Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05750

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_05745 and CA264_05750 are separated by 289 nucleotidesCA264_05750 and CA264_05755 are separated by 88 nucleotidesCA264_05755 and CA264_05760 are separated by 7 nucleotides CA264_05745: CA264_05745 - hypothetical protein, at 1,337,552 to 1,338,904 _05745 CA264_05750: CA264_05750 - universal stress protein, at 1,339,194 to 1,340,114 _05750 CA264_05755: CA264_05755 - hypothetical protein, at 1,340,203 to 1,340,919 _05755 CA264_05760: CA264_05760 - nitrogen fixation protein FixH, at 1,340,927 to 1,341,391 _05760 Position (kb) 1339 1340 1341Strain fitness (log2 ratio) -2 -1 0 1at 1338.198 kb on + strand, within CA264_05745at 1338.361 kb on - strand, within CA264_05745at 1338.473 kb on - strand, within CA264_05745at 1338.473 kb on - strand, within CA264_05745at 1338.496 kb on - strand, within CA264_05745at 1338.496 kb on - strand, within CA264_05745at 1338.496 kb on - strand, within CA264_05745at 1338.498 kb on + strand, within CA264_05745at 1338.499 kb on - strand, within CA264_05745at 1338.613 kb on + strand, within CA264_05745at 1338.613 kb on + strand, within CA264_05745at 1338.679 kb on + strand, within CA264_05745at 1338.752 kb on - strand, within CA264_05745at 1338.790 kb on - strandat 1338.893 kb on + strandat 1338.904 kb on + strandat 1338.904 kb on + strandat 1338.907 kb on + strandat 1338.908 kb on - strandat 1338.954 kb on + strandat 1338.954 kb on + strandat 1338.959 kb on - strandat 1339.113 kb on + strandat 1339.196 kb on - strandat 1339.196 kb on - strandat 1339.206 kb on - strandat 1339.265 kb on + strandat 1339.330 kb on + strand, within CA264_05750at 1339.331 kb on - strand, within CA264_05750at 1339.349 kb on - strand, within CA264_05750at 1339.400 kb on + strand, within CA264_05750at 1339.401 kb on - strand, within CA264_05750at 1339.401 kb on - strand, within CA264_05750at 1339.578 kb on + strand, within CA264_05750at 1339.810 kb on + strand, within CA264_05750at 1339.941 kb on + strand, within CA264_05750at 1339.961 kb on + strand, within CA264_05750at 1339.963 kb on + strand, within CA264_05750at 1339.964 kb on - strandat 1340.039 kb on - strandat 1340.043 kb on + strandat 1340.058 kb on + strandat 1340.098 kb on + strandat 1340.099 kb on - strandat 1340.101 kb on - strandat 1340.115 kb on - strandat 1340.120 kb on + strandat 1340.121 kb on - strandat 1340.302 kb on - strand, within CA264_05755at 1340.329 kb on + strand, within CA264_05755at 1340.329 kb on + strand, within CA264_05755at 1340.329 kb on + strand, within CA264_05755at 1340.330 kb on - strand, within CA264_05755at 1340.330 kb on - strand, within CA264_05755at 1340.330 kb on - strand, within CA264_05755at 1340.330 kb on - strand, within CA264_05755at 1340.330 kb on - strand, within CA264_05755at 1340.330 kb on - strand, within CA264_05755at 1340.334 kb on - strand, within CA264_05755at 1340.334 kb on - strand, within CA264_05755at 1340.441 kb on + strand, within CA264_05755at 1340.442 kb on - strand, within CA264_05755at 1340.665 kb on + strand, within CA264_05755at 1340.666 kb on - strand, within CA264_05755at 1340.673 kb on + strand, within CA264_05755at 1340.763 kb on + strand, within CA264_05755at 1340.766 kb on - strand, within CA264_05755at 1340.766 kb on - strand, within CA264_05755at 1340.766 kb on - strand, within CA264_05755at 1340.790 kb on - strand, within CA264_05755at 1340.811 kb on - strand, within CA264_05755at 1340.811 kb on - strand, within CA264_05755at 1340.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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1,338,198 + CA264_05745 0.48 +0.0
1,338,361 - CA264_05745 0.60 -0.2
1,338,473 - CA264_05745 0.68 +0.6
1,338,473 - CA264_05745 0.68 -0.6
1,338,496 - CA264_05745 0.70 -0.7
1,338,496 - CA264_05745 0.70 +0.3
1,338,496 - CA264_05745 0.70 +1.1
1,338,498 + CA264_05745 0.70 -0.0
1,338,499 - CA264_05745 0.70 -0.3
1,338,613 + CA264_05745 0.78 -0.3
1,338,613 + CA264_05745 0.78 -1.5
1,338,679 + CA264_05745 0.83 +0.6
1,338,752 - CA264_05745 0.89 +0.1
1,338,790 - -0.1
1,338,893 + -0.1
1,338,904 + -1.3
1,338,904 + -0.7
1,338,907 + -0.2
1,338,908 - -0.6
1,338,954 + -0.4
1,338,954 + +0.4
1,338,959 - -0.6
1,339,113 + -0.3
1,339,196 - +0.4
1,339,196 - -0.6
1,339,206 - -0.2
1,339,265 + +0.0
1,339,330 + CA264_05750 0.15 +0.1
1,339,331 - CA264_05750 0.15 -0.4
1,339,349 - CA264_05750 0.17 -0.0
1,339,400 + CA264_05750 0.22 -0.8
1,339,401 - CA264_05750 0.22 -0.3
1,339,401 - CA264_05750 0.22 -1.1
1,339,578 + CA264_05750 0.42 -1.9
1,339,810 + CA264_05750 0.67 -0.4
1,339,941 + CA264_05750 0.81 -1.2
1,339,961 + CA264_05750 0.83 +1.3
1,339,963 + CA264_05750 0.83 -0.1
1,339,964 - +0.3
1,340,039 - -0.0
1,340,043 + -0.6
1,340,058 + -0.5
1,340,098 + -1.0
1,340,099 - -0.1
1,340,101 - +0.6
1,340,115 - -0.5
1,340,120 + +0.1
1,340,121 - +1.7
1,340,302 - CA264_05755 0.14 -0.4
1,340,329 + CA264_05755 0.18 -0.2
1,340,329 + CA264_05755 0.18 -0.9
1,340,329 + CA264_05755 0.18 -0.7
1,340,330 - CA264_05755 0.18 +0.0
1,340,330 - CA264_05755 0.18 -0.1
1,340,330 - CA264_05755 0.18 +0.3
1,340,330 - CA264_05755 0.18 -0.9
1,340,330 - CA264_05755 0.18 -0.5
1,340,330 - CA264_05755 0.18 -0.2
1,340,334 - CA264_05755 0.18 -0.9
1,340,334 - CA264_05755 0.18 -1.1
1,340,441 + CA264_05755 0.33 -0.1
1,340,442 - CA264_05755 0.33 -1.0
1,340,665 + CA264_05755 0.64 -1.2
1,340,666 - CA264_05755 0.65 -0.2
1,340,673 + CA264_05755 0.66 +0.3
1,340,763 + CA264_05755 0.78 -1.6
1,340,766 - CA264_05755 0.79 -0.3
1,340,766 - CA264_05755 0.79 -2.0
1,340,766 - CA264_05755 0.79 +0.3
1,340,790 - CA264_05755 0.82 +0.6
1,340,811 - CA264_05755 0.85 -0.6
1,340,811 - CA264_05755 0.85 -0.1
1,340,934 - -0.1

Or see this region's nucleotide sequence