Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03085

Experiment: m.b. Chlorite 0.08 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA264_03080 and CA264_03085 are separated by 4 nucleotidesCA264_03085 and CA264_03090 are separated by 348 nucleotides CA264_03080: CA264_03080 - hypothetical protein, at 717,912 to 720,284 _03080 CA264_03085: CA264_03085 - polysaccharide transporter, at 720,289 to 721,053 _03085 CA264_03090: CA264_03090 - hypothetical protein, at 721,402 to 721,617 _03090 Position (kb) 720 721 722Strain fitness (log2 ratio) -2 -1 0 1 2at 719.297 kb on - strand, within CA264_03080at 719.410 kb on - strand, within CA264_03080at 719.468 kb on - strand, within CA264_03080at 719.468 kb on - strand, within CA264_03080at 719.556 kb on + strand, within CA264_03080at 719.556 kb on + strand, within CA264_03080at 719.558 kb on + strand, within CA264_03080at 719.558 kb on + strand, within CA264_03080at 719.559 kb on - strand, within CA264_03080at 719.559 kb on - strand, within CA264_03080at 719.559 kb on - strand, within CA264_03080at 719.559 kb on - strand, within CA264_03080at 719.593 kb on - strand, within CA264_03080at 719.626 kb on + strand, within CA264_03080at 719.626 kb on + strand, within CA264_03080at 719.797 kb on - strand, within CA264_03080at 719.809 kb on + strand, within CA264_03080at 719.810 kb on - strand, within CA264_03080at 719.838 kb on - strand, within CA264_03080at 719.887 kb on + strand, within CA264_03080at 719.888 kb on - strand, within CA264_03080at 719.952 kb on + strand, within CA264_03080at 719.952 kb on + strand, within CA264_03080at 719.953 kb on - strand, within CA264_03080at 719.953 kb on - strand, within CA264_03080at 719.959 kb on + strand, within CA264_03080at 719.960 kb on - strand, within CA264_03080at 720.044 kb on + strand, within CA264_03080at 720.045 kb on - strand, within CA264_03080at 720.136 kb on + strandat 720.162 kb on + strandat 720.162 kb on + strandat 720.166 kb on + strandat 720.167 kb on - strandat 720.173 kb on - strandat 720.173 kb on - strandat 720.189 kb on + strandat 720.190 kb on - strandat 720.250 kb on - strandat 720.256 kb on - strandat 720.321 kb on + strandat 720.346 kb on + strandat 720.347 kb on - strandat 720.396 kb on - strand, within CA264_03085at 720.420 kb on - strand, within CA264_03085at 720.422 kb on + strand, within CA264_03085at 720.422 kb on + strand, within CA264_03085at 720.461 kb on - strand, within CA264_03085at 720.480 kb on + strand, within CA264_03085at 720.497 kb on - strand, within CA264_03085at 720.499 kb on + strand, within CA264_03085at 720.499 kb on + strand, within CA264_03085at 720.508 kb on - strand, within CA264_03085at 720.581 kb on + strand, within CA264_03085at 720.585 kb on + strand, within CA264_03085at 720.585 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.587 kb on + strand, within CA264_03085at 720.594 kb on - strand, within CA264_03085at 720.594 kb on - strand, within CA264_03085at 720.607 kb on + strand, within CA264_03085at 720.608 kb on - strand, within CA264_03085at 720.637 kb on - strand, within CA264_03085at 720.637 kb on - strand, within CA264_03085at 720.671 kb on + strand, within CA264_03085at 