Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01225

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01220 and CA264_01225 are separated by 172 nucleotidesCA264_01225 and CA264_01230 are separated by 115 nucleotidesCA264_01230 and CA264_01235 are separated by 108 nucleotides CA264_01220: CA264_01220 - hypothetical protein, at 288,998 to 290,794 _01220 CA264_01225: CA264_01225 - X-Pro dipeptidyl-peptidase, at 290,967 to 292,856 _01225 CA264_01230: CA264_01230 - hypothetical protein, at 292,972 to 293,196 _01230 CA264_01235: CA264_01235 - zinc-binding alcohol dehydrogenase, at 293,305 to 294,252 _01235 Position (kb) 290 291 292 293Strain fitness (log2 ratio) -2 -1 0 1 2at 290.017 kb on + strand, within CA264_01220at 290.036 kb on + strand, within CA264_01220at 290.036 kb on + strand, within CA264_01220at 290.039 kb on - strand, within CA264_01220at 290.039 kb on - strand, within CA264_01220at 290.050 kb on + strand, within CA264_01220at 290.050 kb on + strand, within CA264_01220at 290.109 kb on + strand, within CA264_01220at 290.110 kb on - strand, within CA264_01220at 290.132 kb on + strand, within CA264_01220at 290.132 kb on + strand, within CA264_01220at 290.132 kb on + strand, within CA264_01220at 290.133 kb on - strand, within CA264_01220at 290.149 kb on + strand, within CA264_01220at 290.150 kb on - strand, within CA264_01220at 290.150 kb on - strand, within CA264_01220at 290.152 kb on - strand, within CA264_01220at 290.152 kb on - strand, within CA264_01220at 290.200 kb on + strand, within CA264_01220at 290.200 kb on + strand, within CA264_01220at 290.201 kb on - strand, within CA264_01220at 290.201 kb on - strand, within CA264_01220at 290.202 kb on + strand, within CA264_01220at 290.202 kb on + strand, within CA264_01220at 290.203 kb on - strand, within CA264_01220at 290.849 kb on + strandat 290.855 kb on + strandat 290.858 kb on + strandat 290.858 kb on + strandat 290.859 kb on - strandat 290.862 kb on + strandat 290.862 kb on + strandat 290.862 kb on + strandat 290.863 kb on - strandat 290.863 kb on - strandat 290.863 kb on - strandat 290.884 kb on + strandat 290.885 kb on - strandat 290.920 kb on + strandat 290.927 kb on - strandat 290.928 kb on + strandat 290.928 kb on + strandat 290.929 kb on - strandat 290.969 kb on - strandat 290.979 kb on + strandat 290.979 kb on + strandat 291.015 kb on + strandat 291.074 kb on - strandat 291.152 kb on + strandat 291.153 kb on - strandat 291.153 kb on - strandat 291.155 kb on - strandat 291.384 kb on + strand, within CA264_01225at 291.385 kb on - strand, within CA264_01225at 291.385 kb on - strand, within CA264_01225at 291.494 kb on - strand, within CA264_01225at 291.574 kb on - strand, within CA264_01225at 291.661 kb on - strand, within CA264_01225at 291.748 kb on + strand, within CA264_01225at 292.039 kb on + strand, within CA264_01225at 292.040 kb on - strand, within CA264_01225at 292.224 kb on - strand, within CA264_01225at 292.224 kb on - strand, within CA264_01225at 292.453 kb on - strand, within CA264_01225at 292.517 kb on + strand, within CA264_01225at 292.610 kb on - strand, within CA264_01225at 292.665 kb on - strand, within CA264_01225at 292.717 kb on - strandat 292.753 kb on + strandat 292.754 kb on - strandat 292.770 kb on + strandat 292.785 kb on - strandat 292.833 kb on + strandat 292.856 kb on + strandat 292.857 kb on - strandat 292.861 kb on + strandat 292.876 kb on + strandat 292.877 kb on - strandat 292.896 kb on + strandat 292.896 kb on + strandat 292.897 kb on - strandat 292.900 kb on + strandat 292.901 kb on - strandat 292.901 kb on - strandat 292.905 kb on + strandat 292.907 kb on + strandat 292.907 kb on + strandat 292.907 kb on + strandat 292.912 kb on + strandat 292.913 kb on - strandat 292.919 kb on + strandat 292.944 kb on + strandat 292.945 kb on - strandat 292.945 kb on - strandat 292.964 kb on + strandat 292.965 kb on - strandat 292.966 kb on + strandat 292.966 kb on + strandat 292.966 kb on + strandat 292.967 kb on - strandat 292.968 kb on + strandat 292.969 kb on - strandat 293.262 kb on + strandat 293.275 kb on + strandat 293.275 kb on + strandat 293.305 kb on - strandat 293.305 kb on - strandat 293.318 kb on - strandat 293.379 kb on - strandat 293.456 kb on + strand, within CA264_01235at 293.456 kb on + strand, within CA264_01235at 293.457 kb on - strand, within CA264_01235at 293.547 kb on + strand, within CA264_01235at 293.566 kb on + strand, within CA264_01235at 293.609 kb on - strand, within CA264_01235at 293.660 kb on - strand, within CA264_01235at 293.660 kb on - strand, within CA264_01235at 293.694 kb on + strand, within CA264_01235at 293.774 kb on + strand, within CA264_01235at 293.795 kb on + strand, within CA264_01235at 293.796 kb on - strand, within CA264_01235

