Experiment: 30_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22620 and AMB_RS22625 are separated by 84 nucleotides AMB_RS22625 and AMB_RS22630 are separated by 9 nucleotides AMB_RS22630 and AMB_RS22635 are separated by 155 nucleotides
AMB_RS22620: AMB_RS22620 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 4,880,850 to 4,881,566
_RS22620
AMB_RS22625: AMB_RS22625 - DUF47 domain-containing protein, at 4,881,651 to 4,882,292
_RS22625
AMB_RS22630: AMB_RS22630 - inorganic phosphate transporter, at 4,882,302 to 4,883,303
_RS22630
AMB_RS22635: AMB_RS22635 - phosphate transport system regulatory protein PhoU, at 4,883,459 to 4,884,178
_RS22635
Position (kb) 4882
4883
4884 Strain fitness (log2 ratio) -2
-1
0
1 at 4881.396 kb on + strand, within AMB_RS22620 at 4881.396 kb on + strand, within AMB_RS22620 at 4881.396 kb on + strand, within AMB_RS22620 at 4881.396 kb on + strand, within AMB_RS22620 at 4881.396 kb on + strand, within AMB_RS22620 at 4881.396 kb on + strand, within AMB_RS22620 at 4881.396 kb on + strand, within AMB_RS22620 at 4881.396 kb on + strand, within AMB_RS22620 at 4881.396 kb on + strand, within AMB_RS22620 at 4881.397 kb on - strand, within AMB_RS22620 at 4881.397 kb on - strand, within AMB_RS22620 at 4881.397 kb on - strand, within AMB_RS22620 at 4881.397 kb on - strand, within AMB_RS22620 at 4881.397 kb on - strand, within AMB_RS22620 at 4881.397 kb on - strand, within AMB_RS22620 at 4881.397 kb on - strand, within AMB_RS22620 at 4881.400 kb on + strand, within AMB_RS22620 at 4881.400 kb on + strand, within AMB_RS22620 at 4881.401 kb on - strand, within AMB_RS22620 at 4882.290 kb on + strand at 4883.353 kb on + strand at 4883.378 kb on + strand at 4883.378 kb on + strand at 4883.378 kb on + strand at 4883.392 kb on - strand at 4883.432 kb on + strand at 4883.649 kb on + strand, within AMB_RS22635 at 4883.649 kb on + strand, within AMB_RS22635 at 4883.649 kb on + strand, within AMB_RS22635 at 4883.649 kb on + strand, within AMB_RS22635 at 4883.649 kb on + strand, within AMB_RS22635 at 4883.650 kb on - strand, within AMB_RS22635 at 4883.650 kb on - strand, within AMB_RS22635 at 4883.650 kb on - strand, within AMB_RS22635 at 4883.650 kb on - strand, within AMB_RS22635 at 4883.650 kb on - strand, within AMB_RS22635 at 4883.650 kb on - strand, within AMB_RS22635 at 4883.650 kb on - strand, within AMB_RS22635 at 4883.679 kb on + strand, within AMB_RS22635 at 4883.679 kb on + strand, within AMB_RS22635 at 4883.680 kb on - strand, within AMB_RS22635 at 4883.680 kb on - strand, within AMB_RS22635 at 4883.680 kb on - strand, within AMB_RS22635 at 4883.680 kb on - strand, within AMB_RS22635 at 4884.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_1 remove 4,881,396 + AMB_RS22620 0.76 -0.3 4,881,396 + AMB_RS22620 0.76 -1.4 4,881,396 + AMB_RS22620 0.76 -1.1 4,881,396 + AMB_RS22620 0.76 -0.3 4,881,396 + AMB_RS22620 0.76 -0.6 4,881,396 + AMB_RS22620 0.76 -2.6 4,881,396 + AMB_RS22620 0.76 +0.1 4,881,396 + AMB_RS22620 0.76 -0.2 4,881,396 + AMB_RS22620 0.76 +0.4 4,881,397 - AMB_RS22620 0.76 -0.5 4,881,397 - AMB_RS22620 0.76 -0.5 4,881,397 - AMB_RS22620 0.76 +0.5 4,881,397 - AMB_RS22620 0.76 -0.6 4,881,397 - AMB_RS22620 0.76 -0.7 4,881,397 - AMB_RS22620 0.76 -1.9 4,881,397 - AMB_RS22620 0.76 -0.6 4,881,400 + AMB_RS22620 0.77 -0.4 4,881,400 + AMB_RS22620 0.77 -0.5 4,881,401 - AMB_RS22620 0.77 +0.1 4,882,290 + +1.1 4,883,353 + -0.1 4,883,378 + +0.2 4,883,378 + +0.9 4,883,378 + +0.1 4,883,392 - -0.2 4,883,432 + -0.3 4,883,649 + AMB_RS22635 0.26 +0.6 4,883,649 + AMB_RS22635 0.26 -0.6 4,883,649 + AMB_RS22635 0.26 +0.0 4,883,649 + AMB_RS22635 0.26 -0.4 4,883,649 + AMB_RS22635 0.26 +1.7 4,883,650 - AMB_RS22635 0.27 -0.3 4,883,650 - AMB_RS22635 0.27 -1.3 4,883,650 - AMB_RS22635 0.27 +0.3 4,883,650 - AMB_RS22635 0.27 -1.4 4,883,650 - AMB_RS22635 0.27 -0.2 4,883,650 - AMB_RS22635 0.27 +0.5 4,883,650 - AMB_RS22635 0.27 -0.4 4,883,679 + AMB_RS22635 0.31 -0.2 4,883,679 + AMB_RS22635 0.31 +0.0 4,883,680 - AMB_RS22635 0.31 -0.9 4,883,680 - AMB_RS22635 0.31 +0.4 4,883,680 - AMB_RS22635 0.31 -1.2 4,883,680 - AMB_RS22635 0.31 -1.5 4,884,200 - -0.4
Or see this region's nucleotide sequence