Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0946 and Atu0947 are separated by 124 nucleotides Atu0947 and Atu0948 are separated by 31 nucleotides Atu0948 and Atu0949 are separated by 155 nucleotides
Atu0946: Atu0946 - dehydrogenase, at 935,237 to 936,337
Atu0946
Atu0947: Atu0947 - transcriptional regulator, AsnC family, at 936,462 to 936,893
Atu0947
Atu0948: Atu0948 - hypothetical protein, at 936,925 to 937,293
Atu0948
Atu0949: Atu0949 - hypothetical protein, at 937,449 to 938,288
Atu0949
Position (kb) 936
937
938 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 935.970 kb on + strand, within Atu0946 at 935.973 kb on - strand, within Atu0946 at 936.014 kb on + strand, within Atu0946 at 936.014 kb on + strand, within Atu0946 at 936.022 kb on - strand, within Atu0946 at 936.050 kb on - strand, within Atu0946 at 936.060 kb on - strand, within Atu0946 at 936.292 kb on + strand at 936.303 kb on + strand at 936.310 kb on - strand at 936.535 kb on - strand, within Atu0947 at 936.661 kb on + strand, within Atu0947 at 936.661 kb on + strand, within Atu0947 at 936.676 kb on + strand, within Atu0947 at 936.857 kb on + strand at 936.906 kb on + strand at 936.906 kb on + strand at 936.906 kb on + strand at 936.906 kb on + strand at 936.906 kb on + strand at 936.906 kb on + strand at 936.923 kb on + strand at 937.121 kb on - strand, within Atu0948 at 937.148 kb on + strand, within Atu0948 at 937.213 kb on - strand, within Atu0948 at 937.237 kb on + strand, within Atu0948 at 937.237 kb on + strand, within Atu0948 at 937.237 kb on + strand, within Atu0948 at 937.240 kb on - strand, within Atu0948 at 937.245 kb on - strand, within Atu0948 at 937.245 kb on - strand, within Atu0948 at 937.245 kb on - strand, within Atu0948 at 937.532 kb on + strand at 937.552 kb on + strand, within Atu0949 at 937.628 kb on - strand, within Atu0949 at 937.645 kb on + strand, within Atu0949 at 937.653 kb on - strand, within Atu0949 at 937.729 kb on - strand, within Atu0949 at 937.973 kb on - strand, within Atu0949 at 937.975 kb on - strand, within Atu0949 at 937.995 kb on + strand, within Atu0949 at 938.003 kb on - strand, within Atu0949 at 938.003 kb on - strand, within Atu0949 at 938.020 kb on + strand, within Atu0949 at 938.075 kb on + strand, within Atu0949 at 938.146 kb on - strand, within Atu0949 at 938.165 kb on + strand, within Atu0949 at 938.165 kb on + strand, within Atu0949 at 938.165 kb on + strand, within Atu0949 at 938.173 kb on - strand, within Atu0949 at 938.173 kb on - strand, within Atu0949 at 938.173 kb on - strand, within Atu0949 at 938.184 kb on + strand, within Atu0949 at 938.193 kb on + strand, within Atu0949 at 938.227 kb on + strand at 938.273 kb on - strand at 938.283 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 935,970 + Atu0946 0.67 -2.6 935,973 - Atu0946 0.67 -1.4 936,014 + Atu0946 0.71 -0.4 936,014 + Atu0946 0.71 -0.2 936,022 - Atu0946 0.71 -2.8 936,050 - Atu0946 0.74 +0.2 936,060 - Atu0946 0.75 -0.7 936,292 + -0.9 936,303 + -0.1 936,310 - +0.2 936,535 - Atu0947 0.17 -1.7 936,661 + Atu0947 0.46 +0.6 936,661 + Atu0947 0.46 -0.7 936,676 + Atu0947 0.50 -0.5 936,857 + -0.5 936,906 + -0.3 936,906 + -0.2 936,906 + +1.3 936,906 + +0.1 936,906 + +0.1 936,906 + -0.3 936,923 + +0.1 937,121 - Atu0948 0.53 -0.8 937,148 + Atu0948 0.60 +0.2 937,213 - Atu0948 0.78 -0.4 937,237 + Atu0948 0.85 -1.3 937,237 + Atu0948 0.85 -0.1 937,237 + Atu0948 0.85 +0.0 937,240 - Atu0948 0.85 +0.0 937,245 - Atu0948 0.87 +0.5 937,245 - Atu0948 0.87 -0.5 937,245 - Atu0948 0.87 -0.5 937,532 + -0.2 937,552 + Atu0949 0.12 -0.0 937,628 - Atu0949 0.21 -0.6 937,645 + Atu0949 0.23 +0.4 937,653 - Atu0949 0.24 +0.4 937,729 - Atu0949 0.33 +0.6 937,973 - Atu0949 0.62 +0.1 937,975 - Atu0949 0.63 -0.2 937,995 + Atu0949 0.65 +0.3 938,003 - Atu0949 0.66 +0.1 938,003 - Atu0949 0.66 +1.6 938,020 + Atu0949 0.68 +0.3 938,075 + Atu0949 0.75 -0.1 938,146 - Atu0949 0.83 -0.3 938,165 + Atu0949 0.85 +2.3 938,165 + Atu0949 0.85 -0.1 938,165 + Atu0949 0.85 +0.7 938,173 - Atu0949 0.86 +0.0 938,173 - Atu0949 0.86 +1.0 938,173 - Atu0949 0.86 +0.7 938,184 + Atu0949 0.88 -1.5 938,193 + Atu0949 0.89 -0.1 938,227 + -0.9 938,273 - -0.4 938,283 - -0.2
Or see this region's nucleotide sequence