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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290,017 + CA264_01220 0.57 -0.3
290,036 + CA264_01220 0.58 -0.0
290,036 + CA264_01220 0.58 +0.2
290,039 - CA264_01220 0.58 +0.4
290,039 - CA264_01220 0.58 +0.4
290,050 + CA264_01220 0.59 -0.5
290,050 + CA264_01220 0.59 +0.3
290,109 + CA264_01220 0.62 -0.2
290,110 - CA264_01220 0.62 -0.2
290,132 + CA264_01220 0.63 -0.6
290,132 + CA264_01220 0.63 -1.3
290,132 + CA264_01220 0.63 -0.4
290,133 - CA264_01220 0.63 -1.4
290,149 + CA264_01220 0.64 -0.3
290,150 - CA264_01220 0.64 -1.1
290,150 - CA264_01220 0.64 -0.2
290,152 - CA264_01220 0.64 +0.4
290,152 - CA264_01220 0.64 -0.8
290,200 + CA264_01220 0.67 -2.0
290,200 + CA264_01220 0.67 +1.4
290,201 - CA264_01220 0.67 -0.1
290,201 - CA264_01220 0.67 +0.2
290,202 + CA264_01220 0.67 -0.0
290,202 + CA264_01220 0.67 -0.4
290,203 - CA264_01220 0.67 +1.4
290,849 + +0.1
290,855 + -2.5
290,858 + -0.4
290,858 + -0.2
290,859 - -1.0
290,862 + -1.8
290,862 + +0.1
290,862 + -0.5
290,863 - -0.1
290,863 - -0.1
290,863 - +1.6
290,884 + -1.8
290,885 - -0.6
290,920 + +0.4
290,927 - +0.1
290,928 + +0.8
290,928 + -1.1
290,929 - -0.2
290,969 - +0.3
290,979 + +1.4
290,979 + +0.0
291,015 + -0.3
291,074 - -0.1
291,152 + -0.1
291,153 - -0.8
291,153 - +1.0
291,155 - -0.9
291,384 + CA264_01225 0.22 -0.1
291,385 - CA264_01225 0.22 +0.5
291,385 - CA264_01225 0.22 -0.1
291,494 - CA264_01225 0.28 +0.5
291,574 - CA264_01225 0.32 -0.2
291,661 - CA264_01225 0.37 -0.6
291,748 + CA264_01225 0.41 +0.3
292,039 + CA264_01225 0.57 +0.5
292,040 - CA264_01225 0.57 +0.2
292,224 - CA264_01225 0.67 +2.2
292,224 - CA264_01225 0.67 +0.1
292,453 - CA264_01225 0.79 +1.1
292,517 + CA264_01225 0.82 -0.7
292,610 - CA264_01225 0.87 -0.4
292,665 - CA264_01225 0.90 -0.1
292,717 - +0.2
292,753 + -0.4
292,754 - -1.6
292,770 + +0.4
292,785 - +1.4
292,833 + -1.0
292,856 + -0.7
292,857 - +1.4
292,861 + +0.5
292,876 + +0.1
292,877 - -0.7
292,896 + +0.9
292,896 + -0.0
292,897 - -1.1
292,900 + -0.0
292,901 - -0.1
292,901 - +0.2
292,905 + -0.1
292,907 + -0.2
292,907 + +0.1
292,907 + -0.3
292,912 + +0.2
292,913 - +0.1
292,919 + -0.4
292,944 + -0.8
292,945 - -0.3
292,945 - -0.7
292,964 + -0.9
292,965 - -0.3
292,966 + -0.2
292,966 + -0.4
292,966 + -0.2
292,967 - -0.2
292,968 + +0.2
292,969 - -0.2
293,262 + +0.5
293,275 + -0.8
293,275 + -2.7
293,305 - -0.4
293,305 - -0.0
293,318 - +0.9
293,379 - -0.2
293,456 + CA264_01235 0.16 -0.3
293,456 + CA264_01235 0.16 -1.1
293,457 - CA264_01235 0.16 -0.6
293,547 + CA264_01235 0.26 +0.3
293,566 + CA264_01235 0.28 -0.3
293,609 - CA264_01235 0.32 -0.1
293,660 - CA264_01235 0.37 +0.1
293,660 - CA264_01235 0.37 +1.9
293,694 + CA264_01235 0.41 -0.2
293,774 + CA264_01235 0.49 -0.3
293,795 + CA264_01235 0.52 -0.4
293,796 - CA264_01235 0.52 -0.4

Or see this region's nucleotide sequence