Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16825

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16820 and CA264_16825 are separated by 322 nucleotidesCA264_16825 and CA264_16830 are separated by 275 nucleotides CA264_16820: CA264_16820 - hypothetical protein, at 3,925,902 to 3,926,468 _16820 CA264_16825: CA264_16825 - hypothetical protein, at 3,926,791 to 3,927,420 _16825 CA264_16830: CA264_16830 - (2Fe-2S)-binding protein, at 3,927,696 to 3,929,228 _16830 Position (kb) 3926 3927 3928Strain fitness (log2 ratio) -2 -1 0 1 2at 3925.903 kb on + strandat 3925.917 kb on - strandat 3925.924 kb on - strandat 3925.924 kb on - strandat 3925.928 kb on + strandat 3926.054 kb on - strand, within CA264_16820at 3926.135 kb on + strand, within CA264_16820at 3926.147 kb on + strand, within CA264_16820at 3926.148 kb on - strand, within CA264_16820at 3926.149 kb on + strand, within CA264_16820at 3926.149 kb on + strand, within CA264_16820at 3926.203 kb on + strand, within CA264_16820at 3926.252 kb on - strand, within CA264_16820at 3926.279 kb on + strand, within CA264_16820at 3926.287 kb on + strand, within CA264_16820at 3926.288 kb on - strand, within CA264_16820at 3926.288 kb on - strand, within CA264_16820at 3926.288 kb on - strand, within CA264_16820at 3926.372 kb on + strand, within CA264_16820at 3926.373 kb on - strand, within CA264_16820at 3926.417 kb on + strandat 3926.507 kb on - strandat 3926.507 kb on - strandat 3926.521 kb on - strandat 3926.521 kb on - strandat 3926.566 kb on - strandat 3926.583 kb on + strandat 3926.653 kb on + strandat 3926.660 kb on + strandat 3926.785 kb on - strandat 3926.789 kb on - strandat 3926.793 kb on - strandat 3926.793 kb on - strandat 3926.834 kb on - strandat 3926.894 kb on - strand, within CA264_16825at 3926.914 kb on + strand, within CA264_16825at 3926.915 kb on - strand, within CA264_16825at 3926.982 kb on - strand, within CA264_16825at 3927.059 kb on - strand, within CA264_16825at 3927.141 kb on - strand, within CA264_16825at 3927.222 kb on + strand, within CA264_16825at 3927.222 kb on + strand, within CA264_16825at 3927.247 kb on + strand, within CA264_16825at 3927.256 kb on + strand, within CA264_16825at 3927.277 kb on + strand, within CA264_16825at 3927.283 kb on - strand, within CA264_16825at 3927.299 kb on + strand, within CA264_16825at 3927.401 kb on - strandat 3927.404 kb on - strandat 3927.479 kb on - strandat 3927.551 kb on - strandat 3927.621 kb on + strandat 3927.621 kb on + strandat 3927.668 kb on - strandat 3927.668 kb on - strandat 3927.725 kb on - strandat 3927.828 kb on + strandat 3927.875 kb on - strand, within CA264_16830at 3927.918 kb on + strand, within CA264_16830at 3927.918 kb on + strand, within CA264_16830at 3927.919 kb on - strand, within CA264_16830at 3927.919 kb on - strand, within CA264_16830at 3928.009 kb on + strand, within CA264_16830at 3928.040 kb on + strand, within CA264_16830at 3928.045 kb on + strand, within CA264_16830at 3928.045 kb on + strand, within CA264_16830at 3928.046 kb on - strand, within CA264_16830at 3928.046 kb on - strand, within CA264_16830at 3928.325 kb on - strand, within CA264_16830at 3928.371 kb on - strand, within CA264_16830

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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3,925,903 + -0.6
3,925,917 - +0.1
3,925,924 - +1.1
3,925,924 - -0.5
3,925,928 + +0.1
3,926,054 - CA264_16820 0.27 -0.7
3,926,135 + CA264_16820 0.41 -0.1
3,926,147 + CA264_16820 0.43 +1.5
3,926,148 - CA264_16820 0.43 -0.8
3,926,149 + CA264_16820 0.44 -1.3
3,926,149 + CA264_16820 0.44 +0.4
3,926,203 + CA264_16820 0.53 -0.8
3,926,252 - CA264_16820 0.62 +0.1
3,926,279 + CA264_16820 0.66 +0.0
3,926,287 + CA264_16820 0.68 -2.0
3,926,288 - CA264_16820 0.68 -0.2
3,926,288 - CA264_16820 0.68 -0.1
3,926,288 - CA264_16820 0.68 +0.6
3,926,372 + CA264_16820 0.83 +0.1
3,926,373 - CA264_16820 0.83 +0.0
3,926,417 + +0.2
3,926,507 - -0.3
3,926,507 - -2.4
3,926,521 - -1.6
3,926,521 - +0.1
3,926,566 - -0.1
3,926,583 + -0.2
3,926,653 + -0.4
3,926,660 + -0.5
3,926,785 - -0.3
3,926,789 - -0.5
3,926,793 - +0.4
3,926,793 - +0.0
3,926,834 - -0.3
3,926,894 - CA264_16825 0.16 +0.1
3,926,914 + CA264_16825 0.20 -0.3
3,926,915 - CA264_16825 0.20 -0.3
3,926,982 - CA264_16825 0.30 +0.9
3,927,059 - CA264_16825 0.43 +0.8
3,927,141 - CA264_16825 0.56 -0.1
3,927,222 + CA264_16825 0.68 -0.3
3,927,222 + CA264_16825 0.68 -0.3
3,927,247 + CA264_16825 0.72 +0.0
3,927,256 + CA264_16825 0.74 +0.1
3,927,277 + CA264_16825 0.77 +0.4
3,927,283 - CA264_16825 0.78 +0.1
3,927,299 + CA264_16825 0.81 +1.0
3,927,401 - -0.5
3,927,404 - +1.0
3,927,479 - +0.0
3,927,551 - +0.0
3,927,621 + -0.3
3,927,621 + -0.2
3,927,668 - -1.0
3,927,668 - -0.2
3,927,725 - +1.0
3,927,828 + -1.1
3,927,875 - CA264_16830 0.12 -1.0
3,927,918 + CA264_16830 0.14 +2.1
3,927,918 + CA264_16830 0.14 -0.4
3,927,919 - CA264_16830 0.15 -0.5
3,927,919 - CA264_16830 0.15 -0.8
3,928,009 + CA264_16830 0.20 -1.5
3,928,040 + CA264_16830 0.22 +0.0
3,928,045 + CA264_16830 0.23 -0.4
3,928,045 + CA264_16830 0.23 -0.4
3,928,046 - CA264_16830 0.23 -0.6
3,928,046 - CA264_16830 0.23 -0.1
3,928,325 - CA264_16830 0.41 -0.5
3,928,371 - CA264_16830 0.44 -1.0

Or see this region's nucleotide sequence