Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16280

Experiment: m.b. Chlorite 0.08 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_16275 and CA264_16280 are separated by 342 nucleotidesCA264_16280 and CA264_16285 overlap by 20 nucleotides CA264_16275: CA264_16275 - PA-phosphatase, at 3,787,072 to 3,787,965 _16275 CA264_16280: CA264_16280 - bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase, at 3,788,308 to 3,789,825 _16280 CA264_16285: CA264_16285 - hypothetical protein, at 3,789,806 to 3,790,705 _16285 Position (kb) 3788 3789 3790Strain fitness (log2 ratio) -2 -1 0 1at 3787.347 kb on + strand, within CA264_16275at 3787.348 kb on - strand, within CA264_16275at 3787.350 kb on + strand, within CA264_16275at 3787.351 kb on - strand, within CA264_16275at 3787.351 kb on - strand, within CA264_16275at 3787.351 kb on - strand, within CA264_16275at 3787.358 kb on + strand, within CA264_16275at 3787.358 kb on + strand, within CA264_16275at 3787.359 kb on - strand, within CA264_16275at 3787.416 kb on + strand, within CA264_16275at 3787.425 kb on + strand, within CA264_16275at 3787.425 kb on + strand, within CA264_16275at 3787.426 kb on - strand, within CA264_16275at 3787.435 kb on + strand, within CA264_16275at 3787.436 kb on - strand, within CA264_16275at 3787.436 kb on - strand, within CA264_16275at 3787.436 kb on - strand, within CA264_16275at 3787.559 kb on + strand, within CA264_16275at 3787.572 kb on + strand, within CA264_16275at 3787.652 kb on + strand, within CA264_16275at 3787.653 kb on - strand, within CA264_16275at 3787.817 kb on - strand, within CA264_16275at 3787.974 kb on + strandat 3787.975 kb on - strandat 3787.996 kb on - strandat 3788.054 kb on + strandat 3788.057 kb on - strandat 3788.057 kb on - strandat 3788.110 kb on + strandat 3788.110 kb on + strandat 3788.272 kb on + strandat 3788.272 kb on + strandat 3788.272 kb on + strandat 3788.272 kb on + strandat 3788.273 kb on - strandat 3788.273 kb on - strandat 3788.273 kb on - strandat 3788.277 kb on + strandat 3788.277 kb on + strandat 3788.278 kb on - strandat 3788.278 kb on - strandat 3788.278 kb on - strandat 3788.278 kb on - strandat 3788.281 kb on + strandat 3788.281 kb on + strandat 3788.281 kb on + strandat 3788.282 kb on - strandat 3788.379 kb on + strandat 3788.413 kb on - strandat 3788.413 kb on - strandat 3788.542 kb on + strand, within CA264_16280at 3788.543 kb on - strand, within CA264_16280at 3788.580 kb on + strand, within CA264_16280at 3788.723 kb on - strand, within CA264_16280at 3788.842 kb on + strand, within CA264_16280at 3788.842 kb on + strand, within CA264_16280at 3788.843 kb on - strand, within CA264_16280at 3788.899 kb on + strand, within CA264_16280at 3788.899 kb on + strand, within CA264_16280at 3788.899 kb on + strand, within CA264_16280at 3788.972 kb on - strand, within CA264_16280at 3788.975 kb on + strand, within CA264_16280at 3788.993 kb on + strand, within CA264_16280at 3789.160 kb on + strand, within CA264_16280at 3789.161 kb on - strand, within CA264_16280at 3789.253 kb on + strand, within CA264_16280at 3789.253 kb on + strand, within CA264_16280at 3789.254 kb on - strand, within CA264_16280at 3789.254 kb on - strand, within CA264_16280at 3789.254 kb on - strand, within CA264_16280at 3789.388 kb on - strand, within CA264_16280at 3789.392 kb on + strand, within CA264_16280at 3789.420 kb on + strand, within CA264_16280at 3789.467 kb on + strand, within CA264_16280at 3789.526 kb on + strand, within CA264_16280at 3789.526 kb on + strand, within CA264_16280at 3789.526 kb on + strand, within CA264_16280at 3789.526 kb on + strand, within CA264_16280at 3789.527 kb on - strand, within CA264_16280at 3789.580 kb on + strand, within CA264_16280at 3789.580 kb on + strand, within CA264_16280at 3789.581 kb on - strand, within CA264_16280at 3789.581 kb on - strand, within CA264_16280at 3789.703 kb on + strandat 3789.703 kb on + strandat 3789.703 kb on + strandat 3789.704 kb on - strandat 3789.704 kb on - strandat 3789.735 kb on - strandat 3789.735 kb on - strandat 3789.830 kb on + strandat 3789.879 kb on + strandat 