Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22220

Experiment: 30_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS22210 and AMB_RS22215 are separated by 105 nucleotidesAMB_RS22215 and AMB_RS22220 are separated by 20 nucleotidesAMB_RS22220 and AMB_RS22225 are separated by 10 nucleotidesAMB_RS22225 and AMB_RS22230 overlap by 1 nucleotidesAMB_RS22230 and AMB_RS22235 are separated by 70 nucleotides AMB_RS22210: AMB_RS22210 - adenosylhomocysteinase, at 4,793,749 to 4,795,140 _RS22210 AMB_RS22215: AMB_RS22215 - cupin domain-containing protein, at 4,795,246 to 4,795,656 _RS22215 AMB_RS22220: AMB_RS22220 - phosphoenolpyruvate--protein phosphotransferase, at 4,795,677 to 4,797,467 _RS22220 AMB_RS22225: AMB_RS22225 - HPr family phosphocarrier protein, at 4,797,478 to 4,797,783 _RS22225 AMB_RS22230: AMB_RS22230 - PTS fructose transporter subunit IIA, at 4,797,783 to 4,798,190 _RS22230 AMB_RS22235: AMB_RS22235 - RNase adaptor protein RapZ, at 4,798,261 to 4,799,181 _RS22235 Position (kb) 4795 4796 4797 4798Strain fitness (log2 ratio) -2 -1 0 1at 4795.225 kb on + strandat 4795.247 kb on + strandat 4795.379 kb on + strand, within AMB_RS22215at 4795.379 kb on + strand, within AMB_RS22215at 4795.379 kb on + strand, within AMB_RS22215at 4795.379 kb on + strand, within AMB_RS22215at 4795.380 kb on - strand, within AMB_RS22215at 4795.380 kb on - strand, within AMB_RS22215at 4795.380 kb on - strand, within AMB_RS22215at 4795.380 kb on - strand, within AMB_RS22215at 4795.380 kb on - strand, within AMB_RS22215at 4795.431 kb on + strand, within AMB_RS22215at 4795.432 kb on - strand, within AMB_RS22215at 4795.433 kb on + strand, within AMB_RS22215at 4795.433 kb on + strand, within AMB_RS22215at 4795.433 kb on + strand, within AMB_RS22215at 4795.433 kb on + strand, within AMB_RS22215at 4795.433 kb on + strand, within AMB_RS22215at 4795.433 kb on + strand, within AMB_RS22215at 4795.434 kb on - strand, within AMB_RS22215at 4795.434 kb on - strand, within AMB_RS22215at 4795.434 kb on - strand, within AMB_RS22215at 4795.434 kb on - strand, within AMB_RS22215at 4795.434 kb on - strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.439 kb on + strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.440 kb on - strand, within AMB_RS22215at 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.656 kb on + strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.657 kb on - strandat 4795.973 kb on - strand, within AMB_RS22220at 4795.973 kb on - strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.017 kb on + strand, within AMB_RS22220at 4796.018 kb on - strand, within AMB_RS22220at 4796.018 kb on - strand, within AMB_RS22220at 4796.018 kb on - strand, within