Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_10125

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_10120 and CA264_10125 are separated by 513 nucleotidesCA264_10125 and CA264_10130 are separated by 317 nucleotides CA264_10120: CA264_10120 - hypothetical protein, at 2,347,095 to 2,347,814 _10120 CA264_10125: CA264_10125 - hypothetical protein, at 2,348,328 to 2,349,182 _10125 CA264_10130: CA264_10130 - TonB-dependent receptor, at 2,349,500 to 2,351,926 _10130 Position (kb) 2348 2349 2350Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2347.331 kb on - strand, within CA264_10120at 2347.407 kb on + strand, within CA264_10120at 2347.407 kb on + strand, within CA264_10120at 2347.561 kb on + strand, within CA264_10120at 2347.710 kb on - strand, within CA264_10120at 2347.710 kb on - strand, within CA264_10120at 2347.710 kb on - strand, within CA264_10120at 2347.710 kb on - strand, within CA264_10120at 2347.759 kb on + strandat 2347.760 kb on - strandat 2347.760 kb on - strandat 2347.772 kb on + strandat 2347.772 kb on + strandat 2347.805 kb on + strandat 2347.805 kb on + strandat 2347.806 kb on - strandat 2347.808 kb on + strandat 2347.808 kb on + strandat 2347.809 kb on - strandat 2347.815 kb on - strandat 2347.815 kb on - strandat 2347.825 kb on + strandat 2347.825 kb on + strandat 2347.909 kb on + strandat 2347.909 kb on + strandat 2347.935 kb on + strandat 2347.967 kb on + strandat 2347.976 kb on + strandat 2347.977 kb on - strandat 2348.028 kb on - strandat 2348.207 kb on - strandat 2348.240 kb on + strandat 2348.241 kb on - strandat 2348.241 kb on - strandat 2348.241 kb on - strandat 2348.241 kb on - strandat 2348.241 kb on - strandat 2348.241 kb on - strandat 2348.284 kb on - strandat 2348.312 kb on + strandat 2348.313 kb on - strandat 2348.369 kb on - strandat 2348.414 kb on + strand, within CA264_10125at 2348.414 kb on + strand, within CA264_10125at 2348.415 kb on - strand, within CA264_10125at 2348.452 kb on + strand, within CA264_10125at 2348.452 kb on + strand, within CA264_10125at 2348.452 kb on + strand, within CA264_10125at 2348.453 kb on - strand, within CA264_10125at 2348.502 kb on + strand, within CA264_10125at 2348.503 kb on - strand, within CA264_10125at 2348.542 kb on + strand, within CA264_10125at 2348.581 kb on + strand, within CA264_10125at 2348.581 kb on + strand, within CA264_10125at 2348.602 kb on + strand, within CA264_10125at 2348.602 kb on + strand, within CA264_10125at 2348.602 kb on + strand, within CA264_10125at 2348.602 kb on + strand, within CA264_10125at 2348.708 kb on - strand, within CA264_10125at 2348.776 kb on + strand, within CA264_10125at 2348.817 kb on - strand, within CA264_10125at 2348.843 kb on + strand, within CA264_10125at 2348.884 kb on + strand, within CA264_10125at 2348.884 kb on + strand, within CA264_10125at 2348.885 kb on - strand, within CA264_10125at 2348.998 kb on + strand, within CA264_10125at 2349.119 kb on + strandat 2349.142 kb on - strandat 2349.146 kb on + strandat 2349.146 kb on + strandat 2349.147 kb on - strandat 2349.147 kb on - strandat 2349.147 kb on - strandat 2349.182 kb on + strandat 2349.182 kb on + strandat 2349.183 kb on - strandat 2349.183 kb on - strandat 2349.183 kb on - strandat 2349.183 kb on - strandat 2349.183 kb on - strandat 2349.186 kb on + strandat 2349.187 kb on - strandat 2349.187 kb on - strandat 2349.187 kb on - strandat 2349.187 kb on - strandat 2349.201 kb on - strandat 2349.201 kb on - strandat 2349.226 kb on + strandat 2349.227 kb on - strandat 2349.286 kb on + strandat 2349.286 kb on + strandat 2349.296 kb on - strandat 2349.300 kb on + strandat 2349.300 kb on + strandat 2349.300 kb on + strandat 2349.318 kb on - strandat 2349.388 kb on - strandat 2349.397 kb on + strandat 2349.398 kb on - strandat 2349.398 kb on - strandat 2349.422 kb on + strandat 2349.484 kb on + strandat 2349.485 kb on - strandat 2349.485 kb on - strandat 2349.485 kb on - strandat 2349.594 kb on - strandat 2349.618 kb on + strandat 2349.619 kb on - strandat 2349.647 kb on + strandat 2349.680 kb on - strandat 2349.683 kb on + strandat 2349.685 kb on + strandat 2349.685 kb on + strandat 2349.685 kb on + strandat 2349.760 kb on + strand, within CA264_10130at 2349.915 kb on + strand, within CA264_10130at 2349.916 kb on - strand, within CA264_10130at 2349.916 kb on - strand, within CA264_10130at 2349.916 kb on - strand, within CA264_10130at 2349.934 kb on + strand, within CA264_10130at 2349.944 kb on - strand, within CA264_10130at 2349.944 kb on - strand, within CA264_10130at 2349.988 kb on + strand, within CA264_10130at 2349.989 kb on - strand, within CA264_10130at 2350.031 kb on + strand, within CA264_10130at 2350.031 kb on + strand, within CA264_10130at 2350.031 kb on + strand, within CA264_10130at 2350.031 kb on + strand, within CA264_10130at 2350.032 kb on - strand, within CA264_10130at 2350.032 kb on - strand, within CA264_10130at 2350.033 kb on + strand, within CA264_10130at 2350.034 kb on - strand, within CA264_10130at 2350.111 kb on + strand, within CA264_10130at 2350.113 kb on + strand, within CA264_10130at 2350.166 kb on + strand, within CA264_10130

