Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17545

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17540 and CA264_17545 are separated by 248 nucleotidesCA264_17545 and CA264_17550 are separated by 129 nucleotides CA264_17540: CA264_17540 - hypothetical protein, at 4,086,431 to 4,088,248 _17540 CA264_17545: CA264_17545 - single-stranded-DNA-specific exonuclease RecJ, at 4,088,497 to 4,090,203 _17545 CA264_17550: CA264_17550 - lysozyme, at 4,090,333 to 4,091,157 _17550 Position (kb) 4088 4089 4090 4091Strain fitness (log2 ratio) -2 -1 0 1 2at 4087.502 kb on + strand, within CA264_17540at 4087.611 kb on - strand, within CA264_17540at 4087.728 kb on - strand, within CA264_17540at 4087.728 kb on - strand, within CA264_17540at 4087.730 kb on - strand, within CA264_17540at 4087.730 kb on - strand, within CA264_17540at 4087.907 kb on - strand, within CA264_17540at 4087.982 kb on + strand, within CA264_17540at 4088.111 kb on - strandat 4088.156 kb on + strandat 4088.276 kb on + strandat 4088.277 kb on - strandat 4088.277 kb on - strandat 4088.277 kb on - strandat 4088.278 kb on + strandat 4088.279 kb on - strandat 4088.308 kb on + strandat 4088.308 kb on + strandat 4088.308 kb on + strandat 4088.309 kb on - strandat 4088.309 kb on - strandat 4088.333 kb on - strandat 4088.379 kb on - strandat 4088.380 kb on + strandat 4088.451 kb on + strandat 4088.480 kb on + strandat 4088.480 kb on + strandat 4088.480 kb on + strandat 4088.480 kb on + strandat 4088.480 kb on + strandat 4088.482 kb on + strandat 4088.482 kb on + strandat 4088.482 kb on + strandat 4088.483 kb on - strandat 4088.483 kb on - strandat 4088.490 kb on + strandat 4088.514 kb on - strandat 4088.578 kb on - strandat 4088.578 kb on - strandat 4088.792 kb on - strand, within CA264_17545at 4088.809 kb on + strand, within CA264_17545at 4088.809 kb on + strand, within CA264_17545at 4088.810 kb on - strand, within CA264_17545at 4088.810 kb on - strand, within CA264_17545at 4088.811 kb on + strand, within CA264_17545at 4088.812 kb on - strand, within CA264_17545at 4088.830 kb on + strand, within CA264_17545at 4088.879 kb on + strand, within CA264_17545at 4088.880 kb on - strand, within CA264_17545at 4088.880 kb on - strand, within CA264_17545at 4088.913 kb on + strand, within CA264_17545at 4088.915 kb on + strand, within CA264_17545at 4088.957 kb on - strand, within CA264_17545at 4089.071 kb on - strand, within CA264_17545at 4089.123 kb on + strand, within CA264_17545at 4089.124 kb on - strand, within CA264_17545at 4089.125 kb on + strand, within CA264_17545at 4089.125 kb on + strand, within CA264_17545at 4089.126 kb on - strand, within CA264_17545at 4089.132 kb on + strand, within CA264_17545at 4089.155 kb on - strand, within CA264_17545at 4089.155 kb on - strand, within CA264_17545at 4089.155 kb on - strand, within CA264_17545at 4089.195 kb on + strand, within CA264_17545at 4089.281 kb on + strand, within CA264_17545at 4089.282 kb on - strand, within CA264_17545at 4089.282 kb on - strand, within CA264_17545at 4089.357 kb on + strand, within CA264_17545at 4089.358 kb on - strand, within CA264_17545at 4089.435 kb on + strand, within