AMB_RS22220at 4796.018 kb on - strand, within AMB_RS22220at 4796.354 kb on + strand, within AMB_RS22220at 4796.355 kb on - strand, within AMB_RS22220at 4796.355 kb on - strand, within AMB_RS22220at 4796.455 kb on + strand, within AMB_RS22220at 4796.455 kb on + strand, within AMB_RS22220at 4796.456 kb on - strand, within AMB_RS22220at 4796.456 kb on - strand, within AMB_RS22220at 4796.456 kb on - strand, within AMB_RS22220at 4796.456 kb on - strand, within AMB_RS22220at 4796.494 kb on + strand, within AMB_RS22220at 4796.494 kb on + strand, within AMB_RS22220at 4796.494 kb on + strand, within AMB_RS22220at 4796.495 kb on - strand, within AMB_RS22220at 4796.495 kb on - strand, within AMB_RS22220at 4796.495 kb on - strand, within AMB_RS22220at 4796.574 kb on - strand, within AMB_RS22220at 4796.574 kb on - strand, within AMB_RS22220at 4796.680 kb on + strand, within AMB_RS22220at 4796.681 kb on - strand, within AMB_RS22220at 4796.681 kb on - strand, within AMB_RS22220at 4796.829 kb on - strand, within AMB_RS22220at 4797.031 kb on + strand, within AMB_RS22220at 4797.032 kb on - strand, within AMB_RS22220at 4797.032 kb on - strand, within AMB_RS22220at 4797.170 kb on - strand, within AMB_RS22220at 4797.184 kb on + strand, within AMB_RS22220at 4797.355 kb on + strandat 4797.355 kb on + strandat 4797.355 kb on + strandat 4797.355 kb on + strandat 4797.356 kb on - strandat 4797.356 kb on - strandat 4797.785 kb on - strandat 4797.785 kb on - strandat 4797.785 kb on - strandat 4797.785 kb on - strandat 4797.785 kb on - strandat 4798.333 kb on + strandat 4798.333 kb on + strandat 4798.398 kb on - strand, within AMB_RS22235

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_1
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4,795,225 + -0.2
4,795,247 + -0.0
4,795,379 + AMB_RS22215 0.32 +1.4
4,795,379 + AMB_RS22215 0.32 -1.4
4,795,379 + AMB_RS22215 0.32 -0.4
4,795,379 + AMB_RS22215 0.32 -0.1
4,795,380 - AMB_RS22215 0.33 +0.1
4,795,380 - AMB_RS22215 0.33 -0.5
4,795,380 - AMB_RS22215 0.33 +0.9
4,795,380 - AMB_RS22215 0.33 +0.9
4,795,380 - AMB_RS22215 0.33 -0.3
4,795,431 + AMB_RS22215 0.45 -0.3
4,795,432 - AMB_RS22215 0.45 -0.3
4,795,433 + AMB_RS22215 0.45 -0.3
4,795,433 + AMB_RS22215 0.45 +0.4
4,795,433 + AMB_RS22215 0.45 +0.4
4,795,433 + AMB_RS22215 0.45 -0.0
4,795,433 + AMB_RS22215 0.45 -0.2
4,795,433 + AMB_RS22215 0.45 -1.3
4,795,434 - AMB_RS22215 0.46 -1.3
4,795,434 - AMB_RS22215 0.46 -0.4
4,795,434 - AMB_RS22215 0.46 -0.4
4,795,434 - AMB_RS22215 0.46 -0.1
4,795,434 - AMB_RS22215 0.46 +0.1
4,795,439 + AMB_RS22215 0.47 -0.0
4,795,439 + AMB_RS22215 0.47 -0.0
4,795,439 + AMB_RS22215 0.47 -1.9
4,795,439 + AMB_RS22215 0.47 -0.7
4,795,439 + AMB_RS22215 0.47 -0.9
