Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02985

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02975 and CA264_02980 are separated by 12 nucleotidesCA264_02980 and CA264_02985 are separated by 44 nucleotidesCA264_02985 and CA264_02990 are separated by 85 nucleotidesCA264_02990 and CA264_02995 are separated by 13 nucleotides CA264_02975: CA264_02975 - NAD-dependent epimerase, at 682,723 to 683,808 _02975 CA264_02980: CA264_02980 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 683,821 to 684,384 _02980 CA264_02985: CA264_02985 - NAD(P)-dependent oxidoreductase, at 684,429 to 685,790 _02985 CA264_02990: CA264_02990 - hypothetical protein, at 685,876 to 686,649 _02990 CA264_02995: CA264_02995 - hypothetical protein, at 686,663 to 687,877 _02995 Position (kb) 684 685 686Strain fitness (log2 ratio) -2 -1 0 1 2at 683.501 kb on + strand, within CA264_02975at 683.502 kb on - strand, within CA264_02975at 683.557 kb on + strand, within CA264_02975at 683.557 kb on + strand, within CA264_02975at 683.558 kb on - strand, within CA264_02975at 683.565 kb on - strand, within CA264_02975at 683.580 kb on + strand, within CA264_02975at 683.612 kb on - strand, within CA264_02975at 683.686 kb on - strand, within CA264_02975at 683.686 kb on - strand, within CA264_02975at 683.736 kb on + strandat 683.736 kb on + strandat 683.736 kb on + strandat 683.737 kb on - strandat 683.807 kb on - strandat 683.811 kb on - strandat 683.812 kb on + strandat 683.868 kb on - strandat 683.967 kb on - strand, within CA264_02980at 683.972 kb on - strand, within CA264_02980at 683.972 kb on - strand, within CA264_02980at 683.972 kb on - strand, within CA264_02980at 683.972 kb on - strand, within CA264_02980at 684.064 kb on + strand, within CA264_02980at 684.064 kb on + strand, within CA264_02980at 684.065 kb on - strand, within CA264_02980at 684.138 kb on + strand, within CA264_02980at 684.139 kb on - strand, within CA264_02980at 684.215 kb on - strand, within CA264_02980at 684.215 kb on - strand, within CA264_02980at 684.232 kb on + strand, within CA264_02980at 684.233 kb on - strand, within CA264_02980at 684.419 kb on - strandat 684.421 kb on - strandat 684.434 kb on - strandat 684.436 kb on + strandat 684.474 kb on - strandat 684.539 kb on + strandat 684.539 kb on + strandat 684.540 kb on - strandat 684.544 kb on - strandat 684.544 kb on - strandat 684.607 kb on - strand, within CA264_02985at 684.681 kb on - strand, within CA264_02985at 684.749 kb on + strand, within CA264_02985at 684.778 kb on + strand, within CA264_02985at 684.815 kb on + strand, within CA264_02985at 684.862 kb on + strand, within CA264_02985at 684.863 kb on - strand, within CA264_02985at 684.863 kb on - strand, within CA264_02985at 684.863 kb on - strand, within CA264_02985at 684.863 kb on - strand, within CA264_02985at 684.863 kb on - strand, within CA264_02985at 684.863 kb on - strand, within CA264_02985at 685.249 kb on - strand, within CA264_02985at 685.285 kb on + strand, within CA264_02985at 685.332 kb on + strand, within CA264_02985at 685.357 kb on - strand, within CA264_02985at 685.366 kb on - strand, within CA264_02985at 685.366 kb on - strand, within CA264_02985at 685.366 kb on - strand, within CA264_02985at 685.530 kb on + strand, within CA264_02985at 685.530 kb on + strand, within CA264_02985at 685.539 kb on + strand, within CA264_02985at 685.539 kb on + strand, within CA264_02985at 685.539 kb on + strand, within CA264_02985at 685.650 kb on + strand, within CA264_02985at 685.650 kb on + strand, within CA264_02985at 685.844 kb on + strandat 686.021 kb on - strand, within CA264_02990at 686.104 kb on + strand, within CA264_02990at 686.104 kb on + strand, within CA264_02990at 686.140 kb on + strand, within CA264_02990at 686.140 kb on + strand, within CA264_02990at 686.141 kb on - strand, within CA264_02990at 686.141 kb on - strand, within CA264_02990at 