Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12320

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12315 and CA264_12320 are separated by 41 nucleotidesCA264_12320 and CA264_12325 are separated by 184 nucleotides CA264_12315: CA264_12315 - fumarylacetoacetase, at 2,869,068 to 2,870,339 _12315 CA264_12320: CA264_12320 - flavin reductase, at 2,870,381 to 2,871,286 _12320 CA264_12325: CA264_12325 - polysaccharide biosynthesis protein, at 2,871,471 to 2,873,402 _12325 Position (kb) 2870 2871 2872Strain fitness (log2 ratio) -3 -2 -1 0 1at 2869.448 kb on - strand, within CA264_12315at 2869.524 kb on - strand, within CA264_12315at 2869.567 kb on - strand, within CA264_12315at 2869.609 kb on + strand, within CA264_12315at 2869.610 kb on - strand, within CA264_12315at 2869.763 kb on + strand, within CA264_12315at 2869.822 kb on - strand, within CA264_12315at 2869.913 kb on - strand, within CA264_12315at 2869.948 kb on - strand, within CA264_12315at 2869.969 kb on - strand, within CA264_12315at 2869.975 kb on - strand, within CA264_12315at 2870.044 kb on - strand, within CA264_12315at 2870.052 kb on - strand, within CA264_12315at 2870.124 kb on + strand, within CA264_12315at 2870.124 kb on + strand, within CA264_12315at 2870.183 kb on + strand, within CA264_12315at 2870.338 kb on - strandat 2870.369 kb on + strandat 2870.436 kb on + strandat 2870.436 kb on + strandat 2870.528 kb on - strand, within CA264_12320at 2870.686 kb on + strand, within CA264_12320at 2870.687 kb on - strand, within CA264_12320at 2870.687 kb on - strand, within CA264_12320at 2870.693 kb on + strand, within CA264_12320at 2870.693 kb on + strand, within CA264_12320at 2870.717 kb on - strand, within CA264_12320at 2870.918 kb on + strand, within CA264_12320at 2871.018 kb on + strand, within CA264_12320at 2871.155 kb on + strand, within CA264_12320at 2871.156 kb on - strand, within CA264_12320at 2871.171 kb on - strand, within CA264_12320at 2871.171 kb on - strand, within CA264_12320at 2871.171 kb on - strand, within CA264_12320at 2871.285 kb on - strandat 2871.345 kb on + strandat 2871.345 kb on + strandat 2871.345 kb on + strandat 2871.399 kb on - strandat 2871.399 kb on - strandat 2871.399 kb on - strandat 2871.406 kb on + strandat 2871.407 kb on - strandat 2871.407 kb on - strandat 2871.408 kb on + strandat 2871.448 kb on + strandat 2871.448 kb on + strandat 2871.449 kb on - strandat 2871.449 kb on - strandat 2871.450 kb on + strandat 2871.456 kb on + strandat 2871.456 kb on + strandat 2871.456 kb on + strandat 2871.456 kb on + strandat 2871.456 kb on + strandat 2871.456 kb on + strandat 2871.456 kb on + strandat 2871.457 kb on - strandat 2871.472 kb on + strandat 2871.473 kb on - strandat 2871.478 kb on - strandat 2871.478 kb on - strandat 2871.521 kb on - strandat 2871.521 kb on - strandat 2871.597 kb on + strandat 2871.597 kb on + strandat 2871.598 kb on - strandat 2871.619 