Experiment: m.b. Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12870 and CA264_12875 are separated by 445 nucleotides CA264_12875 and CA264_12880 are separated by 248 nucleotides
CA264_12870: CA264_12870 - deoxynucleoside kinase, at 2,999,201 to 2,999,815
_12870
CA264_12875: CA264_12875 - hypothetical protein, at 3,000,261 to 3,000,869
_12875
CA264_12880: CA264_12880 - GAF domain-containing protein, at 3,001,118 to 3,003,556
_12880
Position (kb)
3000
3001 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2999.332 kb on + strand, within CA264_12870 at 2999.337 kb on + strand, within CA264_12870 at 2999.337 kb on + strand, within CA264_12870 at 2999.338 kb on - strand, within CA264_12870 at 2999.338 kb on - strand, within CA264_12870 at 2999.365 kb on + strand, within CA264_12870 at 2999.365 kb on + strand, within CA264_12870 at 2999.366 kb on - strand, within CA264_12870 at 2999.443 kb on - strand, within CA264_12870 at 2999.499 kb on + strand, within CA264_12870 at 2999.500 kb on - strand, within CA264_12870 at 2999.500 kb on - strand, within CA264_12870 at 2999.704 kb on - strand, within CA264_12870 at 2999.714 kb on - strand, within CA264_12870 at 2999.730 kb on + strand, within CA264_12870 at 2999.732 kb on + strand, within CA264_12870 at 2999.733 kb on - strand, within CA264_12870 at 2999.744 kb on - strand, within CA264_12870 at 2999.818 kb on + strand at 2999.819 kb on - strand at 2999.835 kb on + strand at 2999.920 kb on + strand at 2999.921 kb on - strand at 2999.921 kb on - strand at 2999.963 kb on - strand at 2999.963 kb on - strand at 2999.989 kb on + strand at 3000.005 kb on - strand at 3000.164 kb on + strand at 3000.172 kb on + strand at 3000.191 kb on + strand at 3000.218 kb on + strand at 3000.218 kb on + strand at 3000.219 kb on - strand at 3000.219 kb on - strand at 3000.219 kb on - strand at 3000.372 kb on + strand, within CA264_12875 at 3000.414 kb on + strand, within CA264_12875 at 3000.430 kb on + strand, within CA264_12875 at 3000.431 kb on - strand, within CA264_12875 at 3000.476 kb on - strand, within CA264_12875 at 3000.497 kb on + strand, within CA264_12875 at 3000.519 kb on + strand, within CA264_12875 at 3000.519 kb on + strand, within CA264_12875 at 3000.520 kb on - strand, within CA264_12875 at 3000.552 kb on - strand, within CA264_12875 at 3000.638 kb on - strand, within CA264_12875 at 3000.638 kb on - strand, within CA264_12875 at 3000.697 kb on + strand, within CA264_12875 at 3000.697 kb on + strand, within CA264_12875 at 3000.918 kb on + strand at 3000.952 kb on + strand at 3000.954 kb on + strand at 3001.005 kb on - strand at 3001.005 kb on - strand at 3001.009 kb on + strand at 3001.010 kb on - strand at 3001.014 kb on + strand at 3001.014 kb on + strand at 3001.015 kb on - strand at 3001.057 kb on - strand at 3001.067 kb on + strand at 3001.084 kb on + strand at 3001.092 kb on - strand at 3001.114 kb on + strand at 3001.114 kb on + strand at 3001.114 kb on + strand at 3001.114 kb on + strand at 3001.115 kb on - strand at 3001.115 kb on - strand at 3001.115 kb on - strand at 3001.115 kb on - strand at 3001.115 kb on - strand at 3001.115 kb on - strand at 3001.118 kb on - strand at 3001.118 kb on - strand at 3001.124 kb on - strand at 3001.124 kb on - strand at 3001.237 kb on + strand at 3001.238 kb on - strand at 3001.244 kb on + strand at 3001.245 kb on - strand at 3001.357 kb on + strand at 3001.370 kb on + strand, within CA264_12880 at 3001.371 kb on - strand, within CA264_12880 at 3001.371 kb on - strand, within CA264_12880 at 3001.521 kb on - strand, within CA264_12880 at 3001.535 kb on - strand, within CA264_12880 at 3001.713 kb on + strand, within CA264_12880 at 3001.714 kb on - strand, within CA264_12880 at 3001.756 kb on - strand, within CA264_12880 at 3001.756 kb on - strand, within CA264_12880
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM remove 2,999,332 + CA264_12870 0.21 -1.1 2,999,337 + CA264_12870 0.22 +0.6 2,999,337 + CA264_12870 0.22 +0.6 2,999,338 - CA264_12870 0.22 +0.4 2,999,338 - CA264_12870 0.22 -0.4 2,999,365 + CA264_12870 0.27 -0.4 2,999,365 + CA264_12870 0.27 +0.3 2,999,366 - CA264_12870 0.27 -0.6 2,999,443 - CA264_12870 0.39 -0.4 2,999,499 + CA264_12870 0.48 +0.3 2,999,500 - CA264_12870 0.49 +0.2 2,999,500 - CA264_12870 0.49 +0.5 2,999,704 - CA264_12870 0.82 +0.6 2,999,714 - CA264_12870 0.83 -1.0 2,999,730 + CA264_12870 0.86 +0.3 2,999,732 + CA264_12870 0.86 -0.3 2,999,733 - CA264_12870 0.87 -0.6 2,999,744 - CA264_12870 0.88 -0.4 2,999,818 + +0.2 2,999,819 - -0.0 2,999,835 + -0.1 2,999,920 + +0.3 2,999,921 - -0.1 2,999,921 - -0.3 2,999,963 - -0.6 2,999,963 - +0.1 2,999,989 + +0.0 3,000,005 - -0.6 3,000,164 + +0.2 3,000,172 + -0.2 3,000,191 + +0.4 3,000,218 + +0.2 3,000,218 + -0.8 3,000,219 - -0.3 3,000,219 - +1.5 3,000,219 - -0.1 3,000,372 + CA264_12875 0.18 +0.1 3,000,414 + CA264_12875 0.25 -0.6 3,000,430 + CA264_12875 0.28 +2.0 3,000,431 - CA264_12875 0.28 -0.2 3,000,476 - CA264_12875 0.35 -0.4 3,000,497 + CA264_12875 0.39 -1.3 3,000,519 + CA264_12875 0.42 -1.4 3,000,519 + CA264_12875 0.42 +0.4 3,000,520 - CA264_12875 0.43 -0.5 3,000,552 - CA264_12875 0.48 -1.6 3,000,638 - CA264_12875 0.62 +0.1 3,000,638 - CA264_12875 0.62 -0.3 3,000,697 + CA264_12875 0.72 -0.2 3,000,697 + CA264_12875 0.72 +0.2 3,000,918 + -0.7 3,000,952 + -0.4 3,000,954 + -0.1 3,001,005 - -0.5 3,001,005 - +0.0 3,001,009 + +0.5 3,001,010 - -0.5 3,001,014 + -1.3 3,001,014 + +0.5 3,001,015 - -1.5 3,001,057 - +0.3 3,001,067 + -0.0 3,001,084 + -0.3 3,001,092 - -0.1 3,001,114 + -0.9 3,001,114 + -0.3 3,001,114 + +0.3 3,001,114 + -0.5 3,001,115 - -0.2 3,001,115 - -0.1 3,001,115 - +0.4 3,001,115 - -0.2 3,001,115 - +0.4 3,001,115 - -1.8 3,001,118 - +0.4 3,001,118 - -0.3 3,001,124 - +0.6 3,001,124 - -0.2 3,001,237 + -0.4 3,001,238 - -0.2 3,001,244 + -0.3 3,001,245 - -0.3 3,001,357 + +0.6 3,001,370 + CA264_12880 0.10 -0.3 3,001,371 - CA264_12880 0.10 +0.4 3,001,371 - CA264_12880 0.10 +0.1 3,001,521 - CA264_12880 0.17 +0.1 3,001,535 - CA264_12880 0.17 +0.0 3,001,713 + CA264_12880 0.24 -0.6 3,001,714 - CA264_12880 0.24 -0.0 3,001,756 - CA264_12880 0.26 +0.5 3,001,756 - CA264_12880 0.26 +0.0
Or see this region's nucleotide sequence