3789.879 kb on + strandat 3789.879 kb on + strandat 3789.880 kb on - strandat 3789.882 kb on + strandat 3789.884 kb on + strandat 3789.997 kb on - strand, within CA264_16285at 3790.083 kb on + strand, within CA264_16285at 3790.083 kb on + strand, within CA264_16285at 3790.089 kb on + strand, within CA264_16285at 3790.090 kb on - strand, within CA264_16285at 3790.090 kb on - strand, within CA264_16285at 3790.227 kb on + strand, within CA264_16285at 3790.352 kb on + strand, within CA264_16285at 3790.375 kb on - strand, within CA264_16285at 3790.397 kb on - strand, within CA264_16285at 3790.400 kb on + strand, within CA264_16285at 3790.401 kb on - strand, within CA264_16285at 3790.463 kb on + strand, within CA264_16285at 3790.513 kb on - strand, within CA264_16285at 3790.581 kb on + strand, within CA264_16285at 3790.709 kb on - strandat 3790.808 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
remove
3,787,347 + CA264_16275 0.31 +0.4
3,787,348 - CA264_16275 0.31 +0.6
3,787,350 + CA264_16275 0.31 -1.9
3,787,351 - CA264_16275 0.31 +0.1
3,787,351 - CA264_16275 0.31 +0.0
3,787,351 - CA264_16275 0.31 -0.3
3,787,358 + CA264_16275 0.32 +1.7
3,787,358 + CA264_16275 0.32 -0.9
3,787,359 - CA264_16275 0.32 +0.0
3,787,416 + CA264_16275 0.38 +0.4
3,787,425 + CA264_16275 0.39 -0.7
3,787,425 + CA264_16275 0.39 +0.3
3,787,426 - CA264_16275 0.40 -0.7
3,787,435 + CA264_16275 0.41 +0.6
3,787,436 - CA264_16275 0.41 +0.3
3,787,436 - CA264_16275 0.41 -0.7
3,787,436 - CA264_16275 0.41 -0.9
3,787,559 + CA264_16275 0.54 -0.1
3,787,572 + CA264_16275 0.56 -0.7
3,787,652 + CA264_16275 0.65 +0.1
3,787,653 - CA264_16275 0.65 +0.8
3,787,817 - CA264_16275 0.83 -0.3
3,787,974 + +0.5
3,787,975 - +0.4
3,787,996 - +0.2
3,788,054 + -0.3
3,788,057 - -0.4
3,788,057 - +1.2
3,788,110 + +0.4
3,788,110 + +0.3
3,788,272 + +0.5
3,788,272 + -0.2
3,788,272 + -0.3
3,788,272 + +0.5
3,788,273 - -0.3
3,788,273 - -0.2
3,788,273 - -0.4
3,788,277 + -0.1
3,788,277 + +0.8
3,788,278 - -0.3
3,788,278 - -0.6
3,788,278 - -0.4
3,788,278 - -0.8
3,788,281 + +0.7
3,788,281 + +0.4
3,788,281 + -0.4
3,788,282 - +0.4
3,788,379 + -0.3
3,788,413 - -0.1
3,788,413 - +0.0
3,788,542 + CA264_16280 0.15 +0.1
3,788,543 - CA264_16280 0.15 -0.0
3,788,580 + CA264_16280 0.18 +0.4
3,788,723 - CA264_16280 0.27 +0.3
3,788,842 + CA264_16280 0.35 -0.2
3,788,842 + CA264_16280 0.35 -0.5
3,788,843 - CA264_16280 0.35 -0.3
3,788,899 + CA264_16280 0.39 -0.7
3,788,899 + CA264_16280 0.39 -0.5
3,788,899 + CA264_16280 0.39 -0.9
3,788,972 - CA264_16280 0.44 -0.3
3,788,975 + CA264_16280 0.44 +0.3
3,788,993 + CA264_16280 0.45 +0.2
3,789,160 + CA264_16280 0.56 -0.7
3,789,161 - CA264_16280 0.56 -0.3
3,789,253 + CA264_16280 0.62 -0.1
3,789,253 + CA264_16280 0.62 -0.2
3,789,254 - CA264_16280 0.62 -0.2
3,789,254 - CA264_16280 0.62 +1.1
3,789,254 - CA264_16280 0.62 +0.5
3,789,388 - CA264_16280 0.71 +0.1
3,789,392 + CA264_16280 0.71 -0.3
3,789,420 + CA264_16280 0.73 -0.6
3,789,467 + CA264_16280 0.76 -0.1
3,789,526 + CA264_16280 0.80 +0.8
3,789,526 + CA264_16280 0.80 +0.1
3,789,526 + CA264_16280 0.80 -0.4
3,789,526 + CA264_16280 0.80 -0.2
3,789,527 - CA264_16280 0.80 -0.1
3,789,580 + CA264_16280 0.84 -0.8
3,789,580 + CA264_16280 0.84 +0.6
3,789,581 - CA264_16280 0.84 -0.1
3,789,581 - CA264_16280 0.84 -0.4
3,789,703 + -0.5
3,789,703 + +1.0
3,789,703 + -1.0
3,789,704 - +0.1
3,789,704 - -1.0
3,789,735 - +0.1
3,789,735 - +0.3
3,789,830 + +0.8
3,789,879 + -0.1
3,789,879 + -0.9
3,789,879 + -0.3
3,789,880 - -0.3
3,789,882 + -0.7
3,789,884 + +0.1
3,789,997 - CA264_16285 0.21 -0.1
3,790,083 + CA264_16285 0.31 -0.8
3,790,083 + CA264_16285 0.31 +0.0
3,790,089 + CA264_16285 0.31 -0.1
3,790,090 - CA264_16285 0.32 -0.2
3,790,090 - CA264_16285 0.32 -0.6
3,790,227 + CA264_16285 0.47 +1.2
3,790,352 + CA264_16285 0.61 +0.8
3,790,375 - CA264_16285 0.63 -1.0
3,790,397 - CA264_16285 0.66 -0.7
3,790,400 + CA264_16285 0.66 -0.0
3,790,401 - CA264_16285 0.66 +0.1
3,790,463 + CA264_16285 0.73 -0.5
3,790,513 - CA264_16285 0.79 -0.1
3,790,581 + CA264_16285 0.86 -0.6
3,790,709 - -0.3
3,790,808 - -0.8

Or see this region's nucleotide sequence