Experiment: m.b. Chlorite 0.08 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_00080 and CA264_00085 are separated by 119 nucleotides CA264_00085 and CA264_00090 overlap by 4 nucleotides
CA264_00080: CA264_00080 - cation acetate symporter, at 20,628 to 22,319
_00080
CA264_00085: CA264_00085 - hypothetical protein, at 22,439 to 22,657
_00085
CA264_00090: CA264_00090 - histidine kinase, at 22,654 to 25,377
_00090
Position (kb)
22
23 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 21.498 kb on + strand, within CA264_00080 at 21.535 kb on - strand, within CA264_00080 at 21.654 kb on + strand, within CA264_00080 at 21.674 kb on - strand, within CA264_00080 at 21.689 kb on - strand, within CA264_00080 at 21.745 kb on + strand, within CA264_00080 at 21.813 kb on - strand, within CA264_00080 at 21.818 kb on + strand, within CA264_00080 at 21.819 kb on - strand, within CA264_00080 at 21.899 kb on - strand, within CA264_00080 at 21.942 kb on + strand, within CA264_00080 at 21.943 kb on - strand, within CA264_00080 at 22.013 kb on + strand, within CA264_00080 at 22.099 kb on - strand, within CA264_00080 at 22.205 kb on + strand at 22.222 kb on + strand at 22.328 kb on - strand at 22.375 kb on - strand at 22.423 kb on + strand at 22.423 kb on + strand at 22.424 kb on - strand at 22.424 kb on - strand at 22.424 kb on - strand at 22.424 kb on - strand at 22.427 kb on + strand at 22.428 kb on - strand at 22.525 kb on + strand, within CA264_00085 at 22.562 kb on + strand, within CA264_00085 at 22.562 kb on + strand, within CA264_00085 at 22.563 kb on - strand, within CA264_00085 at 22.563 kb on - strand, within CA264_00085 at 22.606 kb on - strand, within CA264_00085 at 22.618 kb on - strand, within CA264_00085 at 22.625 kb on - strand, within CA264_00085 at 22.768 kb on + strand at 22.772 kb on + strand at 22.772 kb on + strand at 22.773 kb on - strand at 22.773 kb on - strand at 22.773 kb on - strand at 22.773 kb on - strand at 22.773 kb on - strand at 22.773 kb on - strand at 22.774 kb on + strand at 22.817 kb on - strand at 22.867 kb on + strand at 22.868 kb on - strand at 22.878 kb on + strand at 22.879 kb on - strand at 22.965 kb on + strand, within CA264_00090 at 23.041 kb on + strand, within CA264_00090 at 23.041 kb on + strand, within CA264_00090 at 23.042 kb on - strand, within CA264_00090 at 23.102 kb on + strand, within CA264_00090 at 23.137 kb on - strand, within CA264_00090 at 23.186 kb on + strand, within CA264_00090 at 23.186 kb on + strand, within CA264_00090 at 23.186 kb on + strand, within CA264_00090 at 23.187 kb on - strand, within CA264_00090 at 23.284 kb on + strand, within CA264_00090 at 23.285 kb on - strand, within CA264_00090 at 23.285 kb on - strand, within CA264_00090 at 23.285 kb on - strand, within CA264_00090 at 23.541 kb on + strand, within CA264_00090
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM remove 21,498 + CA264_00080 0.51 -0.9 21,535 - CA264_00080 0.54 -0.5 21,654 + CA264_00080 0.61 +0.7 21,674 - CA264_00080 0.62 +0.2 21,689 - CA264_00080 0.63 +1.1 21,745 + CA264_00080 0.66 -0.3 21,813 - CA264_00080 0.70 -0.7 21,818 + CA264_00080 0.70 -0.5 21,819 - CA264_00080 0.70 -0.7 21,899 - CA264_00080 0.75 -0.9 21,942 + CA264_00080 0.78 +0.1 21,943 - CA264_00080 0.78 +0.3 22,013 + CA264_00080 0.82 +0.4 22,099 - CA264_00080 0.87 +0.7 22,205 + -0.4 22,222 + +0.6 22,328 - +0.7 22,375 - +0.3 22,423 + -0.8 22,423 + +0.1 22,424 - +0.1 22,424 - -1.0 22,424 - -0.2 22,424 - +0.4 22,427 + +0.0 22,428 - -0.6 22,525 + CA264_00085 0.39 +0.7 22,562 + CA264_00085 0.56 +1.2 22,562 + CA264_00085 0.56 -1.0 22,563 - CA264_00085 0.57 +0.3 22,563 - CA264_00085 0.57 -0.1 22,606 - CA264_00085 0.76 -0.1 22,618 - CA264_00085 0.82 +0.9 22,625 - CA264_00085 0.85 +0.3 22,768 + -0.4 22,772 + -2.3 22,772 + -1.0 22,773 - -0.2 22,773 - -0.1 22,773 - -0.4 22,773 - +0.6 22,773 - +0.1 22,773 - +1.8 22,774 + -0.4 22,817 - +0.2 22,867 + +0.5 22,868 - -0.4 22,878 + +0.0 22,879 - +0.4 22,965 + CA264_00090 0.11 +1.6 23,041 + CA264_00090 0.14 -0.6 23,041 + CA264_00090 0.14 -0.1 23,042 - CA264_00090 0.14 -1.2 23,102 + CA264_00090 0.16 -0.1 23,137 - CA264_00090 0.18 +0.5 23,186 + CA264_00090 0.20 -0.7 23,186 + CA264_00090 0.20 +0.0 23,186 + CA264_00090 0.20 -0.6 23,187 - CA264_00090 0.20 -0.8 23,284 + CA264_00090 0.23 -0.8 23,285 - CA264_00090 0.23 -0.1 23,285 - CA264_00090 0.23 +1.4 23,285 - CA264_00090 0.23 -1.2 23,541 + CA264_00090 0.33 -0.7
Or see this region's nucleotide sequence