Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_05125

Experiment: m.b. Chlorite 0.08 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_05120 and CA264_05125 are separated by 322 nucleotidesCA264_05125 and CA264_05130 are separated by 26 nucleotides CA264_05120: CA264_05120 - alpha/beta hydrolase, at 1,183,670 to 1,184,536 _05120 CA264_05125: CA264_05125 - hypothetical protein, at 1,184,859 to 1,186,397 _05125 CA264_05130: CA264_05130 - alanine racemase, at 1,186,424 to 1,187,575 _05130 Position (kb) 1184 1185 1186 1187Strain fitness (log2 ratio) -2 -1 0 1 2at 1183.890 kb on + strand, within CA264_05120at 1183.915 kb on + strand, within CA264_05120at 1183.916 kb on - strand, within CA264_05120at 1184.010 kb on + strand, within CA264_05120at 1184.029 kb on + strand, within CA264_05120at 1184.029 kb on + strand, within CA264_05120at 1184.029 kb on + strand, within CA264_05120at 1184.030 kb on - strand, within CA264_05120at 1184.030 kb on - strand, within CA264_05120at 1184.030 kb on - strand, within CA264_05120at 1184.030 kb on - strand, within CA264_05120at 1184.030 kb on - strand, within CA264_05120at 1184.030 kb on - strand, within CA264_05120at 1184.084 kb on - strand, within CA264_05120at 1184.142 kb on - strand, within CA264_05120at 1184.144 kb on + strand, within CA264_05120at 1184.144 kb on + strand, within CA264_05120at 1184.146 kb on + strand, within CA264_05120at 1184.216 kb on + strand, within CA264_05120at 1184.216 kb on + strand, within CA264_05120at 1184.217 kb on - strand, within CA264_05120at 1184.228 kb on + strand, within CA264_05120at 1184.230 kb on + strand, within CA264_05120at 1184.305 kb on + strand, within CA264_05120at 1184.423 kb on + strand, within CA264_05120at 1184.423 kb on + strand, within CA264_05120at 1184.441 kb on - strand, within CA264_05120at 1184.450 kb on + strandat 1184.451 kb on - strandat 1184.454 kb on + strandat 1184.561 kb on - strandat 1184.628 kb on + strandat 1184.633 kb on - strandat 1184.633 kb on - strandat 1184.636 kb on + strandat 1184.636 kb on + strandat 1184.666 kb on + strandat 1184.666 kb on + strandat 1184.709 kb on + strandat 1184.710 kb on - strandat 1184.712 kb on - strandat 1184.738 kb on + strandat 1184.742 kb on - strandat 1185.087 kb on - strand, within CA264_05125at 1185.167 kb on + strand, within CA264_05125at 1185.230 kb on - strand, within CA264_05125at 1185.230 kb on - strand, within CA264_05125at 1185.306 kb on - strand, within CA264_05125at 1185.310 kb on + strand, within CA264_05125at 1185.311 kb on - strand, within CA264_05125at 1185.318 kb on - strand, within CA264_05125at 1185.319 kb on + strand, within CA264_05125at 1185.319 kb on + strand, within CA264_05125at 1185.360 kb on + strand, within CA264_05125at 1185.360 kb on + strand, within CA264_05125at 1185.360 kb on + strand, within CA264_05125at 1185.361 kb on - strand, within CA264_05125at 1185.361 kb on - strand, within CA264_05125at 1185.361 kb on - strand, within