Experiment: 30_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23095 and AMB_RS00580 are separated by 69 nucleotides
AMB_RS23095: AMB_RS23095 - class I SAM-dependent methyltransferase, at 131,919 to 132,917
_RS23095
AMB_RS00580: AMB_RS00580 - glycosyltransferase, at 132,987 to 134,021
_RS00580
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 130.941 kb on - strand at 130.947 kb on + strand at 130.947 kb on + strand at 130.947 kb on + strand at 130.948 kb on - strand at 130.982 kb on - strand at 131.028 kb on + strand at 131.091 kb on + strand at 131.091 kb on + strand at 131.091 kb on + strand at 131.269 kb on + strand at 131.269 kb on + strand at 131.270 kb on - strand at 131.270 kb on - strand at 131.397 kb on - strand at 131.404 kb on + strand at 131.404 kb on + strand at 131.404 kb on + strand at 131.404 kb on + strand at 131.404 kb on + strand at 131.405 kb on - strand at 131.405 kb on - strand at 131.405 kb on - strand at 131.405 kb on - strand at 131.405 kb on - strand at 131.405 kb on - strand at 131.474 kb on + strand at 131.474 kb on + strand at 131.474 kb on + strand at 131.474 kb on + strand at 131.474 kb on + strand at 131.474 kb on + strand at 131.474 kb on + strand at 131.474 kb on + strand at 131.474 kb on + strand at 131.474 kb on + strand at 131.474 kb on + strand at 131.475 kb on - strand at 131.475 kb on - strand at 131.498 kb on + strand at 131.519 kb on + strand at 131.520 kb on - strand at 131.520 kb on - strand at 131.520 kb on - strand at 131.520 kb on - strand at 131.600 kb on + strand at 131.693 kb on + strand at 131.693 kb on + strand at 131.693 kb on + strand at 131.693 kb on + strand at 131.693 kb on + strand at 131.693 kb on + strand at 131.693 kb on + strand at 131.694 kb on - strand at 131.694 kb on - strand at 131.694 kb on - strand at 131.694 kb on - strand at 131.695 kb on + strand at 131.695 kb on + strand at 131.695 kb on + strand at 131.695 kb on + strand at 131.696 kb on - strand at 131.696 kb on - strand at 131.696 kb on - strand at 131.696 kb on - strand at 131.911 kb on + strand at 131.911 kb on + strand at 131.911 kb on + strand at 131.911 kb on + strand at 131.911 kb on + strand at 131.911 kb on + strand at 131.912 kb on - strand at 131.912 kb on - strand at 131.912 kb on - strand at 131.912 kb on - strand at 131.912 kb on - strand at 131.912 kb on - strand at 131.912 kb on - strand at 131.912 kb on - strand at 131.912 kb on - strand at 131.912 kb on - strand at 131.994 kb on - strand at 132.121 kb on - strand, within AMB_RS23095 at 132.362 kb on + strand, within AMB_RS23095 at 132.392 kb on + strand, within AMB_RS23095 at 132.437 kb on + strand, within AMB_RS23095 at 132.437 kb on + strand, within AMB_RS23095 at 132.438 kb on - strand, within AMB_RS23095 at 132.438 kb on - strand, within AMB_RS23095 at 132.438 kb on - strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.562 kb on + strand, within AMB_RS23095 at 132.563 kb on - strand, within AMB_RS23095 at 132.563 kb on - strand, within AMB_RS23095 at 132.563 kb on - strand, within AMB_RS23095 at 132.563 kb on - strand, within AMB_RS23095 at 132.565 kb on - strand, within AMB_RS23095 at 132.624 kb on + strand, within AMB_RS23095 at 132.624 kb on + strand, within AMB_RS23095 at 132.624 kb on + strand, within AMB_RS23095 at 132.625 kb on - strand, within AMB_RS23095 at 132.625 kb on - strand, within AMB_RS23095 at 132.625 kb on - strand, within AMB_RS23095 at 132.625 kb on - strand, within AMB_RS23095 at 132.703 kb on + strand, within AMB_RS23095 at 132.864 kb on + strand at 132.915 kb on + strand at 132.915 kb on + strand at 132.915 kb on + strand at 132.916 kb on - strand at 132.916 kb on - strand at 132.928 kb on - strand at 132.947 kb on - strand at 133.017 kb on + strand at 133.017 kb on + strand at 133.017 kb on + strand at 133.017 kb on + strand at 133.018 kb on - strand at 133.018 