Experiment: 30_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03730 and AMB_RS03735 are separated by 108 nucleotides AMB_RS03735 and AMB_RS23145 overlap by 316 nucleotides AMB_RS23145 and AMB_RS03740 are separated by 143 nucleotides
AMB_RS03730: AMB_RS03730 - 50S ribosomal protein L11 methyltransferase, at 788,390 to 789,289
_RS03730
AMB_RS03735: AMB_RS03735 - methyl-accepting chemotaxis protein, at 789,398 to 790,561
_RS03735
AMB_RS23145: AMB_RS23145 - hypothetical protein, at 790,246 to 791,394
_RS23145
AMB_RS03740: AMB_RS03740 - signal transduction protein, at 791,538 to 793,577
_RS03740
Position (kb) 790
791
792 Strain fitness (log2 ratio) -1
0
1
2 at 789.306 kb on + strand at 789.307 kb on - strand at 789.345 kb on - strand at 789.375 kb on + strand at 789.375 kb on + strand at 789.375 kb on + strand at 789.376 kb on - strand at 789.376 kb on - strand at 789.376 kb on - strand at 789.376 kb on - strand at 789.497 kb on + strand at 789.497 kb on + strand at 789.498 kb on - strand at 789.498 kb on - strand at 789.498 kb on - strand at 789.498 kb on - strand at 789.498 kb on - strand at 789.602 kb on + strand, within AMB_RS03735 at 789.602 kb on + strand, within AMB_RS03735 at 789.602 kb on + strand, within AMB_RS03735 at 789.602 kb on + strand, within AMB_RS03735 at 789.603 kb on - strand, within AMB_RS03735 at 789.603 kb on - strand, within AMB_RS03735 at 789.603 kb on - strand, within AMB_RS03735 at 789.603 kb on - strand, within AMB_RS03735 at 789.635 kb on + strand, within AMB_RS03735 at 789.635 kb on + strand, within AMB_RS03735 at 789.635 kb on + strand, within AMB_RS03735 at 789.635 kb on + strand, within AMB_RS03735 at 789.635 kb on + strand, within AMB_RS03735 at 789.635 kb on + strand, within AMB_RS03735 at 789.636 kb on - strand, within AMB_RS03735 at 789.636 kb on - strand, within AMB_RS03735 at 789.636 kb on - strand, within AMB_RS03735 at 789.636 kb on - strand, within AMB_RS03735 at 789.636 kb on - strand, within AMB_RS03735 at 789.938 kb on + strand, within AMB_RS03735 at 791.098 kb on + strand, within AMB_RS23145 at 791.406 kb on - strand at 791.406 kb on - strand at 791.488 kb on + strand at 791.488 kb on + strand at 791.507 kb on - strand at 791.724 kb on + strand at 791.725 kb on - strand at 791.725 kb on - strand at 791.725 kb on - strand at 791.952 kb on + strand, within AMB_RS03740 at 791.953 kb on - strand, within AMB_RS03740 at 791.959 kb on - strand, within AMB_RS03740 at 792.042 kb on + strand, within AMB_RS03740 at 792.064 kb on + strand, within AMB_RS03740 at 792.064 kb on + strand, within AMB_RS03740 at 792.065 kb on - strand, within AMB_RS03740 at 792.075 kb on + strand, within AMB_RS03740 at 792.075 kb on + strand, within AMB_RS03740 at 792.075 kb on + strand, within AMB_RS03740 at 792.076 kb on - strand, within AMB_RS03740 at 792.076 kb on - strand, within AMB_RS03740 at 792.076 kb on - strand, within AMB_RS03740 at 792.099 kb on + strand, within AMB_RS03740 at 792.100 kb on - strand, within AMB_RS03740 at 792.138 kb on + strand, within AMB_RS03740 at 792.139 kb on - strand, within AMB_RS03740 at 792.276 kb on + strand, within AMB_RS03740 at 792.309 kb on + strand, within AMB_RS03740 at 792.310 kb on - strand, within AMB_RS03740 at 792.360 kb on + strand, within AMB_RS03740 at 792.361 kb on - strand, within AMB_RS03740
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_1 remove 789,306 + -0.5 789,307 - +1.6 789,345 - +0.0 789,375 + -0.5 789,375 + -0.5 789,375 + -1.0 789,376 - -1.6 789,376 - -0.3 789,376 - -0.7 789,376 - -0.2 789,497 + -0.6 789,497 + -0.1 789,498 - +0.8 789,498 - -0.9 789,498 - -0.6 789,498 - -0.2 789,498 - -0.4 789,602 + AMB_RS03735 0.18 +0.2 789,602 + AMB_RS03735 0.18 -0.2 789,602 + AMB_RS03735 0.18 -0.1 789,602 + AMB_RS03735 0.18 -0.3 789,603 - AMB_RS03735 0.18 -0.2 789,603 - AMB_RS03735 0.18 -0.2 789,603 - AMB_RS03735 0.18 -0.3 789,603 - AMB_RS03735 0.18 -1.1 789,635 + AMB_RS03735 0.20 -0.5 789,635 + AMB_RS03735 0.20 +0.5 789,635 + AMB_RS03735 0.20 -0.1 789,635 + AMB_RS03735 0.20 -1.2 789,635 + AMB_RS03735 0.20 -0.1 789,635 + AMB_RS03735 0.20 +1.0 789,636 - AMB_RS03735 0.20 +0.4 789,636 - AMB_RS03735 0.20 +0.0 789,636 - AMB_RS03735 0.20 -0.3 789,636 - AMB_RS03735 0.20 +0.8 789,636 - AMB_RS03735 0.20 +0.2 789,938 + AMB_RS03735 0.46 -0.3 791,098 + AMB_RS23145 0.74 -0.3 791,406 - +0.9 791,406 - +0.1 791,488 + +1.1 791,488 + +0.1 791,507 - -0.5 791,724 + +0.5 791,725 - +0.4 791,725 - +0.9 791,725 - -1.2 791,952 + AMB_RS03740 0.20 -0.5 791,953 - AMB_RS03740 0.20 +0.5 791,959 - AMB_RS03740 0.21 +0.4 792,042 + AMB_RS03740 0.25 +0.4 792,064 + AMB_RS03740 0.26 +0.9 792,064 + AMB_RS03740 0.26 +0.4 792,065 - AMB_RS03740 0.26 -0.0 792,075 + AMB_RS03740 0.26 -1.6 792,075 + AMB_RS03740 0.26 -0.3 792,075 + AMB_RS03740 0.26 +0.1 792,076 - AMB_RS03740 0.26 +0.4 792,076 - AMB_RS03740 0.26 +0.0 792,076 - AMB_RS03740 0.26 -0.3 792,099 + AMB_RS03740 0.28 +0.2 792,100 - AMB_RS03740 0.28 -0.1 792,138 + AMB_RS03740 0.29 -0.3 792,139 - AMB_RS03740 0.29 +2.1 792,276 + AMB_RS03740 0.36 -0.9 792,309 + AMB_RS03740 0.38 -0.7 792,310 - AMB_RS03740 0.38 -0.7 792,360 + AMB_RS03740 0.40 +0.0 792,361 - AMB_RS03740 0.40 -0.0
Or see this region's nucleotide sequence