CA264_17545at 4089.462 kb on + strand, within CA264_17545at 4089.753 kb on + strand, within CA264_17545at 4089.754 kb on - strand, within CA264_17545at 4089.754 kb on - strand, within CA264_17545at 4089.754 kb on - strand, within CA264_17545at 4089.754 kb on - strand, within CA264_17545at 4089.754 kb on - strand, within CA264_17545at 4089.754 kb on - strand, within CA264_17545at 4089.754 kb on - strand, within CA264_17545at 4089.757 kb on + strand, within CA264_17545at 4089.757 kb on + strand, within CA264_17545at 4089.758 kb on - strand, within CA264_17545at 4089.758 kb on - strand, within CA264_17545at 4089.758 kb on - strand, within CA264_17545at 4089.758 kb on - strand, within CA264_17545at 4089.771 kb on + strand, within CA264_17545at 4089.782 kb on + strand, within CA264_17545at 4089.803 kb on + strand, within CA264_17545at 4089.804 kb on - strand, within CA264_17545at 4089.832 kb on - strand, within CA264_17545at 4089.887 kb on + strand, within CA264_17545at 4089.897 kb on + strand, within CA264_17545at 4089.983 kb on - strand, within CA264_17545at 4089.998 kb on + strand, within CA264_17545at 4089.998 kb on + strand, within CA264_17545at 4089.998 kb on + strand, within CA264_17545at 4090.091 kb on - strandat 4090.101 kb on - strandat 4090.131 kb on + strandat 4090.132 kb on - strandat 4090.151 kb on - strandat 4090.161 kb on - strandat 4090.218 kb on - strandat 4090.247 kb on - strandat 4090.262 kb on + strandat 4090.284 kb on + strandat 4090.285 kb on - strandat 4090.312 kb on - strandat 4090.357 kb on + strandat 4090.358 kb on - strandat 4090.419 kb on + strand, within CA264_17550at 4090.420 kb on - strand, within CA264_17550at 4090.420 kb on - strand, within CA264_17550at 4090.449 kb on + strand, within CA264_17550at 4090.450 kb on - strand, within CA264_17550at 4090.450 kb on - strand, within CA264_17550at 4090.496 kb on + strand, within CA264_17550at 4090.529 kb on - strand, within CA264_17550at 4090.572 kb on - strand, within CA264_17550at 4090.622 kb on + strand, within CA264_17550at 4090.702 kb on + strand, within CA264_17550at 4090.814 kb on + strand, within CA264_17550at 4090.814 kb on + strand, within CA264_17550at 4090.815 kb on - strand, within CA264_17550at 4091.053 kb on - strand, within CA264_17550at 4091.053 kb on - strand, within CA264_17550at 4091.053 kb on - strand, within CA264_17550at 4091.158 kb on - strandat 4091.158 kb on - strandat 4091.171 kb on - strandat 4091.171 kb on - strandat 4091.175 kb on + strandat 4091.193 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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4,087,502 + CA264_17540 0.59 +1.5
4,087,611 - CA264_17540 0.65 -0.1
4,087,728 - CA264_17540 0.71 -0.2
4,087,728 - CA264_17540 0.71 +0.0
4,087,730 - CA264_17540 0.71 -0.5
4,087,730 - CA264_17540 0.71 -0.0
4,087,907 - CA264_17540 0.81 -0.2
4,087,982 + CA264_17540 0.85 -0.2
4,088,111 - +0.5
4,088,156 + -1.8
4,088,276 + +0.1
4,088,277 - +0.1
4,088,277 - -0.3
4,088,277 - +0.8
4,088,278 + +0.2
4,088,279 - -0.1
4,088,308 + -0.8
4,088,308 + +0.3
4,088,308 + -0.5
4,088,309 - -0.9
4,088,309 - -0.7
4,088,333 - -0.5
4,088,379 - -0.3
4,088,380 + -0.3