kb on - strand at 133.018 kb on - strand at 133.083 kb on + strand at 133.114 kb on - strand, within AMB_RS00580 at 133.198 kb on + strand, within AMB_RS00580 at 133.369 kb on + strand, within AMB_RS00580 at 133.370 kb on - strand, within AMB_RS00580 at 133.418 kb on + strand, within AMB_RS00580 at 133.419 kb on - strand, within AMB_RS00580 at 133.430 kb on + strand, within AMB_RS00580 at 133.540 kb on + strand, within AMB_RS00580 at 133.542 kb on + strand, within AMB_RS00580 at 133.650 kb on + strand, within AMB_RS00580 at 133.650 kb on + strand, within AMB_RS00580 at 133.650 kb on + strand, within AMB_RS00580 at 133.651 kb on - strand, within AMB_RS00580 at 133.651 kb on - strand, within AMB_RS00580 at 133.651 kb on - strand, within AMB_RS00580 at 133.651 kb on - strand, within AMB_RS00580 at 133.665 kb on + strand, within AMB_RS00580
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_1 remove 130,941 - -0.8 130,947 + -0.4 130,947 + -0.2 130,947 + -0.5 130,948 - -0.4 130,982 - +1.5 131,028 + -0.1 131,091 + +0.2 131,091 + -0.2 131,091 + -0.6 131,269 + -0.7 131,269 + -0.5 131,270 - -0.3 131,270 - -0.4 131,397 - -0.2 131,404 + -0.8 131,404 + +0.9 131,404 + -0.1 131,404 + +0.0 131,404 + +0.4 131,405 - +0.0 131,405 - -0.4 131,405 - -0.6 131,405 - +0.2 131,405 - +0.2 131,405 - -1.0 131,474 + -0.0 131,474 + -0.3 131,474 + -0.2 131,474 + -0.9 131,474 + -0.1 131,474 + -0.9 131,474 + +0.3 131,474 + +0.0 131,474 + -2.4 131,474 + -0.5 131,474 + -0.6 131,475 - -0.2 131,475 - +0.3 131,498 + +0.0 131,519 + -1.7 131,520 - -0.3 131,520 - -0.1 131,520 - -0.7 131,520 - +0.7 131,600 + -0.8 131,693 + +0.6 131,693 + +0.2 131,693 + -0.5 131,693 + -0.3 131,693 + -0.3 131,693 + +0.2 131,693 + +0.4 131,694 - -0.4 131,694 - -0.4 131,694 - -0.4 131,694 - -0.2 131,695 + -0.7 131,695 + -0.4 131,695 + -0.2 131,695 + +0.2 131,696 - -1.5 131,696 - +0.5 131,696 - -2.2 131,696 - -1.3 131,911 + +0.6 131,911 + -0.5 131,911 + +0.8 131,911 + +0.5 131,911 + +1.0 131,911 + -0.8 131,912 - +0.4 131,912 - -1.2 131,912 - -2.8 131,912 - +0.5 131,912 - -1.0 131,912 - -0.0 131,912 - +0.4 131,912 - -0.2 131,912 - -0.2 131,912 - -0.4 131,994 - -0.5 132,121 - AMB_RS23095 0.20 -0.2 132,362 + AMB_RS23095 0.44 +0.7 132,392 + AMB_RS23095 0.47 -1.1 132,437 + AMB_RS23095 0.52 -0.8 132,437 + AMB_RS23095 0.52 -2.6 132,438 - AMB_RS23095 0.52 -1.0 132,438 - AMB_RS23095 0.52 +0.4 132,438 - AMB_RS23095 0.52 +0.2 132,562 + AMB_RS23095 0.64 -0.1 132,562 + AMB_RS23095 0.64 -0.0 132,562 + AMB_RS23095 0.64 -0.2 132,562 + AMB_RS23095 0.64 -0.7 132,562 + AMB_RS23095 0.64 -1.6 132,562 + AMB_RS23095 0.64 +0.1 132,562 + AMB_RS23095 0.64 -0.3 132,563 - AMB_RS23095 0.64 -1.5 132,563 - AMB_RS23095 0.64 -0.3 132,563 - AMB_RS23095 0.64 -0.2 132,563 - AMB_RS23095 0.64 +0.6 132,565 - AMB_RS23095 0.65 -1.1 132,624 + AMB_RS23095 0.71 +0.2 132,624 + AMB_RS23095 0.71 -0.7 132,624 + AMB_RS23095 0.71 -1.0 132,625 - AMB_RS23095 0.71 +0.2 132,625 - AMB_RS23095 0.71 -1.1 132,625 - AMB_RS23095 0.71 -1.6 132,625 - AMB_RS23095 0.71 -0.8 132,703 + AMB_RS23095 0.78 -2.6 132,864 + -2.0 132,915 + -0.7 132,915 + -0.5 132,915 + -1.2 132,916 - +0.2 132,916 - -0.7 132,928 - -0.2 132,947 - -0.5 133,017 + +0.3 133,017 + -0.1 133,017 + +0.8 133,017 + +0.4 133,018 - +0.4 133,018 - -1.9 133,018 - -0.5 133,083 + -1.1 133,114 - AMB_RS00580 0.12 +0.4 133,198 + AMB_RS00580 0.20 -0.3 133,369 + AMB_RS00580 0.37 -0.6 133,370 - AMB_RS00580 0.37 -0.2 133,418 + AMB_RS00580 0.42 +0.1 133,419 - AMB_RS00580 0.42 -1.3 133,430 + AMB_RS00580 0.43 +0.4 133,540 + AMB_RS00580 0.53 -0.4 133,542 + AMB_RS00580 0.54 -0.1 133,650 + AMB_RS00580 0.64 +0.1 133,650 + AMB_RS00580 0.64 -0.6 133,650 + AMB_RS00580 0.64 -0.5 133,651 - AMB_RS00580 0.64 -1.7 133,651 - AMB_RS00580 0.64 -0.0 133,651 - AMB_RS00580 0.64 -0.1 133,651 - AMB_RS00580 0.64 -0.3 133,665 + AMB_RS00580 0.66 -0.6
Or see this region's nucleotide sequence