IAI46_00365at 81.954 kb on + strand, within IAI46_00365at 81.954 kb on + strand, within IAI46_00365at 81.954 kb on + strand, within IAI46_00365at 81.954 kb on + strand, within IAI46_00365at 81.955 kb on - strand, within IAI46_00365at 82.015 kb on + strand, within IAI46_00365at 82.079 kb on - strand, within IAI46_00365at 82.158 kb on + strand, within IAI46_00365at 82.158 kb on + strand, within IAI46_00365at 82.159 kb on - strand, within IAI46_00365at 82.159 kb on - strand, within IAI46_00365at 82.388 kb on - strand, within IAI46_00365at 82.525 kb on + strand, within IAI46_00365at 82.743 kb on + strandat 82.743 kb on + strandat 82.743 kb on + strandat 82.743 kb on + strandat 82.744 kb on - strandat 82.744 kb on - strandat 82.744 kb on - strandat 82.753 kb on + strandat 82.759 kb on + strandat 82.760 kb on - strandat 82.803 kb on + strandat 82.803 kb on + strandat 82.803 kb on + strandat 82.804 kb on - strandat 82.804 kb on - strandat 82.804 kb on - strandat 82.804 kb on - strandat 82.870 kb on - strand, within IAI46_00370at 82.889 kb on + strand, within IAI46_00370at 82.890 kb on - strand, within IAI46_00370at 82.890 kb on - strand, within IAI46_00370at 82.927 kb on + strand, within IAI46_00370at 82.927 kb on + strand, within IAI46_00370at 82.966 kb on + strand, within IAI46_00370at 83.010 kb on + strand, within IAI46_00370at 83.105 kb on - strand, within IAI46_00370at 83.205 kb on + strand, within IAI46_00370at 83.205 kb on + strand, within IAI46_00370at 83.210 kb on + strand, within IAI46_00370at 83.211 kb on - strand, within IAI46_00370at 83.211 kb on - strand, within IAI46_00370at 83.393 kb on + strand, within IAI46_00370at 83.393 kb on + strand, within IAI46_00370at 83.468 kb on + strand, within IAI46_00370at 83.468 kb on + strand, within IAI46_00370at 83.468 kb on + strand, within IAI46_00370at 83.469 kb on - strand, within IAI46_00370at 83.469 kb on - strand, within IAI46_00370at 83.469 kb on - strand, within IAI46_00370at 83.480 kb on + strand, within IAI46_00370at 83.480 kb on + strand, within IAI46_00370at 83.507 kb on - strand, within IAI46_00370at 83.507 kb on - strand, within IAI46_00370at 83.526 kb on - strand, within IAI46_00370at 83.579 kb on + strand, within IAI46_00370