4,795,439 + AMB_RS22215 0.47 -0.2
4,795,439 + AMB_RS22215 0.47 +0.2
4,795,439 + AMB_RS22215 0.47 -0.4
4,795,439 + AMB_RS22215 0.47 -1.4
4,795,439 + AMB_RS22215 0.47 +0.4
4,795,439 + AMB_RS22215 0.47 +0.4
4,795,439 + AMB_RS22215 0.47 -0.1
4,795,440 - AMB_RS22215 0.47 -0.1
4,795,440 - AMB_RS22215 0.47 +1.0
4,795,440 - AMB_RS22215 0.47 -0.4
4,795,440 - AMB_RS22215 0.47 +0.1
4,795,440 - AMB_RS22215 0.47 +0.9
4,795,440 - AMB_RS22215 0.47 -0.3
4,795,440 - AMB_RS22215 0.47 -0.8
4,795,440 - AMB_RS22215 0.47 +0.6
4,795,440 - AMB_RS22215 0.47 +0.7
4,795,440 - AMB_RS22215 0.47 -0.1
4,795,440 - AMB_RS22215 0.47 +0.3
4,795,440 - AMB_RS22215 0.47 +0.1
4,795,440 - AMB_RS22215 0.47 -0.1
4,795,656 + -1.3
4,795,656 + +0.4
4,795,656 + +0.1
4,795,656 + -0.5
4,795,656 + -1.8
4,795,656 + -0.2
4,795,656 + +0.6
4,795,656 + -0.4
4,795,656 + +0.4
4,795,656 + +0.4
4,795,657 - -0.1
4,795,657 - +0.4
4,795,657 - +1.2
4,795,657 - +0.2
4,795,657 - +0.2
4,795,657 - +0.2
4,795,657 - -0.4
4,795,657 - +1.6
4,795,657 - +0.2
4,795,657 - -0.3
4,795,657 - -0.3
4,795,657 - +0.8
4,795,973 - AMB_RS22220 0.17 +1.1
4,795,973 - AMB_RS22220 0.17 -0.2
4,796,017 + AMB_RS22220 0.19 +0.4
4,796,017 + AMB_RS22220 0.19 -1.2
4,796,017 + AMB_RS22220 0.19 -0.5
4,796,017 + AMB_RS22220 0.19 -1.4
4,796,017 + AMB_RS22220 0.19 -0.3
4,796,017 + AMB_RS22220 0.19 +0.2
4,796,017 + AMB_RS22220 0.19 +0.1
4,796,017 + AMB_RS22220 0.19 -1.2
4,796,018 - AMB_RS22220 0.19 -0.2
4,796,018 - AMB_RS22220 0.19 +0.1
4,796,018 - AMB_RS22220 0.19 -0.2
4,796,018 - AMB_RS22220 0.19 -1.1
4,796,354 + AMB_RS22220 0.38 +0.4
4,796,355 - AMB_RS22220 0.38 +1.2
4,796,355 - AMB_RS22220 0.38 -0.2
4,796,455 + AMB_RS22220 0.43 -0.6
4,796,455 + AMB_RS22220 0.43 +0.1
4,796,456 - AMB_RS22220 0.43 +1.1
4,796,456 - AMB_RS22220 0.43 +0.4
4,796,456 - AMB_RS22220 0.43 +0.1
4,796,456 - AMB_RS22220 0.43 +0.4
4,796,494 + AMB_RS22220 0.46 +1.0
4,796,494 + AMB_RS22220 0.46 -0.4
4,796,494 + AMB_RS22220 0.46 +1.6
4,796,495 - AMB_RS22220 0.46 -0.3
4,796,495 - AMB_RS22220 0.46 -0.8
4,796,495 - AMB_RS22220 0.46 -0.2
4,796,574 - AMB_RS22220 0.50 +1.0
4,796,574 - AMB_RS22220 0.50 +0.7
4,796,680 + AMB_RS22220 0.56 +0.2
4,796,681 - AMB_RS22220 0.56 +0.4
4,796,681 - AMB_RS22220 0.56 +0.4
4,796,829 - AMB_RS22220 0.64 +0.1
4,797,031 + AMB_RS22220 0.76 +0.2
4,797,032 - AMB_RS22220 0.76 -0.6
4,797,032 - AMB_RS22220 0.76 -1.8
4,797,170 - AMB_RS22220 0.83 +0.4
4,797,184 + AMB_RS22220 0.84 -0.6
4,797,355 + -0.1
4,797,355 + -0.3
4,797,355 + -0.2
4,797,355 + -0.2
4,797,356 - +0.0
4,797,356 - +0.4
4,797,785 - -0.9
4,797,785 - -0.2
4,797,785 - +0.2
4,797,785 - -0.6
4,797,785 - +0.1
4,798,333 + -2.4
4,798,333 + -1.6
4,798,398 - AMB_RS22235 0.15 +0.7

Or see this region's nucleotide sequence