Experiment: m.b. Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_08715 and CA264_08720 are separated by 145 nucleotides CA264_08720 and CA264_08725 overlap by 8 nucleotides
CA264_08715: CA264_08715 - glucosamine-6-phosphate deaminase, at 2,026,152 to 2,028,116
_08715
CA264_08720: CA264_08720 - RND transporter, at 2,028,262 to 2,029,695
_08720
CA264_08725: CA264_08725 - hydrophobe/amphiphile efflux-1 family RND transporter, at 2,029,688 to 2,032,855
_08725
Position (kb)
2028
2029
2030 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2027.273 kb on + strand, within CA264_08715 at 2027.321 kb on + strand, within CA264_08715 at 2027.321 kb on + strand, within CA264_08715 at 2027.322 kb on - strand, within CA264_08715 at 2027.439 kb on - strand, within CA264_08715 at 2027.711 kb on - strand, within CA264_08715 at 2027.711 kb on - strand, within CA264_08715 at 2027.786 kb on + strand, within CA264_08715 at 2027.786 kb on + strand, within CA264_08715 at 2027.787 kb on - strand, within CA264_08715 at 2027.787 kb on - strand, within CA264_08715 at 2027.798 kb on - strand, within CA264_08715 at 2027.860 kb on - strand, within CA264_08715 at 2027.949 kb on - strand at 2028.141 kb on + strand at 2028.141 kb on + strand at 2028.142 kb on - strand at 2028.142 kb on - strand at 2028.142 kb on - strand at 2028.210 kb on - strand at 2028.220 kb on - strand at 2028.252 kb on + strand at 2028.253 kb on - strand at 2028.253 kb on - strand at 2028.264 kb on - strand at 2028.295 kb on - strand at 2028.386 kb on + strand at 2028.386 kb on + strand at 2028.521 kb on + strand, within CA264_08720 at 2028.551 kb on + strand, within CA264_08720 at 2028.671 kb on - strand, within CA264_08720 at 2028.677 kb on + strand, within CA264_08720 at 2028.677 kb on + strand at 2028.678 kb on - strand, within CA264_08720 at 2028.755 kb on - strand, within CA264_08720 at 2028.832 kb on - strand, within CA264_08720 at 2028.832 kb on - strand, within CA264_08720 at 2028.842 kb on - strand, within CA264_08720 at 2028.952 kb on + strand, within CA264_08720 at 2028.952 kb on + strand, within CA264_08720 at 2028.952 kb on + strand, within CA264_08720 at 2028.953 kb on - strand, within CA264_08720 at 2028.959 kb on + strand, within CA264_08720 at 2028.960 kb on - strand, within CA264_08720 at 2029.046 kb on - strand, within CA264_08720 at 2029.125 kb on - strand, within CA264_08720 at 2029.128 kb on - strand, within CA264_08720 at 2029.128 kb on - strand, within CA264_08720 at 2029.194 kb on - strand, within CA264_08720 at 2029.259 kb on + strand, within CA264_08720 at 2029.260 kb on - strand, within CA264_08720 at 2029.260 kb on - strand, within CA264_08720 at 2029.312 kb on + strand, within CA264_08720 at 2029.313 kb on - strand, within CA264_08720 at 2029.339 kb on + strand, within CA264_08720 at 2029.403 kb on + strand, within CA264_08720 at 2029.404 kb on - strand, within CA264_08720 at 2029.423 kb on + strand, within CA264_08720 at 2029.495 kb on + strand, within CA264_08720 at 2029.495 kb on + strand, within CA264_08720 