686.194 kb on - strand, within CA264_02990at 686.194 kb on - strand, within CA264_02990at 686.330 kb on - strand, within CA264_02990at 686.376 kb on - strand, within CA264_02990at 686.384 kb on + strand, within CA264_02990at 686.385 kb on - strand, within CA264_02990at 686.385 kb on - strand, within CA264_02990at 686.385 kb on - strand, within CA264_02990at 686.417 kb on - strand, within CA264_02990at 686.460 kb on + strand, within CA264_02990at 686.471 kb on - strand, within CA264_02990at 686.497 kb on + strand, within CA264_02990at 686.499 kb on + strand, within CA264_02990at 686.516 kb on + strand, within CA264_02990at 686.517 kb on - strand, within CA264_02990at 686.562 kb on - strand, within CA264_02990at 686.573 kb on + strandat 686.574 kb on - strandat 686.658 kb on + strandat 686.659 kb on - strandat 686.659 kb on - strandat 686.670 kb on + strandat 686.670 kb on + strandat 686.670 kb on + strandat 686.671 kb on - strandat 686.690 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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683,501 + CA264_02975 0.72 -0.5
683,502 - CA264_02975 0.72 -0.3
683,557 + CA264_02975 0.77 +0.3
683,557 + CA264_02975 0.77 +0.1
683,558 - CA264_02975 0.77 +0.4
683,565 - CA264_02975 0.78 +0.2
683,580 + CA264_02975 0.79 -1.7
683,612 - CA264_02975 0.82 +0.4
683,686 - CA264_02975 0.89 -0.4
683,686 - CA264_02975 0.89 -0.5
683,736 + -0.1
683,736 + -0.3
683,736 + +0.4
683,737 - +0.5
683,807 - +0.1
683,811 - -0.4
683,812 + +0.1
683,868 - -0.2
683,967 - CA264_02980 0.26 +0.9
683,972 - CA264_02980 0.27 -0.5
683,972 - CA264_02980 0.27 +0.4
683,972 - CA264_02980 0.27 -0.7
683,972 - CA264_02980 0.27 -1.0
684,064 + CA264_02980 0.43 +0.1
684,064 + CA264_02980 0.43 -1.9
684,065 - CA264_02980 0.43 -0.9
684,138 + CA264_02980 0.56 +0.5
684,139 - CA264_02980 0.56 -0.0
684,215 - CA264_02980 0.70 +0.6
684,215 - CA264_02980 0.70 +0.5
684,232 + CA264_02980 0.73 -2.1
684,233 - CA264_02980 0.73 -0.4
684,419 - +0.3
684,421 - -0.4
684,434 - -0.7
684,436 + -0.9
684,474 - +0.7
684,539 + -0.7
684,539 + -1.6
684,540 - -0.7
684,544 - -0.7
684,544 - -0.0
684,607 - CA264_02985 0.13 +1.4
684,681 - CA264_02985 0.19 +0.2
684,749 + CA264_02985 0.23 +1.9
684,778 + CA264_02985 0.26 +1.9
684,815 + CA264_02985 0.28 +0.1
684,862 + CA264_02985 0.32 -1.4
684,863 - CA264_02985 0.32 +0.6
684,863 - CA264_02985 0.32 -0.8
684,863 - CA264_02985 0.32 -0.3
684,863 - CA264_02985 0.32 -0.2
684,863 - CA264_02985 0.32 +0.1
684,863 - CA264_02985 0.32 +1.0
685,249 - CA264_02985 0.60 +0.7
685,285 + CA264_02985 0.63 -0.2
685,332 + CA264_02985 0.66 -0.1
685,357 - CA264_02985 0.68 +0.7
685,366 - CA264_02985 0.69 +0.6
685,366 - CA264_02985 0.69 -0.1
685,366 - CA264_02985 0.69 +0.7
685,530 + CA264_02985 0.81 +1.0
685,530 + CA264_02985 0.81 +0.3
685,539 + CA264_02985 0.81 -0.0
685,539 + CA264_02985 0.81 -0.2
685,539 + CA264_02985 0.81 +1.7
685,650 + CA264_02985 0.90 -0.2
685,650 + CA264_02985 0.90 -1.1
685,844 + -0.8
686,021 - CA264_02990 0.19 +0.3
686,104 + CA264_02990 0.29 +0.0
686,104 + CA264_02990 0.29 -0.5
686,140 + CA264_02990 0.34 -0.2
686,140 + CA264_02990 0.34 +0.1
686,141 - CA264_02990 0.34 -0.3
686,141 - CA264_02990 0.34 -0.5
686,194 - CA264_02990 0.41 -0.3
686,194 - CA264_02990 0.41 +0.9
686,330 - CA264_02990 0.59 -0.2
686,376 - CA264_02990 0.65 +0.6
686,384 + CA264_02990 0.66 -0.4
686,385 - CA264_02990 0.66 -0.0
686,385 - CA264_02990 0.66 -0.6
686,385 - CA264_02990 0.66 -0.9
686,417 - CA264_02990 0.70 +0.1
686,460 + CA264_02990 0.75 -0.4
686,471 - CA264_02990 0.77 +0.1
686,497 + CA264_02990 0.80 +0.7
686,499 + CA264_02990 0.80 -0.1
686,516 + CA264_02990 0.83 +0.6
686,517 - CA264_02990 0.83 -0.2
686,562 - CA264_02990 0.89 +0.1
686,573 + +0.3
686,574 - -0.4
686,658 + -0.1
686,659 - -0.1
686,659 - -0.0
686,670 + +1.1
686,670 + +0.5
686,670 + -0.1
686,671 - +0.2
686,690 + +0.1

Or see this region's nucleotide sequence