Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00085

Experiment: m.b. Chlorite 0.08 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00080 and CA264_00085 are separated by 119 nucleotidesCA264_00085 and CA264_00090 overlap by 4 nucleotides CA264_00080: CA264_00080 - cation acetate symporter, at 20,628 to 22,319 _00080 CA264_00085: CA264_00085 - hypothetical protein, at 22,439 to 22,657 _00085 CA264_00090: CA264_00090 - histidine kinase, at 22,654 to 25,377 _00090 Position (kb) 22 23Strain fitness (log2 ratio) -2 -1 0 1 2at 21.498 kb on + strand, within CA264_00080at 21.535 kb on - strand, within CA264_00080at 21.654 kb on + strand, within CA264_00080at 21.674 kb on - strand, within CA264_00080at 21.689 kb on - strand, within CA264_00080at 21.745 kb on + strand, within CA264_00080at 21.813 kb on - strand, within CA264_00080at 21.818 kb on + strand, within CA264_00080at 21.819 kb on - strand, within CA264_00080at 21.899 kb on - strand, within CA264_00080at 21.942 kb on + strand, within CA264_00080at 21.943 kb on - strand, within CA264_00080at 22.013 kb on + strand, within CA264_00080at 22.099 kb on - strand, within CA264_00080at 22.205 kb on + strandat 22.222 kb on + strandat 22.328 kb on - strandat 22.375 kb on - strandat 22.423 kb on + strandat 22.423 kb on + strandat 22.424 kb on - strandat 22.424 kb on - strandat 22.424 kb on - strandat 22.424 kb on - strandat 22.427 kb on + strandat 22.428 kb on - strandat 22.525 kb on + strand, within CA264_00085at 22.562 kb on + strand, within CA264_00085at 22.562 kb on + strand, within CA264_00085at 22.563 kb on - strand, within CA264_00085at 22.563 kb on - strand, within CA264_00085at 22.606 kb on - strand, within CA264_00085at 22.618 kb on - strand, within CA264_00085at 22.625 kb on - strand, within CA264_00085at 22.768 kb on + strandat 22.772 kb on + strandat 22.772 kb on + strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.773 kb on - strandat 22.774 kb on + strandat 22.817 kb on - strandat 22.867 kb on + strandat 22.868 kb on - strandat 22.878 kb on + strandat 22.879 kb on - strandat 22.965 kb on + strand, within CA264_00090at 23.041 kb on + strand, within CA264_00090at 23.041 kb on + strand, within CA264_00090at 23.042 kb on - strand, within CA264_00090at 23.102 kb on + strand, within CA264_00090at 23.137 kb on - strand, within CA264_00090at 23.186 kb on + strand, within CA264_00090at 23.186 kb on + strand, within CA264_00090at 23.186 kb on + strand, within CA264_00090at 23.187 kb on - strand, within CA264_00090at 23.284 kb on + strand, within CA264_00090at 23.285 kb on - strand, within CA264_00090at 23.285 kb on - strand, within CA264_00090at 23.285 kb on - strand, within CA264_00090at 23.541 kb on + strand, within CA264_00090

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorite 0.08 mM
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21,498 + CA264_00080 0.51 -0.9
21,535 - CA264_00080 0.54 -0.5
21,654 + CA264_00080 0.61 +0.7
21,674 - CA264_00080 0.62 +0.2
21,689 - CA264_00080 0.63 +1.1
21,745 + CA264_00080 0.66 -0.3
21,813 - CA264_00080 0.70 -0.7
21,818 + CA264_00080 0.70 -0.5
21,819 - CA264_00080 0.70 -0.7
21,899 - CA264_00080 0.75 -0.9
21,942 + CA264_00080 0.78 +0.1
21,943 - CA264_00080 0.78 +0.3
22,013 + CA264_00080 0.82 +0.4
22,099 - CA264_00080 0.87 +0.7
22,205 + -0.4
22,222 + +0.6
22,328 - +0.7
22,375 - +0.3
22,423 + -0.8
22,423 + +0.1
22,424 - +0.1
22,424 - -1.0
22,424 - -0.2
22,424 - +0.4
22,427 + +0.0
22,428 - -0.6
22,525 + CA264_00085 0.39 +0.7
22,562 + CA264_00085 0.56 +1.2
22,562 + CA264_00085 0.56 -1.0
22,563 - CA264_00085 0.57 +0.3
22,563 - CA264_00085 0.57 -0.1
22,606 - CA264_00085 0.76 -0.1
22,618 - CA264_00085 0.82 +0.9
22,625 - CA264_00085 0.85 +0.3
22,768 + -0.4
22,772 + -2.3
22,772 + -1.0
22,773 - -0.2
22,773 - -0.1
22,773 - -0.4
22,773 - +0.6
22,773 - +0.1
22,773 - +1.8
22,774 + -0.4
22,817 - +0.2
22,867 + +0.5
22,868 - -0.4
22,878 + +0.0
22,879 - +0.4
22,965 + CA264_00090 0.11 +1.6
23,041 + CA264_00090 0.14 -0.6
23,041 + CA264_00090 0.14 -0.1
23,042 - CA264_00090 0.14 -1.2
23,102 + CA264_00090 0.16 -0.1
23,137 - CA264_00090 0.18 +0.5
23,186 + CA264_00090 0.20 -0.7
23,186 + CA264_00090 0.20 +0.0
23,186 + CA264_00090 0.20 -0.6
23,187 - CA264_00090 0.20 -0.8
23,284 + CA264_00090 0.23 -0.8
23,285 - CA264_00090 0.23 -0.1
23,285 - CA264_00090 0.23 +1.4
23,285 - CA264_00090 0.23 -1.2
23,541 + CA264_00090 0.33 -0.7

Or see this region's nucleotide sequence