at 2029.496 kb on - strand, within CA264_08720 at 2029.527 kb on - strand, within CA264_08720 at 2029.589 kb on - strand at 2029.589 kb on - strand at 2029.589 kb on - strand at 2029.674 kb on + strand at 2029.674 kb on + strand at 2029.674 kb on + strand at 2029.675 kb on - strand at 2029.675 kb on - strand at 2029.675 kb on - strand at 2029.676 kb on + strand at 2029.679 kb on - strand at 2029.679 kb on - strand at 2029.689 kb on + strand at 2029.707 kb on + strand at 2029.707 kb on + strand at 2029.708 kb on - strand at 2029.708 kb on - strand at 2029.775 kb on + strand at 2029.775 kb on + strand at 2029.779 kb on + strand at 2029.780 kb on - strand at 2029.782 kb on + strand at 2029.867 kb on + strand at 2029.979 kb on + strand at 2029.979 kb on + strand at 2029.980 kb on - strand at 2030.018 kb on + strand, within CA264_08725 at 2030.019 kb on - strand, within CA264_08725 at 2030.019 kb on - strand, within CA264_08725 at 2030.080 kb on - strand, within CA264_08725 at 2030.080 kb on - strand, within CA264_08725 at 2030.170 kb on + strand, within CA264_08725 at 2030.170 kb on + strand, within CA264_08725 at 2030.232 kb on + strand, within CA264_08725 at 2030.266 kb on - strand, within CA264_08725 at 2030.266 kb on - strand, within CA264_08725 at 2030.353 kb on + strand, within CA264_08725 at 2030.354 kb on - strand, within CA264_08725 at 2030.355 kb on + strand, within CA264_08725 at 2030.355 kb on + strand, within CA264_08725 at 2030.355 kb on + strand, within CA264_08725 at 2030.378 kb on + strand, within CA264_08725 at 2030.380 kb on + strand, within CA264_08725 at 2030.394 kb on + strand, within CA264_08725 at 2030.394 kb on + strand, within CA264_08725 at 2030.395 kb on - strand, within CA264_08725 at 2030.457 kb on + strand, within CA264_08725 at 2030.491 kb on - strand, within CA264_08725 at 2030.499 kb on - strand, within CA264_08725 at 2030.499 kb on - strand, within CA264_08725 at 2030.500 kb on - strand, within CA264_08725 at 2030.528 kb on - strand, within CA264_08725 at 2030.544 kb on + strand, within CA264_08725 at 2030.544 kb on + strand, within CA264_08725 at 2030.547 kb on - strand, within CA264_08725 at 2030.547 kb on - strand, within CA264_08725 at 2030.586 kb on + strand, within CA264_08725 at 2030.586 kb on + strand, within CA264_08725 at 2030.587 kb on - strand, within CA264_08725 at 2030.594 kb on - strand, within CA264_08725 at 2030.594 kb on - strand, within CA264_08725 at 2030.666 kb on + strand, within CA264_08725
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM remove 2,027,273 + CA264_08715 0.57 -0.9 2,027,321 + CA264_08715 0.59 -0.7 2,027,321 + CA264_08715 0.59 -2.2 2,027,322 - CA264_08715 0.60 -0.6 2,027,439 - CA264_08715 0.65 -1.6 2,027,711 - CA264_08715 0.79 -1.2 2,027,711 - CA264_08715 0.79 -1.9 2,027,786 + CA264_08715 0.83 -1.9 2,027,786 + CA264_08715 0.83 -4.3 2,027,787 - CA264_08715 0.83 -1.4 2,027,787 - CA264_08715 0.83 -0.5 2,027,798 - CA264_08715 0.84 -0.5 2,027,860 - CA264_08715 0.87 +0.6 2,027,949 - -0.9 2,028,141 + +0.2 2,028,141 + +0.3 