CA264_05125at 1185.363 kb on + strand, within CA264_05125at 1185.363 kb on + strand, within CA264_05125at 1185.364 kb on - strand, within CA264_05125at 1185.424 kb on - strand, within CA264_05125at 1185.431 kb on + strand, within CA264_05125at 1185.590 kb on - strand, within CA264_05125at 1185.621 kb on + strand, within CA264_05125at 1185.622 kb on - strand, within CA264_05125at 1185.622 kb on - strand, within CA264_05125at 1185.622 kb on - strand, within CA264_05125at 1185.622 kb on - strand, within CA264_05125at 1185.625 kb on + strand, within CA264_05125at 1185.625 kb on + strand, within CA264_05125at 1185.626 kb on + strand, within CA264_05125at 1185.755 kb on + strand, within CA264_05125at 1185.778 kb on - strand, within CA264_05125at 1185.889 kb on + strand, within CA264_05125at 1185.890 kb on - strand, within CA264_05125at 1186.039 kb on + strand, within CA264_05125at 1186.078 kb on - strand, within CA264_05125at 1186.146 kb on + strand, within CA264_05125at 1186.147 kb on - strand, within CA264_05125at 1186.242 kb on - strand, within CA264_05125at 1186.254 kb on - strandat 1186.395 kb on + strandat 1186.416 kb on + strandat 1186.416 kb on + strandat 1186.416 kb on + strandat 1186.417 kb on - strandat 1186.425 kb on + strandat 1186.425 kb on + strandat 1186.426 kb on - strandat 1186.437 kb on + strandat 1186.438 kb on - strandat 1186.438 kb on - strandat 1186.450 kb on + strandat 1186.470 kb on - strandat 1186.481 kb on + strandat 1186.535 kb on + strandat 1186.535 kb on + strandat 1186.536 kb on - strandat 1186.646 kb on + strand, within CA264_05130at 1186.647 kb on - strand, within CA264_05130at 1186.761 kb on + strand, within CA264_05130at 1186.792 kb on + strand, within CA264_05130at 1186.855 kb on + strand, within CA264_05130at 1186.894 kb on - strand, within CA264_05130at 1186.900 kb on + strand, within CA264_05130at 1186.984 kb on + strand, within CA264_05130at 1187.023 kb on - strand, within CA264_05130at 1187.132 kb on - strand, within CA264_05130at 1187.135 kb on + strand, within CA264_05130at 1187.159 kb on - strand, within CA264_05130at 1187.159 kb on - strand, within CA264_05130at 1187.202 kb on - strand, within CA264_05130at 1187.248 kb on + strand, within CA264_05130at 1187.323 kb on - strand, within CA264_05130at 1187.323 kb on - strand, within CA264_05130at 1187.329 kb on + strand, within CA264_05130

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
remove
1,183,890 + CA264_05120 0.25 -0.0
1,183,915 + CA264_05120 0.28 -0.1
1,183,916 - CA264_05120 0.28 -0.3
1,184,010 + CA264_05120 0.39 -0.4
1,184,029 + CA264_05120 0.41 +0.2
1,184,029 + CA264_05120 0.41 +0.4
1,184,029 + CA264_05120 0.41 -0.0
1,184,030 - CA264_05120 0.42 +0.2
1,184,030 - CA264_05120 0.42 -0.0
1,184,030 - CA264_05120 0.42 -0.4
1,184,030 - CA264_05120 0.42 +0.1
1,184,030 - CA264_05120 0.42 -0.2
1,184,030 - CA264_05120 0.42 +0.3
1,184,084 - CA264_05120 0.48 +0.2
1,184,142 - CA264_05120 0.54 +0.0
