Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13010

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13005 and CA264_13010 are separated by 123 nucleotidesCA264_13010 and CA264_13015 are separated by 87 nucleotides CA264_13005: CA264_13005 - hypothetical protein, at 3,030,950 to 3,031,996 _13005 CA264_13010: CA264_13010 - DNA-binding response regulator, at 3,032,120 to 3,032,857 _13010 CA264_13015: CA264_13015 - sensor histidine kinase, at 3,032,945 to 3,034,048 _13015 Position (kb) 3032 3033Strain fitness (log2 ratio) -2 -1 0 1at 3031.282 kb on - strand, within CA264_13005at 3031.377 kb on + strand, within CA264_13005at 3031.381 kb on + strand, within CA264_13005at 3031.381 kb on + strand, within CA264_13005at 3031.381 kb on + strand, within CA264_13005at 3031.383 kb on + strand, within CA264_13005at 3031.383 kb on + strand, within CA264_13005at 3031.383 kb on + strand, within CA264_13005at 3031.384 kb on - strand, within CA264_13005at 3031.434 kb on - strand, within CA264_13005at 3031.520 kb on - strand, within CA264_13005at 3031.520 kb on - strand, within CA264_13005at 3031.520 kb on - strand, within CA264_13005at 3031.548 kb on - strand, within CA264_13005at 3031.579 kb on + strand, within CA264_13005at 3031.580 kb on - strand, within CA264_13005at 3031.580 kb on - strand, within CA264_13005at 3031.642 kb on - strand, within CA264_13005at 3031.642 kb on - strand, within CA264_13005at 3031.722 kb on + strand, within CA264_13005at 3031.722 kb on + strand, within CA264_13005at 3031.723 kb on - strand, within CA264_13005at 3031.744 kb on + strand, within CA264_13005at 3031.744 kb on + strand, within CA264_13005at 3031.819 kb on - strand, within CA264_13005at 3031.863 kb on + strand, within CA264_13005at 3031.864 kb on - strand, within CA264_13005at 3031.929 kb on + strandat 3031.929 kb on + strandat 3031.932 kb on + strandat 3032.008 kb on + strandat 3032.022 kb on + strandat 3032.040 kb on + strandat 3032.053 kb on - strandat 3032.098 kb on + strandat 3032.121 kb on + strandat 3032.170 kb on + strandat 3032.234 kb on + strand, within CA264_13010at 3032.322 kb on + strand, within CA264_13010at 3032.322 kb on + strand, within CA264_13010at 3032.323 kb on - strand, within CA264_13010at 3032.327 kb on + strand, within CA264_13010at 3032.327 kb on + strand, within CA264_13010at 3032.328 kb on - strand, within CA264_13010at 3032.361 kb on + strand, within CA264_13010at 3032.362 kb on - strand, within CA264_13010at 3032.362 kb on - strand, within CA264_13010at 3032.362 kb on - strand, within CA264_13010at 3032.437 kb on + strand, within CA264_13010at 3032.437 kb on + strand, within CA264_13010at 3032.437 kb on + strand, within CA264_13010at 3032.438 kb on - strand, within CA264_13010at 3032.438 kb on - strand, within CA264_13010at 3032.438 kb on - strand, within CA264_13010at 3032.450 kb on - strand, within CA264_13010at 3032.450 kb on - strand, within CA264_13010at 3032.568 kb on + strand, within CA264_13010at 3032.568 kb on + strand, within CA264_13010at 3032.604 kb on + strand, within CA264_13010at 3032.605 kb on - strand, within CA264_13010at 3032.842 kb on + strandat 3032.842 kb on + strandat 3032.842 kb on + strandat 3032.850 kb on - strandat 3032.937 kb on + strandat 3032.937 kb on + strandat 3032.951 kb on + strandat 3032.951 kb on + strandat 3032.952 kb on - strandat 3032.954 kb on + strandat 3033.254 kb on + strand, within CA264_13015at 3033.256 kb on + strand, within CA264_13015at 3033.321 kb on + strand, within CA264_13015at 3033.333 kb on + strand, within CA264_13015at 3033.378 kb on + strand, within CA264_13015at 3033.378 kb on + strand, within CA264_13015at 3033.378 kb on + strand, within CA264_13015at 3033.388 kb on - strand, within CA264_13015at 3033.457 kb on - strand, within CA264_13015at 3033.467 kb on - strand, within CA264_13015at 3033.615 kb on + strand, within CA264_13015at 3033.615 kb on + strand, within CA264_13015at 3033.616 kb on - strand, within CA264_13015at 3033.625 kb on + strand, within CA264_13015at 3033.625 kb on + strand, within CA264_13015at 3033.625 kb on + strand, within CA264_13015at 3033.626 kb on - strand, within CA264_13015at 3033.626 kb on - strand, within CA264_13015at 3033.648 kb on + strand, within CA264_13015at 3033.649 kb on - strand, within CA264_13015at 3033.781 kb on - strand, within CA264_13015at 3033.798 kb on + strand, within CA264_13015at 3033.813 kb on + strand, within CA264_13015at 3033.814 kb on - strand, within CA264_13015at 3033.816 kb on + strand, within CA264_13015at 3033.823 kb on + strand, within CA264_13015at 3033.824 kb on - strand, within CA264_13015