4,088,451 + -0.0
4,088,480 + -1.4
4,088,480 + -0.3
4,088,480 + -0.1
4,088,480 + +1.0
4,088,480 + -1.5
4,088,482 + -0.1
4,088,482 + -0.1
4,088,482 + -0.2
4,088,483 - -0.6
4,088,483 - +1.3
4,088,490 + +0.3
4,088,514 - -0.2
4,088,578 - -0.3
4,088,578 - -0.3
4,088,792 - CA264_17545 0.17 -1.0
4,088,809 + CA264_17545 0.18 -0.0
4,088,809 + CA264_17545 0.18 -0.3
4,088,810 - CA264_17545 0.18 -0.8
4,088,810 - CA264_17545 0.18 -0.3
4,088,811 + CA264_17545 0.18 +0.6
4,088,812 - CA264_17545 0.18 +0.5
4,088,830 + CA264_17545 0.20 +0.4
4,088,879 + CA264_17545 0.22 -0.3
4,088,880 - CA264_17545 0.22 +0.5
4,088,880 - CA264_17545 0.22 -0.3
4,088,913 + CA264_17545 0.24 +0.0
4,088,915 + CA264_17545 0.24 -0.1
4,088,957 - CA264_17545 0.27 +0.9
4,089,071 - CA264_17545 0.34 -0.6
4,089,123 + CA264_17545 0.37 -0.2
4,089,124 - CA264_17545 0.37 +1.2
4,089,125 + CA264_17545 0.37 -0.2
4,089,125 + CA264_17545 0.37 +0.9
4,089,126 - CA264_17545 0.37 -0.2
4,089,132 + CA264_17545 0.37 -0.4
4,089,155 - CA264_17545 0.39 +0.0
4,089,155 - CA264_17545 0.39 +0.4
4,089,155 - CA264_17545 0.39 -0.5
4,089,195 + CA264_17545 0.41 +0.5
4,089,281 + CA264_17545 0.46 +0.0
4,089,282 - CA264_17545 0.46 +0.2
4,089,282 - CA264_17545 0.46 +0.1
4,089,357 + CA264_17545 0.50 +1.8
4,089,358 - CA264_17545 0.50 -0.2
4,089,435 + CA264_17545 0.55 -0.5
4,089,462 + CA264_17545 0.57 -0.3
4,089,753 + CA264_17545 0.74 +1.2
4,089,754 - CA264_17545 0.74 +0.1
4,089,754 - CA264_17545 0.74 +1.1
4,089,754 - CA264_17545 0.74 +0.2
4,089,754 - CA264_17545 0.74 -0.1
4,089,754 - CA264_17545 0.74 +0.1
4,089,754 - CA264_17545 0.74 +0.9
4,089,754 - CA264_17545 0.74 -0.0
4,089,757 + CA264_17545 0.74 +0.0
4,089,757 + CA264_17545 0.74 -0.2
4,089,758 - CA264_17545 0.74 -0.0
4,089,758 - CA264_17545 0.74 +1.6
4,089,758 - CA264_17545 0.74 -0.1
4,089,758 - CA264_17545 0.74 -0.2
4,089,771 + CA264_17545 0.75 -0.3
4,089,782 + CA264_17545 0.75 -0.5
4,089,803 + CA264_17545 0.77 -0.1
4,089,804 - CA264_17545 0.77 -0.8
4,089,832 - CA264_17545 0.78 +0.9
4,089,887 + CA264_17545 0.81 +0.6
4,089,897 + CA264_17545 0.82 +0.3
4,089,983 - CA264_17545 0.87 +0.4
4,089,998 + CA264_17545 0.88 +0.0
4,089,998 + CA264_17545 0.88 -0.7
4,089,998 + CA264_17545 0.88 -0.5
4,090,091 - -0.2
4,090,101 - -0.5
4,090,131 + -0.4
4,090,132 - -2.2
4,090,151 - -0.4
4,090,161 - -1.7
4,090,218 - +0.1
4,090,247 - -0.4
4,090,262 + -0.0
4,090,284 + +2.4
4,090,285 - +0.2
4,090,312 - -1.0
4,090,357 + -0.0
4,090,358 - -0.5
4,090,419 + CA264_17550 0.10 +0.2
4,090,420 - CA264_17550 0.11 +1.2
4,090,420 - CA264_17550 0.11 +0.0
4,090,449 + CA264_17550 0.14 +0.3
4,090,450 - CA264_17550 0.14 +0.5
4,090,450 - CA264_17550 0.14 -0.1
4,090,496 + CA264_17550 0.20 +1.8
4,090,529 - CA264_17550 0.24 -0.9
4,090,572 - CA264_17550 0.29 -0.5
4,090,622 + CA264_17550 0.35 -0.4
4,090,702 + CA264_17550 0.45 -0.4
4,090,814 + CA264_17550 0.58 -0.6
4,090,814 + CA264_17550 0.58 -0.2
4,090,815 - CA264_17550 0.58 +1.2
4,091,053 - CA264_17550 0.87 +0.3
4,091,053 - CA264_17550 0.87 -0.4
4,091,053 - CA264_17550 0.87 +0.1
4,091,158 - -1.3
4,091,158 - -1.0
4,091,171 - -0.7
4,091,171 - -0.7
4,091,175 + -1.4
4,091,193 - +1.1

Or see this region's nucleotide sequence