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Per-strain Table

Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 50 uM, aerobic
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81,039 + IAI46_00360 0.26 -0.3
81,039 + IAI46_00360 0.26 -0.9
81,040 - IAI46_00360 0.26 -1.6
81,371 + IAI46_00360 0.58 +0.6
81,371 + IAI46_00360 0.58 +0.4
81,372 - IAI46_00360 0.58 -0.2
81,372 - IAI46_00360 0.58 +0.3
81,372 - IAI46_00360 0.58 +0.0
81,421 + IAI46_00360 0.63 +0.9
81,438 + IAI46_00360 0.65 +0.6
81,438 + IAI46_00360 0.65 +1.0
81,439 - IAI46_00360 0.65 -0.6
81,439 - IAI46_00360 0.65 -0.0
81,439 - IAI46_00360 0.65 +0.2
81,439 - IAI46_00360 0.65 +0.5
81,441 + IAI46_00360 0.65 -1.0
81,441 + IAI46_00360 0.65 +0.2
81,442 - IAI46_00360 0.65 +0.3
81,442 - IAI46_00360 0.65 -0.2
81,442 - IAI46_00360 0.65 -0.6
81,457 - IAI46_00360 0.67 +0.6
81,535 + IAI46_00360 0.74 -0.2
81,536 - IAI46_00360 0.74 +0.9
81,638 + IAI46_00360 0.84 -0.1
81,638 + IAI46_00360 0.84 +0.2
81,639 - IAI46_00360 0.84 +0.3
81,667 + IAI46_00360 0.87 +0.1
81,667 + IAI46_00360 0.87 +0.6
81,668 - IAI46_00360 0.87 -0.9
81,668 - IAI46_00360 0.87 -0.3
81,792 + +0.6
81,793 - +0.6
81,794 + +1.3
81,794 + -0.7
81,794 + +0.3
81,794 + +0.7
81,794 + -1.4
81,795 - +1.1
81,795 - +0.1
81,795 - +0.0
81,842 - -0.3
81,842 - -1.1
81,874 - +1.0
81,904 + +0.1
81,919 + +0.4
81,919 + +1.1
81,920 - -0.3
81,921 + -1.6
81,921 + +0.3
81,922 - +1.6
81,922 - +0.6
81,928 + +0.2
81,934 + +1.2
81,935 - +0.1
81,935 - -0.3
81,954 + IAI46_00365 0.11 +0.8
81,954 + IAI46_00365 0.11 +0.1
81,954 + IAI46_00365 0.11 +0.0
81,954 + IAI46_00365 0.11 +0.1
81,954 + IAI46_00365 0.11 +0.9
81,955 - IAI46_00365 0.11 +0.4
82,015 + IAI46_00365 0.19 -2.4
82,079 - IAI46_00365 0.27 +0.3
82,158 + IAI46_00365 0.38 -0.3
82,158 + IAI46_00365 0.38 -0.1
82,159 - IAI46_00365 0.38 +0.3
82,159 - IAI46_00365 0.38 +0.5
82,388 - IAI46_00365 0.68 -0.4
82,525 + IAI46_00365 0.86 -0.2
82,743 + +0.3
82,743 + +0.5
82,743 + +0.5
82,743 + +0.2
82,744 - +0.9
82,744 - +0.4
82,744 - +0.3
82,753 + -0.8
82,759 + -0.2
82,760 - -0.0
82,803 + +0.7
82,803 + -0.7
82,803 + +0.6
82,804 - -0.7
82,804 - -0.5
82,804 - +0.7
82,804 - -0.1
82,870 - IAI46_00370 0.11 -0.1
82,889 + IAI46_00370 0.12 +1.3
82,890 - IAI46_00370 0.12 +0.4
82,890 - IAI46_00370 0.12 +0.3
82,927 + IAI46_00370 0.14 +0.2
82,927 + IAI46_00370 0.14 +0.4
82,966 + IAI46_00370 0.16 -0.5
83,010 + IAI46_00370 0.19 -0.8
83,105 - IAI46_00370 0.24 -0.0
83,205 + IAI46_00370 0.29 -0.7
83,205 + IAI46_00370 0.29 +0.2
83,210 + IAI46_00370 0.29 -0.2
83,211 - IAI46_00370 0.30 +0.8
83,211 - IAI46_00370 0.30 +0.0
83,393 + IAI46_00370 0.39 -0.1
83,393 + IAI46_00370 0.39 -1.6
83,468 + IAI46_00370 0.43 -0.2
83,468 + IAI46_00370 0.43 -0.2
83,468 + IAI46_00370 0.43 +1.1
83,469 - IAI46_00370 0.43 +0.2
83,469 - IAI46_00370 0.43 -0.3
83,469 - IAI46_00370 0.43 +0.2
83,480 + IAI46_00370 0.44 +0.1
83,480 + IAI46_00370 0.44 +0.3
83,507 - IAI46_00370 0.45 +0.2
83,507 - IAI46_00370 0.45 -0.2
83,526 - IAI46_00370 0.46 -0.1
83,579 + IAI46_00370 0.49 -0.6

Or see this region's nucleotide sequence