1,184,144 + CA264_05120 0.55 +0.7
1,184,144 + CA264_05120 0.55 +1.7
1,184,146 + CA264_05120 0.55 +0.4
1,184,216 + CA264_05120 0.63 -0.1
1,184,216 + CA264_05120 0.63 -0.4
1,184,217 - CA264_05120 0.63 +1.2
1,184,228 + CA264_05120 0.64 +1.0
1,184,230 + CA264_05120 0.65 +1.1
1,184,305 + CA264_05120 0.73 +0.5
1,184,423 + CA264_05120 0.87 +0.4
1,184,423 + CA264_05120 0.87 -0.1
1,184,441 - CA264_05120 0.89 -0.3
1,184,450 + +0.6
1,184,451 - +0.1
1,184,454 + +2.3
1,184,561 - +0.1
1,184,628 + +0.2
1,184,633 - -0.1
1,184,633 - -0.4
1,184,636 + -1.1
1,184,636 + -1.0
1,184,666 + +0.3
1,184,666 + -0.0
1,184,709 + -0.9
1,184,710 - +0.2
1,184,712 - -0.8
1,184,738 + -0.7
1,184,742 - -0.1
1,185,087 - CA264_05125 0.15 -1.4
1,185,167 + CA264_05125 0.20 -0.3
1,185,230 - CA264_05125 0.24 +0.5
1,185,230 - CA264_05125 0.24 -0.7
1,185,306 - CA264_05125 0.29 +0.0
1,185,310 + CA264_05125 0.29 +0.5
1,185,311 - CA264_05125 0.29 -0.4
1,185,318 - CA264_05125 0.30 +1.3
1,185,319 + CA264_05125 0.30 +1.5
1,185,319 + CA264_05125 0.30 +0.7
1,185,360 + CA264_05125 0.33 -0.3
1,185,360 + CA264_05125 0.33 +0.8
1,185,360 + CA264_05125 0.33 +0.5
1,185,361 - CA264_05125 0.33 +0.6
1,185,361 - CA264_05125 0.33 -0.0
1,185,361 - CA264_05125 0.33 +0.1
1,185,363 + CA264_05125 0.33 +0.6
1,185,363 + CA264_05125 0.33 -0.9
1,185,364 - CA264_05125 0.33 -0.1
1,185,424 - CA264_05125 0.37 +1.2
1,185,431 + CA264_05125 0.37 +0.4
1,185,590 - CA264_05125 0.47 -0.2
1,185,621 + CA264_05125 0.50 +0.1
1,185,622 - CA264_05125 0.50 +0.1
1,185,622 - CA264_05125 0.50 -0.4
1,185,622 - CA264_05125 0.50 -0.2
1,185,622 - CA264_05125 0.50 +0.0
1,185,625 + CA264_05125 0.50 +0.4
1,185,625 + CA264_05125 0.50 -0.3
1,185,626 + CA264_05125 0.50 +0.7
1,185,755 + CA264_05125 0.58 -0.6
1,185,778 - CA264_05125 0.60 +0.7
1,185,889 + CA264_05125 0.67 +0.5
1,185,890 - CA264_05125 0.67 -0.2
1,186,039 + CA264_05125 0.77 +0.8
1,186,078 - CA264_05125 0.79 +0.1
1,186,146 + CA264_05125 0.84 +0.2
1,186,147 - CA264_05125 0.84 -1.4
1,186,242 - CA264_05125 0.90 +1.0
1,186,254 - -1.6
1,186,395 + -0.1
1,186,416 + -2.4
1,186,416 + -0.7
1,186,416 + +1.3
1,186,417 - -0.0
1,186,425 + -0.7
1,186,425 + +0.4
1,186,426 - -1.3
1,186,437 + +0.3
1,186,438 - -0.0
1,186,438 - +0.6
1,186,450 + -0.2
1,186,470 - -1.2
1,186,481 + +0.3
1,186,535 + +0.4
1,186,535 + -0.4
1,186,536 - -1.5
1,186,646 + CA264_05130 0.19 -0.4
1,186,647 - CA264_05130 0.19 +0.7
1,186,761 + CA264_05130 0.29 -0.0
1,186,792 + CA264_05130 0.32 -0.3
1,186,855 + CA264_05130 0.37 -1.6
1,186,894 - CA264_05130 0.41 -0.3
1,186,900 + CA264_05130 0.41 -0.3
1,186,984 + CA264_05130 0.49 -0.7
1,187,023 - CA264_05130 0.52 +0.0
1,187,132 - CA264_05130 0.61 -0.0
1,187,135 + CA264_05130 0.62 -0.0
1,187,159 - CA264_05130 0.64 +0.3
1,187,159 - CA264_05130 0.64 -0.2
1,187,202 - CA264_05130 0.68 -0.3
1,187,248 + CA264_05130 0.72 +1.1
1,187,323 - CA264_05130 0.78 +0.0
1,187,323 - CA264_05130 0.78 -1.0
1,187,329 + CA264_05130 0.79 +0.0

Or see this region's nucleotide sequence