Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_12280

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_12275 and CA264_12280 are separated by 563 nucleotidesCA264_12280 and CA264_12285 overlap by 26 nucleotidesCA264_12285 and CA264_12290 are separated by 156 nucleotides CA264_12275: CA264_12275 - hypothetical protein, at 2,859,626 to 2,863,495 _12275 CA264_12280: CA264_12280 - hypothetical protein, at 2,864,059 to 2,864,439 _12280 CA264_12285: CA264_12285 - hypothetical protein, at 2,864,414 to 2,865,217 _12285 CA264_12290: CA264_12290 - hypothetical protein, at 2,865,374 to 2,865,997 _12290 Position (kb) 2864 2865Strain fitness (log2 ratio) -1 0 1at 2863.081 kb on - strand, within CA264_12275at 2863.115 kb on - strandat 2863.166 kb on + strandat 2863.167 kb on - strandat 2863.179 kb on - strandat 2863.205 kb on - strandat 2863.251 kb on + strandat 2863.252 kb on - strandat 2863.457 kb on + strandat 2863.463 kb on + strandat 2863.463 kb on + strandat 2863.464 kb on - strandat 2863.464 kb on - strandat 2863.467 kb on + strandat 2863.467 kb on + strandat 2863.468 kb on - strandat 2863.468 kb on - strandat 2863.536 kb on - strandat 2863.543 kb on + strandat 2863.543 kb on + strandat 2863.563 kb on + strandat 2863.564 kb on - strandat 2863.584 kb on + strandat 2863.585 kb on - strandat 2863.611 kb on - strandat 2863.617 kb on - strandat 2863.640 kb on - strandat 2863.640 kb on - strandat 2863.669 kb on + strandat 2863.669 kb on + strandat 2863.695 kb on + strandat 2863.709 kb on - strandat 2863.850 kb on - strandat 2863.892 kb on + strandat 2864.051 kb on + strandat 2864.051 kb on + strandat 2864.051 kb on + strandat 2864.052 kb on - strandat 2864.052 kb on - strandat 2864.139 kb on - strand, within CA264_12280at 2864.397 kb on - strand, within CA264_12280at 2864.401 kb on + strand, within CA264_12280at 2864.401 kb on + strand, within CA264_12280at 2864.463 kb on - strandat 2864.632 kb on - strand, within CA264_12285at 2864.643 kb on + strand, within CA264_12285at 2864.644 kb on - strand, within CA264_12285at 2864.644 kb on - strand, within CA264_12285at 2864.644 kb on - strand, within CA264_12285at 2864.666 kb on + strand, within CA264_12285at 2864.699 kb on + strand, within CA264_12285at 2864.737 kb on + strand, within CA264_12285at 2864.739 kb on + strand, within CA264_12285at 2864.739 kb on + strand, within CA264_12285at 2864.739 kb on + strand, within CA264_12285at 2864.773 kb on + strand, within CA264_12285at 2864.773 kb on + strand, within CA264_12285at 2864.811 kb on + strand, within CA264_12285at 2864.817 kb on + strand, within CA264_12285at 2864.817 kb on + strand, within CA264_12285at 2864.847 kb on - strand, within CA264_12285at 2864.851 kb on + strand, within CA264_12285at 2864.852 kb on - strand, within CA264_12285at 2864.852 kb on - strand, within CA264_12285at 2864.999 kb on - strand, within CA264_12285at 2865.052 kb on + strand, within CA264_12285at 2865.087 kb on + strand, within CA264_12285at 2865.088 kb on - strand, within CA264_12285at 2865.088 kb on - strand, within CA264_12285at 2865.088 kb on - strand, within CA264_12285at 2865.100 kb on - strand, within CA264_12285at 2865.258 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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2,863,081 - CA264_12275 0.89 +0.3
2,863,115 - +0.0
2,863,166 + +0.1
2,863,167 - -0.1
2,863,179 - -0.8
2,863,205 - -0.9
2,863,251 + +0.2
2,863,252 - -0.1
2,863,457 + -0.6
2,863,463 + -0.6
2,863,463 + -0.9
2,863,464 - +0.4
2,863,464 - -1.5
2,863,467 + -0.0
2,863,467 + +0.1
2,863,468 - +0.0
2,863,468 - -1.0
2,863,536 - -0.9
2,863,543 + -0.1
2,863,543 + +0.2
2,863,563 + +0.4
2,863,564 - +0.4
2,863,584 + -0.0
2,863,585 - +0.9
2,863,611 - -1.6
2,863,617 - -0.8
2,863,640 - -1.0
2,863,640 - -0.0
2,863,669 + -0.4
2,863,669 + +0.1
2,863,695 + +0.5
2,863,709 - -0.6
2,863,850 - -0.3
2,863,892 + +0.0
2,864,051 + -0.8
2,864,051 + -0.7
2,864,051 + +0.1
2,864,052 - -0.5
2,864,052 - -1.2
2,864,139 - CA264_12280 0.21 -0.5
2,864,397 - CA264_12280 0.89 -0.8
2,864,401 + CA264_12280 0.90 +0.0
2,864,401 + CA264_12280 0.90 +0.5
2,864,463 - -0.0
2,864,632 - CA264_12285 0.27 -0.7
2,864,643 + CA264_12285 0.28 -0.3
2,864,644 - CA264_12285 0.29 -0.1
2,864,644 - CA264_12285 0.29 +0.1
2,864,644 - CA264_12285 0.29 -0.7
2,864,666 + CA264_12285 0.31 -0.5
2,864,699 + CA264_12285 0.35 -0.1
2,864,737 + CA264_12285 0.40 -0.7
2,864,739 + CA264_12285 0.40 +0.2
2,864,739 + CA264_12285 0.40 -0.9
2,864,739 + CA264_12285 0.40 +0.7
2,864,773 + CA264_12285 0.45 -1.5
2,864,773 + CA264_12285 0.45 -0.7
2,864,811 + CA264_12285 0.49 -1.0
2,864,817 + CA264_12285 0.50 -0.7
2,864,817 + CA264_12285 0.50 -0.4
2,864,847 - CA264_12285 0.54 -0.4
2,864,851 + CA264_12285 0.54 -0.6
2,864,852 - CA264_12285 0.54 -1.1
2,864,852 - CA264_12285 0.54 -0.9
2,864,999 - CA264_12285 0.73 +0.3
2,865,052 + CA264_12285 0.79 +0.7
2,865,087 + CA264_12285 0.84 +0.4
2,865,088 - CA264_12285 0.84 -0.1
2,865,088 - CA264_12285 0.84 +0.7
2,865,088 - CA264_12285 0.84 -0.1
2,865,100 - CA264_12285 0.85 -1.4
2,865,258 - -0.5

Or see this region's nucleotide sequence