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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2,347,331 - CA264_10120 0.33 -0.8
2,347,407 + CA264_10120 0.43 -1.1
2,347,407 + CA264_10120 0.43 +0.4
2,347,561 + CA264_10120 0.65 -0.0
2,347,710 - CA264_10120 0.85 -0.8
2,347,710 - CA264_10120 0.85 +1.3
2,347,710 - CA264_10120 0.85 +0.1
2,347,710 - CA264_10120 0.85 +0.2
2,347,759 + +1.0
2,347,760 - -1.8
2,347,760 - -0.2
2,347,772 + +0.0
2,347,772 + -0.9
2,347,805 + +0.1
2,347,805 + -0.4
2,347,806 - -0.6
2,347,808 + -0.6
2,347,808 + -0.6
2,347,809 - +1.0
2,347,815 - -0.1
2,347,815 - +0.5
2,347,825 + +4.3
2,347,825 + +0.0
2,347,909 + +0.4
2,347,909 + -0.5
2,347,935 + -0.2
2,347,967 + -0.1
2,347,976 + -0.7
2,347,977 - -2.1
2,348,028 - -0.1
2,348,207 - +0.2
2,348,240 + +0.6
2,348,241 - +0.2
2,348,241 - +1.0
2,348,241 - -1.2
2,348,241 - +0.7
2,348,241 - -0.0
2,348,241 - -0.4
2,348,284 - -0.4
2,348,312 + -0.8
2,348,313 - +1.8
2,348,369 - -0.2
2,348,414 + CA264_10125 0.10 -0.3
2,348,414 + CA264_10125 0.10 -0.9
2,348,415 - CA264_10125 0.10 +0.7
2,348,452 + CA264_10125 0.15 +0.5
2,348,452 + CA264_10125 0.15 +0.1
2,348,452 + CA264_10125 0.15 -0.2
2,348,453 - CA264_10125 0.15 -0.3
2,348,502 + CA264_10125 0.20 +0.3
2,348,503 - CA264_10125 0.20 -1.4
2,348,542 + CA264_10125 0.25 +0.2
2,348,581 + CA264_10125 0.30 -0.4
2,348,581 + CA264_10125 0.30 +0.2
2,348,602 + CA264_10125 0.32 +0.4
2,348,602 + CA264_10125 0.32 +0.5
2,348,602 + CA264_10125 0.32 +0.6
2,348,602 + CA264_10125 0.32 +0.0
2,348,708 - CA264_10125 0.44 -0.1
2,348,776 + CA264_10125 0.52 +1.4
2,348,817 - CA264_10125 0.57 -0.6
2,348,843 + CA264_10125 0.60 +1.4
2,348,884 + CA264_10125 0.65 +1.0
2,348,884 + CA264_10125 0.65 +2.0
2,348,885 - CA264_10125 0.65 -0.2
2,348,998 + CA264_10125 0.78 -0.2
2,349,119 + -0.9
2,349,142 - +0.2
2,349,146 + -0.2
2,349,146 + -0.8
2,349,147 - -0.2
2,349,147 - +0.4
2,349,147 - -0.3
2,349,182 + -0.8
2,349,182 + +0.1
2,349,183 - -0.1
2,349,183 - -0.6
2,349,183 - -0.2
2,349,183 - +0.3
2,349,183 - -0.2
2,349,186 + -0.0
2,349,187 - +1.1
2,349,187 - -0.4
2,349,187 - +0.1
2,349,187 - -0.2
2,349,201 - +0.7
2,349,201 - -0.2
2,349,226 + -0.1
2,349,227 - -0.0
2,349,286 + -0.3
2,349,286 + +0.3
2,349,296 - +0.8
2,349,300 + +0.9
2,349,300 + +0.3
2,349,300 + -0.4
2,349,318 - +0.2
2,349,388 - +0.1
2,349,397 + -0.6
2,349,398 - +0.5
2,349,398 - -1.0
2,349,422 + -0.4
2,349,484 + +0.1
2,349,485 - +0.5
2,349,485 - +0.0
2,349,485 - -1.8
2,349,594 - -0.0
2,349,618 + +0.6
2,349,619 - +0.2
2,349,647 + +0.0
2,349,680 - -0.0
2,349,683 + +0.0
2,349,685 + -0.1
2,349,685 + -0.0
2,349,685 + -0.9
2,349,760 + CA264_10130 0.11 -0.1
2,349,915 + CA264_10130 0.17 -1.1
2,349,916 - CA264_10130 0.17 +1.0
2,349,916 - CA264_10130 0.17 -0.9
2,349,916 - CA264_10130 0.17 -1.5
2,349,934 + CA264_10130 0.18 +1.3
2,349,944 - CA264_10130 0.18 +0.8
2,349,944 - CA264_10130 0.18 -0.9
2,349,988 + CA264_10130 0.20 -0.1
2,349,989 - CA264_10130 0.20 +0.9
2,350,031 + CA264_10130 0.22 -0.1
2,350,031 + CA264_10130 0.22 -0.8
2,350,031 + CA264_10130 0.22 +0.5
2,350,031 + CA264_10130 0.22 +0.7
2,350,032 - CA264_10130 0.22 -0.3
2,350,032 - CA264_10130 0.22 -1.5
2,350,033 + CA264_10130 0.22 +0.7
2,350,034 - CA264_10130 0.22 -0.7
2,350,111 + CA264_10130 0.25 +0.1
2,350,113 + CA264_10130 0.25 -0.2
2,350,166 + CA264_10130 0.27 -0.4

Or see this region's nucleotide sequence