720.728 kb on - strand, within CA264_03085at 720.728 kb on - strand, within CA264_03085at 720.742 kb on + strand, within CA264_03085at 720.742 kb on + strand, within CA264_03085at 720.743 kb on - strand, within CA264_03085at 720.757 kb on + strand, within CA264_03085at 720.782 kb on + strand, within CA264_03085at 720.832 kb on - strand, within CA264_03085at 720.853 kb on - strand, within CA264_03085at 720.853 kb on - strand, within CA264_03085at 720.862 kb on - strand, within CA264_03085at 720.896 kb on - strand, within CA264_03085at 720.918 kb on - strand, within CA264_03085at 720.918 kb on - strand, within CA264_03085at 720.918 kb on - strand, within CA264_03085at 720.918 kb on - strand, within CA264_03085at 720.953 kb on + strand, within CA264_03085at 720.954 kb on - strand, within CA264_03085at 721.018 kb on + strandat 721.095 kb on + strandat 721.096 kb on - strandat 721.130 kb on - strandat 721.133 kb on + strandat 721.138 kb on - strandat 721.160 kb on + strandat 721.166 kb on + strandat 721.167 kb on - strandat 721.168 kb on + strandat 721.170 kb on + strandat 721.389 kb on + strandat 721.447 kb on - strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.467 kb on + strand, within CA264_03090at 721.486 kb on + strand, within CA264_03090at 721.502 kb on + strand, within CA264_03090at 721.502 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.506 kb on + strand, within CA264_03090at 721.507 kb on - strand, within CA264_03090at 721.507 kb on - strand, within CA264_03090at 721.509 kb on + strand, within CA264_03090at 721.519 kb on + strand, within CA264_03090at 721.519 kb on + strand, within CA264_03090at 721.524 kb on + strand, within CA264_03090at 721.605 kb on + strandat 721.606 kb on - strandat 721.606 kb on - strandat 721.610 kb on + strandat 721.630 kb on + strandat 721.634 kb on + strandat 721.636 kb on + strandat 721.637 kb on - strandat 721.641 kb on - strandat 721.663 kb on - strandat 721.669 kb on + strandat 721.670 kb on - strandat 721.759 kb on + strandat 721.760 kb on - strandat 721.802 kb on + strandat 721.817 kb on + strandat 721.822 kb on + strandat 721.822 kb on + strandat 721.822 kb on + strandat 721.823 kb on - strandat 721.825 kb on + strandat 721.825 kb on + strandat 721.831 kb on + strandat 721.922 kb on + strandat 721.922 kb on + strandat 721.923 kb on - strandat 721.923 kb on - strandat 722.041 kb on - strandat 722.045 kb on + strandat 722.045 kb on + strandat 722.046 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
remove
719,297 - CA264_03080 0.58 +0.2
719,410 - CA264_03080 0.63 +0.1
719,468 - CA264_03080 0.66 -0.9
719,468 - CA264_03080 0.66 +0.6
719,556 + CA264_03080 0.69 -0.2
719,556 + CA264_03080 0.69 -0.3
719,558 + CA264_03080 0.69 -0.8
719,558 + CA264_03080 0.69 +0.3
719,559 - CA264_03080 0.69 -0.5
719,559 - CA264_03080 0.69 -0.6
719,559 - CA264_03080 0.69 +2.0
719,559 - CA264_03080 0.69 +0.5
719,593 - CA264_03080 0.71 +0.2
719,626 + CA264_03080 0.72 +0.3
719,626 + CA264_03080 0.72 -0.3
719,797 - CA264_03080 0.79 -0.3
719,809 + CA264_03080 0.80 -0.4
719,810 - CA264_03080 0.80 -0.1
719,838 - CA264_03080 0.81 +0.1
719,887 + CA264_03080 0.83 +1.0
719,888 - CA264_03080 0.83 -0.6
