Experiment: m.b. Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02475 and CA264_02480 are separated by 65 nucleotides CA264_02480 and CA264_02485 are separated by 80 nucleotides CA264_02485 and CA264_02490 are separated by 2 nucleotides
CA264_02475: CA264_02475 - xylose isomerase, at 575,349 to 576,635
_02475
CA264_02480: CA264_02480 - 3-dehydroquinate synthase, at 576,701 to 577,879
_02480
CA264_02485: CA264_02485 - polyprenyltransferase, at 577,960 to 578,868
_02485
CA264_02490: CA264_02490 - hydrolase TatD, at 578,871 to 579,812
_02490
Position (kb)
576
577
578 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 575.832 kb on + strand, within CA264_02475 at 575.921 kb on - strand, within CA264_02475 at 576.096 kb on + strand, within CA264_02475 at 576.097 kb on - strand, within CA264_02475 at 576.173 kb on - strand, within CA264_02475 at 576.302 kb on - strand, within CA264_02475 at 576.351 kb on + strand, within CA264_02475 at 576.352 kb on - strand, within CA264_02475 at 576.403 kb on + strand, within CA264_02475 at 576.403 kb on + strand, within CA264_02475 at 576.456 kb on + strand, within CA264_02475 at 576.457 kb on - strand, within CA264_02475 at 576.544 kb on + strand at 576.599 kb on + strand at 576.604 kb on + strand at 576.604 kb on + strand at 576.604 kb on + strand at 576.605 kb on - strand at 576.605 kb on - strand at 576.616 kb on + strand at 576.647 kb on + strand at 576.647 kb on + strand at 576.648 kb on - strand at 576.648 kb on - strand at 576.648 kb on - strand at 576.673 kb on + strand at 576.673 kb on + strand at 576.702 kb on + strand at 576.703 kb on - strand at 576.704 kb on + strand at 576.705 kb on - strand at 576.705 kb on - strand at 576.777 kb on - strand at 577.000 kb on - strand, within CA264_02480 at 577.054 kb on - strand, within CA264_02480 at 577.261 kb on + strand, within CA264_02480 at 577.274 kb on + strand, within CA264_02480 at 577.274 kb on + strand, within CA264_02480 at 577.457 kb on + strand, within CA264_02480 at 577.458 kb on - strand, within CA264_02480 at 577.509 kb on - strand, within CA264_02480 at 577.509 kb on - strand, within CA264_02480 at 577.539 kb on + strand, within CA264_02480 at 577.540 kb on - strand, within CA264_02480 at 577.570 kb on + strand, within CA264_02480 at 577.680 kb on + strand, within CA264_02480 at 577.681 kb on - strand, within CA264_02480 at 577.745 kb on + strand, within CA264_02480 at 577.830 kb on + strand at 577.830 kb on + strand at 577.830 kb on + strand at 577.830 kb on + strand at 577.831 kb on - strand at 577.831 kb on - strand at 577.833 kb on - strand at 577.851 kb on - strand at 577.893 kb on + strand at 577.894 kb on - strand at 577.915 kb on + strand at 577.916 kb on - strand at 577.916 kb on - strand at 577.916 kb on - strand at 577.919 kb on + strand at 577.920 kb on - strand at 577.920 kb on - strand at 577.920 kb on - strand at 577.988 kb on + strand at 578.192 kb on + strand, within CA264_02485 at 578.333 kb on + strand, within CA264_02485 at 578.333 kb on + strand, within CA264_02485 at 578.371 kb on + strand, within CA264_02485 at 578.372 