2,028,142 - +0.9 2,028,142 - -0.3 2,028,142 - -0.3 2,028,210 - -0.7 2,028,220 - -0.1 2,028,252 + -0.1 2,028,253 - -0.3 2,028,253 - +0.4 2,028,264 - +0.7 2,028,295 - -0.4 2,028,386 + +0.4 2,028,386 + +0.4 2,028,521 + CA264_08720 0.18 -0.1 2,028,551 + CA264_08720 0.20 -0.1 2,028,671 - CA264_08720 0.29 -0.6 2,028,677 + CA264_08720 0.29 +1.3 2,028,677 + +2.3 2,028,678 - CA264_08720 0.29 -0.6 2,028,755 - CA264_08720 0.34 +0.4 2,028,832 - CA264_08720 0.40 -0.0 2,028,832 - CA264_08720 0.40 +0.4 2,028,842 - CA264_08720 0.40 -0.0 2,028,952 + CA264_08720 0.48 +0.6 2,028,952 + CA264_08720 0.48 -0.5 2,028,952 + CA264_08720 0.48 +2.3 2,028,953 - CA264_08720 0.48 +0.2 2,028,959 + CA264_08720 0.49 -0.3 2,028,960 - CA264_08720 0.49 -0.2 2,029,046 - CA264_08720 0.55 -0.5 2,029,125 - CA264_08720 0.60 +0.0 2,029,128 - CA264_08720 0.60 -0.0 2,029,128 - CA264_08720 0.60 -0.4 2,029,194 - CA264_08720 0.65 +0.0 2,029,259 + CA264_08720 0.70 +0.2 2,029,260 - CA264_08720 0.70 +0.4 2,029,260 - CA264_08720 0.70 -1.3 2,029,312 + CA264_08720 0.73 -0.2 2,029,313 - CA264_08720 0.73 +0.1 2,029,339 + CA264_08720 0.75 +0.1 2,029,403 + CA264_08720 0.80 +0.1 2,029,404 - CA264_08720 0.80 -0.5 2,029,423 + CA264_08720 0.81 +0.8 2,029,495 + CA264_08720 0.86 +0.6 2,029,495 + CA264_08720 0.86 -0.0 2,029,496 - CA264_08720 0.86 +1.5 2,029,527 - CA264_08720 0.88 -0.1 2,029,589 - -0.6 2,029,589 - +0.6 2,029,589 - -0.7 2,029,674 + -0.6 2,029,674 + -0.5 2,029,674 + +0.3 2,029,675 - +0.3 2,029,675 - +0.4 2,029,675 - -0.7 2,029,676 + +0.9 2,029,679 - +0.6 2,029,679 - -0.2 2,029,689 + +0.1 2,029,707 + -0.4 2,029,707 + +1.3 2,029,708 - -0.8 2,029,708 - -1.0 2,029,775 + -0.5 2,029,775 + -0.9 2,029,779 + +0.7 2,029,780 - -0.3 2,029,782 + +0.2 2,029,867 + +0.6 2,029,979 + -0.1 2,029,979 + -0.2 2,029,980 - -0.1 2,030,018 + CA264_08725 0.10 +0.6 2,030,019 - CA264_08725 0.10 -0.5 2,030,019 - CA264_08725 0.10 -0.7 2,030,080 - CA264_08725 0.12 +0.2 2,030,080 - CA264_08725 0.12 +1.0 2,030,170 + CA264_08725 0.15 -0.1 2,030,170 + CA264_08725 0.15 -0.4 2,030,232 + CA264_08725 0.17 -0.2 2,030,266 - CA264_08725 0.18 -0.8 2,030,266 - CA264_08725 0.18 -0.0 2,030,353 + CA264_08725 0.21 -0.2 2,030,354 - CA264_08725 0.21 +0.3 2,030,355 + CA264_08725 0.21 -0.8 2,030,355 + CA264_08725 0.21 +0.1 2,030,355 + CA264_08725 0.21 -1.2 2,030,378 + CA264_08725 0.22 -0.2 2,030,380 + CA264_08725 0.22 -0.4 2,030,394 + CA264_08725 0.22 -1.3 2,030,394 + CA264_08725 0.22 +0.4 2,030,395 - CA264_08725 0.22 +0.7 2,030,457 + CA264_08725 0.24 -2.1 2,030,491 - CA264_08725 0.25 -0.3 2,030,499 - CA264_08725 0.26 +0.4 2,030,499 - CA264_08725 0.26 +0.6 2,030,500 - CA264_08725 0.26 +0.6 2,030,528 - CA264_08725 0.27 -0.3 2,030,544 + CA264_08725 0.27 -0.4 2,030,544 + CA264_08725 0.27 -0.7 2,030,547 - CA264_08725 0.27 +1.0 2,030,547 - CA264_08725 0.27 +0.4 2,030,586 + CA264_08725 0.28 +0.2 2,030,586 + CA264_08725 0.28 +0.7 2,030,587 - CA264_08725 0.28 -1.0 2,030,594 - CA264_08725 0.29 +0.2 2,030,594 - CA264_08725 0.29 +0.8 2,030,666 + CA264_08725 0.31 +0.5
Or see this region's nucleotide sequence