719,952 + CA264_03080 0.86 -0.1
719,952 + CA264_03080 0.86 -0.9
719,953 - CA264_03080 0.86 -0.3
719,953 - CA264_03080 0.86 -1.2
719,959 + CA264_03080 0.86 -0.7
719,960 - CA264_03080 0.86 +0.5
720,044 + CA264_03080 0.90 +0.7
720,045 - CA264_03080 0.90 -0.0
720,136 + +0.1
720,162 + -0.1
720,162 + -0.4
720,166 + +0.1
720,167 - -0.7
720,173 - -0.5
720,173 - -0.4
720,189 + -0.5
720,190 - -1.2
720,250 - -0.0
720,256 - -1.3
720,321 + -0.4
720,346 + +0.1
720,347 - -0.6
720,396 - CA264_03085 0.14 -0.7
720,420 - CA264_03085 0.17 -1.3
720,422 + CA264_03085 0.17 +0.1
720,422 + CA264_03085 0.17 -2.0
720,461 - CA264_03085 0.22 +0.1
720,480 + CA264_03085 0.25 +0.1
720,497 - CA264_03085 0.27 +0.2
720,499 + CA264_03085 0.27 +0.6
720,499 + CA264_03085 0.27 -0.6
720,508 - CA264_03085 0.29 -1.1
720,581 + CA264_03085 0.38 -1.0
720,585 + CA264_03085 0.39 -0.2
720,585 + CA264_03085 0.39 -0.4
720,587 + CA264_03085 0.39 -0.5
720,587 + CA264_03085 0.39 -1.2
720,587 + CA264_03085 0.39 -0.3
720,587 + CA264_03085 0.39 -0.6
720,587 + CA264_03085 0.39 -1.1
720,587 + CA264_03085 0.39 -0.2
720,594 - CA264_03085 0.40 +0.4
720,594 - CA264_03085 0.40 +0.2
720,607 + CA264_03085 0.42 -0.5
720,608 - CA264_03085 0.42 +1.3
720,637 - CA264_03085 0.45 -0.2
720,637 - CA264_03085 0.45 -0.7
720,671 + CA264_03085 0.50 -0.3
720,728 - CA264_03085 0.57 -0.5
720,728 - CA264_03085 0.57 -0.3
720,742 + CA264_03085 0.59 -1.0
720,742 + CA264_03085 0.59 -0.3
720,743 - CA264_03085 0.59 -0.3
720,757 + CA264_03085 0.61 -0.4
720,782 + CA264_03085 0.64 +0.8
720,832 - CA264_03085 0.71 +0.9
720,853 - CA264_03085 0.74 -0.4
720,853 - CA264_03085 0.74 -1.5
720,862 - CA264_03085 0.75 -0.2
720,896 - CA264_03085 0.79 +0.1
720,918 - CA264_03085 0.82 +0.1
720,918 - CA264_03085 0.82 -0.7
720,918 - CA264_03085 0.82 -0.8
720,918 - CA264_03085 0.82 -0.3
720,953 + CA264_03085 0.87 +0.2
720,954 - CA264_03085 0.87 -0.5
721,018 + -0.5
721,095 + +0.2
721,096 - -0.4
721,130 - +0.0
721,133 + +0.4
721,138 - +0.5
721,160 + +1.3
721,166 + -0.4
721,167 - -0.2
721,168 + -0.5
721,170 + +0.2
721,389 + +0.2
721,447 - CA264_03090 0.21 +0.1
721,467 + CA264_03090 0.30 +0.4
721,467 + CA264_03090 0.30 +1.1
721,467 + CA264_03090 0.30 +0.2
721,467 + CA264_03090 0.30 -0.3
721,467 + CA264_03090 0.30 +0.6
721,486 + CA264_03090 0.39 +0.4
721,502 + CA264_03090 0.46 -0.6
721,502 + CA264_03090 0.46 -1.0
721,506 + CA264_03090 0.48 -0.7
721,506 + CA264_03090 0.48 -2.7
721,506 + CA264_03090 0.48 +0.6
721,506 + CA264_03090 0.48 +0.0
721,507 - CA264_03090 0.49 +0.1
721,507 - CA264_03090 0.49 +0.5
721,509 + CA264_03090 0.50 -0.6
721,519 + CA264_03090 0.54 +0.1
721,519 + CA264_03090 0.54 +0.5
721,524 + CA264_03090 0.56 -0.2
721,605 + +0.1
721,606 - -1.1
721,606 - -0.0
721,610 + -0.3
721,630 + -0.4
721,634 + +0.8
721,636 + +0.8
721,637 - +0.4
721,641 - -1.0
721,663 - -0.2
721,669 + -0.4
721,670 - +0.8
721,759 + -0.4
721,760 - -0.7
721,802 + -0.1
721,817 + -0.1
721,822 + -0.0
721,822 + -1.5
721,822 + -0.9
721,823 - -0.3
721,825 + -0.2
721,825 + -0.8
721,831 + -1.2
721,922 + +0.0
721,922 + +0.5
721,923 - -0.1
721,923 - +0.4
722,041 - -0.5
722,045 + -0.8
722,045 + -0.2
722,046 - +0.1

Or see this region's nucleotide sequence