Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09350

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09345 and CA264_09350 are separated by 193 nucleotidesCA264_09350 and CA264_09355 are separated by 351 nucleotides CA264_09345: CA264_09345 - 4-hydroxyphenylpyruvate dioxygenase, at 2,183,679 to 2,184,773 _09345 CA264_09350: CA264_09350 - phosphoglucomutase, at 2,184,967 to 2,186,700 _09350 CA264_09355: CA264_09355 - nitroreductase, at 2,187,052 to 2,187,639 _09355 Position (kb) 2184 2185 2186 2187Strain fitness (log2 ratio) -2 -1 0 1 2at 2184.022 kb on + strand, within CA264_09345at 2184.083 kb on + strand, within CA264_09345at 2184.134 kb on - strand, within CA264_09345at 2184.178 kb on - strand, within CA264_09345at 2184.178 kb on - strand, within CA264_09345at 2184.178 kb on - strand, within CA264_09345at 2184.202 kb on + strand, within CA264_09345at 2184.238 kb on - strand, within CA264_09345at 2184.343 kb on - strand, within CA264_09345at 2184.347 kb on + strand, within CA264_09345at 2184.402 kb on + strand, within CA264_09345at 2184.472 kb on + strand, within CA264_09345at 2184.507 kb on + strand, within CA264_09345at 2184.507 kb on + strand, within CA264_09345at 2184.522 kb on + strand, within CA264_09345at 2184.523 kb on - strand, within CA264_09345at 2184.523 kb on - strand, within CA264_09345at 2184.525 kb on + strand, within CA264_09345at 2184.525 kb on + strand, within CA264_09345at 2184.526 kb on - strand, within CA264_09345at 2184.526 kb on - strand, within CA264_09345at 2184.526 kb on - strand, within CA264_09345at 2184.578 kb on + strandat 2184.579 kb on - strand, within CA264_09345at 2184.579 kb on - strand, within CA264_09345at 2184.618 kb on + strand, within CA264_09345at 2184.669 kb on + strandat 2184.720 kb on - strandat 2184.771 kb on + strandat 2184.772 kb on - strandat 2184.800 kb on - strandat 2184.828 kb on + strandat 2184.829 kb on - strandat 2184.830 kb on + strandat 2184.830 kb on + strandat 2184.830 kb on + strandat 2184.830 kb on + strandat 2184.830 kb on + strandat 2184.830 kb on + strandat 2184.830 kb on + strandat 2184.831 kb on - strandat 2184.834 kb on + strandat 2184.834 kb on + strandat 2184.836 kb on + strandat 2184.945 kb on - strandat 2184.967 kb on - strandat 2186.698 kb on + strandat 2186.699 kb on - strandat 2186.709 kb on - strandat 2186.838 kb on + strandat 2186.995 kb on - strandat 2186.995 kb on - strandat 2187.000 kb on + strandat 2187.072 kb on + strandat 2187.074 kb on + strandat 2187.086 kb on + strandat 2187.086 kb on + strandat 2187.213 kb on + strand, within CA264_09355at 2187.218 kb on + strand, within CA264_09355at 2187.221 kb on - strand, within CA264_09355at 2187.266 kb on + strand, within CA264_09355at 2187.291 kb on + strand, within CA264_09355at 2187.472 kb on + strand, within CA264_09355at 2187.473 kb on - strand, within CA264_09355at 2187.528 kb on - strand, within CA264_09355at 2187.604 kb on - strandat 2187.657 kb on + strandat 2187.658 kb on - strandat 2187.658 kb on - strandat 2187.658 kb on - strandat 2187.658 kb on - strandat 2187.660 kb on + strandat 2187.663 kb on - strandat 2187.677 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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2,184,022 + CA264_09345 0.31 -0.1
2,184,083 + CA264_09345 0.37 -0.1
2,184,134 - CA264_09345 0.42 -0.1
2,184,178 - CA264_09345 0.46 +0.2
2,184,178 - CA264_09345 0.46 -0.5
2,184,178 - CA264_09345 0.46 -0.6
2,184,202 + CA264_09345 0.48 -0.6
2,184,238 - CA264_09345 0.51 +0.3
2,184,343 - CA264_09345 0.61 -1.5
2,184,347 + CA264_09345 0.61 +0.4
2,184,402 + CA264_09345 0.66 -0.8
2,184,472 + CA264_09345 0.72 -0.7
2,184,507 + CA264_09345 0.76 +1.8
2,184,507 + CA264_09345 0.76 +0.1
2,184,522 + CA264_09345 0.77 -0.3
2,184,523 - CA264_09345 0.77 -1.0
2,184,523 - CA264_09345 0.77 -0.2
2,184,525 + CA264_09345 0.77 +0.3
2,184,525 + CA264_09345 0.77 -0.2
2,184,526 - CA264_09345 0.77 -0.1
2,184,526 - CA264_09345 0.77 -0.3
2,184,526 - CA264_09345 0.77 -0.5
2,184,578 + +1.7
2,184,579 - CA264_09345 0.82 +1.3
2,184,579 - CA264_09345 0.82 -0.6
2,184,618 + CA264_09345 0.86 +0.2
2,184,669 + -0.5
2,184,720 - -0.5
2,184,771 + +0.8
2,184,772 - -1.4
2,184,800 - -0.5
2,184,828 + -0.4
2,184,829 - +0.3
2,184,830 + -1.2
2,184,830 + +1.1
2,184,830 + +0.6
2,184,830 + -0.4
2,184,830 + +0.2
2,184,830 + +0.2
2,184,830 + -1.5
2,184,831 - -0.6
2,184,834 + -0.8
2,184,834 + +0.7
2,184,836 + -0.6
2,184,945 - +0.9
2,184,967 - +0.5
2,186,698 + -1.7
2,186,699 - -1.5
2,186,709 - -0.2
2,186,838 + -0.7
2,186,995 - -0.8
2,186,995 - +0.3
2,187,000 + +0.1
2,187,072 + -1.3
2,187,074 + +0.4
2,187,086 + -0.4
2,187,086 + -0.6
2,187,213 + CA264_09355 0.27 +0.2
2,187,218 + CA264_09355 0.28 -0.2
2,187,221 - CA264_09355 0.29 -1.2
2,187,266 + CA264_09355 0.36 -2.0
2,187,291 + CA264_09355 0.41 -0.1
2,187,472 + CA264_09355 0.71 -0.3
2,187,473 - CA264_09355 0.72 +0.7
2,187,528 - CA264_09355 0.81 -1.3
2,187,604 - -0.4
2,187,657 + -0.8
2,187,658 - -0.1
2,187,658 - +0.0
2,187,658 - -0.7
2,187,658 - +0.1
2,187,660 + -0.7
2,187,663 - -0.2
2,187,677 - +0.4

Or see this region's nucleotide sequence