kb on - strand, within CA264_02485 at 578.475 kb on - strand, within CA264_02485 at 578.575 kb on + strand, within CA264_02485 at 578.575 kb on + strand, within CA264_02485 at 578.576 kb on - strand, within CA264_02485 at 578.576 kb on - strand, within CA264_02485 at 578.671 kb on + strand, within CA264_02485 at 578.672 kb on - strand, within CA264_02485 at 578.685 kb on - strand, within CA264_02485 at 578.761 kb on - strand, within CA264_02485 at 578.799 kb on + strand at 578.800 kb on - strand at 578.800 kb on - strand at 578.802 kb on + strand at 578.802 kb on + strand at 578.803 kb on - strand at 578.849 kb on + strand at 578.850 kb on - strand at 578.877 kb on + strand at 578.877 kb on + strand at 578.877 kb on + strand at 578.878 kb on - strand at 578.878 kb on - strand at 578.878 kb on - strand at 578.878 kb on - strand at 578.878 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM remove 575,832 + CA264_02475 0.38 +0.0 575,921 - CA264_02475 0.44 -1.7 576,096 + CA264_02475 0.58 -0.7 576,097 - CA264_02475 0.58 +0.7 576,173 - CA264_02475 0.64 -0.1 576,302 - CA264_02475 0.74 -0.6 576,351 + CA264_02475 0.78 -0.2 576,352 - CA264_02475 0.78 -0.8 576,403 + CA264_02475 0.82 +0.4 576,403 + CA264_02475 0.82 +0.6 576,456 + CA264_02475 0.86 -0.5 576,457 - CA264_02475 0.86 -2.1 576,544 + +0.3 576,599 + -0.5 576,604 + -1.2 576,604 + -0.0 576,604 + +1.6 576,605 - +2.2 576,605 - -0.2 576,616 + -0.8 576,647 + -0.2 576,647 + -0.3 576,648 - +1.9 576,648 - -0.5 576,648 - -0.1 576,673 + +1.7 576,673 + -0.3 576,702 + -0.5 576,703 - -1.5 576,704 + +0.8 576,705 - -0.5 576,705 - -0.5 576,777 - -0.5 577,000 - CA264_02480 0.25 -0.2 577,054 - CA264_02480 0.30 -0.1 577,261 + CA264_02480 0.47 -0.3 577,274 + CA264_02480 0.49 -0.4 577,274 + CA264_02480 0.49 -0.3 577,457 + CA264_02480 0.64 +0.3 577,458 - CA264_02480 0.64 -0.1 577,509 - CA264_02480 0.69 +1.1 577,509 - CA264_02480 0.69 -0.4 577,539 + CA264_02480 0.71 -0.1 577,540 - CA264_02480 0.71 +0.0 577,570 + CA264_02480 0.74 +0.3 577,680 + CA264_02480 0.83 +0.1 577,681 - CA264_02480 0.83 +0.6 577,745 + CA264_02480 0.89 -0.4 577,830 + +0.1 577,830 + +1.5 577,830 + -0.2 577,830 + +0.4 577,831 - +0.8 577,831 - -0.3 577,833 - -0.2 577,851 - +0.2 577,893 + -1.0 577,894 - +0.5 577,915 + +0.2 577,916 - -1.7 577,916 - -0.3 577,916 - -0.3 577,919 + -1.7 577,920 - -0.3 577,920 - -0.9 577,920 - +0.5 577,988 + +0.8 578,192 + CA264_02485 0.26 -0.6 578,333 + CA264_02485 0.41 +0.3 578,333 + CA264_02485 0.41 -0.5 578,371 + CA264_02485 0.45 +0.3 578,372 - CA264_02485 0.45 +1.6 578,475 - CA264_02485 0.57 +0.3 578,575 + CA264_02485 0.68 +0.0 578,575 + CA264_02485 0.68 +0.5 578,576 - CA264_02485 0.68 +0.2 578,576 - CA264_02485 0.68 -0.1 578,671 + CA264_02485 0.78 +0.3 578,672 - CA264_02485 0.78 -0.4 578,685 - CA264_02485 0.80 +0.5 578,761 - CA264_02485 0.88 -1.0 578,799 + -0.7 578,800 - +0.5 578,800 - -0.6 578,802 + -0.2 578,802 + +0.1 578,803 - -0.7 578,849 + -0.6 578,850 - +0.2 578,877 + -1.1 578,877 + +0.6 578,877 + +0.4 578,878 - -0.3 578,878 - +0.0 578,878 - +0.1 578,878 - +0.6 578,878 - -0.3
Or see this region's nucleotide sequence