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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3,031,282 - CA264_13005 0.32 +0.2
3,031,377 + CA264_13005 0.41 -0.3
3,031,381 + CA264_13005 0.41 -0.1
3,031,381 + CA264_13005 0.41 -0.6
3,031,381 + CA264_13005 0.41 +0.2
3,031,383 + CA264_13005 0.41 +0.1
3,031,383 + CA264_13005 0.41 -0.4
3,031,383 + CA264_13005 0.41 -0.2
3,031,384 - CA264_13005 0.41 +0.1
3,031,434 - CA264_13005 0.46 -0.2
3,031,520 - CA264_13005 0.54 -0.0
3,031,520 - CA264_13005 0.54 -0.4
3,031,520 - CA264_13005 0.54 -0.9
3,031,548 - CA264_13005 0.57 +0.2
3,031,579 + CA264_13005 0.60 +0.1
3,031,580 - CA264_13005 0.60 +1.5
3,031,580 - CA264_13005 0.60 -1.1
3,031,642 - CA264_13005 0.66 +0.3
3,031,642 - CA264_13005 0.66 -1.1
3,031,722 + CA264_13005 0.74 +0.1
3,031,722 + CA264_13005 0.74 +0.4
3,031,723 - CA264_13005 0.74 +0.1
3,031,744 + CA264_13005 0.76 -0.3
3,031,744 + CA264_13005 0.76 -0.4
3,031,819 - CA264_13005 0.83 -0.1
3,031,863 + CA264_13005 0.87 -0.5
3,031,864 - CA264_13005 0.87 -1.1
3,031,929 + +0.8
3,031,929 + -0.3
3,031,932 + -0.5
3,032,008 + -0.4
3,032,022 + -0.4
3,032,040 + -0.3
3,032,053 - +0.8
3,032,098 + -0.0
3,032,121 + -0.7
3,032,170 + +1.1
3,032,234 + CA264_13010 0.15 -1.8
3,032,322 + CA264_13010 0.27 -0.2
3,032,322 + CA264_13010 0.27 -0.4
3,032,323 - CA264_13010 0.28 -1.3
3,032,327 + CA264_13010 0.28 -0.4
3,032,327 + CA264_13010 0.28 -1.5
3,032,328 - CA264_13010 0.28 -0.9
3,032,361 + CA264_13010 0.33 -0.2
3,032,362 - CA264_13010 0.33 -0.7
3,032,362 - CA264_13010 0.33 -0.8
3,032,362 - CA264_13010 0.33 -0.3
3,032,437 + CA264_13010 0.43 +0.7
3,032,437 + CA264_13010 0.43 -0.3
3,032,437 + CA264_13010 0.43 -0.7
3,032,438 - CA264_13010 0.43 -1.0
3,032,438 - CA264_13010 0.43 -1.2
3,032,438 - CA264_13010 0.43 -0.3
3,032,450 - CA264_13010 0.45 -0.6
3,032,450 - CA264_13010 0.45 +0.8
3,032,568 + CA264_13010 0.61 +0.3
3,032,568 + CA264_13010 0.61 -1.0
3,032,604 + CA264_13010 0.66 -0.1
3,032,605 - CA264_13010 0.66 -0.5
3,032,842 + +0.0
3,032,842 + -0.1
3,032,842 + -1.6
3,032,850 - -0.5
3,032,937 + -0.3
3,032,937 + +0.1
3,032,951 + +0.1
3,032,951 + +0.0
3,032,952 - -0.6
3,032,954 + +0.0
3,033,254 + CA264_13015 0.28 +0.7
3,033,256 + CA264_13015 0.28 -0.4
3,033,321 + CA264_13015 0.34 -0.2
3,033,333 + CA264_13015 0.35 -0.1
3,033,378 + CA264_13015 0.39 +0.0
3,033,378 + CA264_13015 0.39 +0.2
3,033,378 + CA264_13015 0.39 +0.3
3,033,388 - CA264_13015 0.40 -0.6
3,033,457 - CA264_13015 0.46 +0.6
3,033,467 - CA264_13015 0.47 -0.6
3,033,615 + CA264_13015 0.61 -0.0
3,033,615 + CA264_13015 0.61 -0.2
3,033,616 - CA264_13015 0.61 +0.4
3,033,625 + CA264_13015 0.62 +0.2
3,033,625 + CA264_13015 0.62 +0.5
3,033,625 + CA264_13015 0.62 +0.7
3,033,626 - CA264_13015 0.62 -2.1
3,033,626 - CA264_13015 0.62 +0.1
3,033,648 + CA264_13015 0.64 -1.7
3,033,649 - CA264_13015 0.64 +0.4
3,033,781 - CA264_13015 0.76 -0.1
3,033,798 + CA264_13015 0.77 -0.1
3,033,813 + CA264_13015 0.79 +1.2
3,033,814 - CA264_13015 0.79 -0.5
3,033,816 + CA264_13015 0.79 +0.3
3,033,823 + CA264_13015 0.80 +0.2
3,033,824 - CA264_13015 0.80 +0.3

Or see this region's nucleotide sequence