kb on + strandat 2871.619 kb on + strandat 2871.626 kb on - strandat 2871.745 kb on - strand, within CA264_12325at 2871.751 kb on - strand, within CA264_12325at 2871.755 kb on + strand, within CA264_12325at 2871.762 kb on - strand, within CA264_12325at 2871.785 kb on + strand, within CA264_12325at 2871.830 kb on + strand, within CA264_12325at 2871.899 kb on + strand, within CA264_12325at 2871.900 kb on - strand, within CA264_12325at 2871.900 kb on - strand, within CA264_12325at 2871.912 kb on + strand, within CA264_12325at 2872.098 kb on + strand, within CA264_12325at 2872.102 kb on + strand, within CA264_12325at 2872.197 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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2,869,448 - CA264_12315 0.30 -2.8
2,869,524 - CA264_12315 0.36 -0.5
2,869,567 - CA264_12315 0.39 -1.1
2,869,609 + CA264_12315 0.43 -1.0
2,869,610 - CA264_12315 0.43 -0.2
2,869,763 + CA264_12315 0.55 +0.2
2,869,822 - CA264_12315 0.59 -2.3
2,869,913 - CA264_12315 0.66 -2.3
2,869,948 - CA264_12315 0.69 -0.2
2,869,969 - CA264_12315 0.71 -1.6
2,869,975 - CA264_12315 0.71 -1.5
2,870,044 - CA264_12315 0.77 -1.9
2,870,052 - CA264_12315 0.77 -1.3
2,870,124 + CA264_12315 0.83 +0.1
2,870,124 + CA264_12315 0.83 -1.4
2,870,183 + CA264_12315 0.88 +0.5
2,870,338 - -0.1
2,870,369 + -0.6
2,870,436 + +0.1
2,870,436 + +0.7
2,870,528 - CA264_12320 0.16 +0.2
2,870,686 + CA264_12320 0.34 -0.1
2,870,687 - CA264_12320 0.34 -0.2
2,870,687 - CA264_12320 0.34 +0.5
2,870,693 + CA264_12320 0.34 -0.4
2,870,693 + CA264_12320 0.34 -0.1
2,870,717 - CA264_12320 0.37 +0.0
2,870,918 + CA264_12320 0.59 -0.3
2,871,018 + CA264_12320 0.70 +0.1
2,871,155 + CA264_12320 0.85 -0.0
2,871,156 - CA264_12320 0.86 -2.1
2,871,171 - CA264_12320 0.87 -0.4
2,871,171 - CA264_12320 0.87 -0.2
2,871,171 - CA264_12320 0.87 -0.1
2,871,285 - -0.3
2,871,345 + -0.3
2,871,345 + -0.9
2,871,345 + +0.5
2,871,399 - +0.6
2,871,399 - -1.1
2,871,399 - -2.7
2,871,406 + +0.2
2,871,407 - +1.2
2,871,407 - -0.4
2,871,408 + -0.1
2,871,448 + +0.7
2,871,448 + +0.5
2,871,449 - -0.4
2,871,449 - -0.5
2,871,450 + -1.7
2,871,456 + +1.0
2,871,456 + +1.2
2,871,456 + +0.4
2,871,456 + -0.2
2,871,456 + -0.0
2,871,456 + +0.0
2,871,456 + +0.3
2,871,457 - +0.1
2,871,472 + +0.4
2,871,473 - -1.1
2,871,478 - +0.2
2,871,478 - +0.0
2,871,521 - -0.6
2,871,521 - +0.3
2,871,597 + +1.3
2,871,597 + +0.1
2,871,598 - +0.0
2,871,619 + +0.1
2,871,619 + +0.4
2,871,626 - +1.0
2,871,745 - CA264_12325 0.14 +0.3
2,871,751 - CA264_12325 0.14 +1.1
2,871,755 + CA264_12325 0.15 +1.0
2,871,762 - CA264_12325 0.15 +0.5
2,871,785 + CA264_12325 0.16 +0.4
2,871,830 + CA264_12325 0.19 -2.3
2,871,899 + CA264_12325 0.22 +0.7
2,871,900 - CA264_12325 0.22 +0.8
2,871,900 - CA264_12325 0.22 +0.4
2,871,912 + CA264_12325 0.23 -0.9
2,872,098 + CA264_12325 0.32 -1.1
2,872,102 + CA264_12325 0.33 -0.2
2,872,197 - +0.3

Or see this region's nucleotide sequence