Experiment: 30_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS22055 and AMB_RS22060 are separated by 3 nucleotides AMB_RS22060 and AMB_RS22065 are separated by 383 nucleotides AMB_RS22065 and AMB_RS22070 are separated by 225 nucleotides
AMB_RS22055: AMB_RS22055 - HPP family protein, at 4,763,229 to 4,763,741
_RS22055
AMB_RS22060: AMB_RS22060 - XRE family transcriptional regulator, at 4,763,745 to 4,764,128
_RS22060
AMB_RS22065: AMB_RS22065 - class I SAM-dependent rRNA methyltransferase, at 4,764,512 to 4,765,717
_RS22065
AMB_RS22070: AMB_RS22070 - cytochrome-c oxidase, cbb3-type subunit I, at 4,765,943 to 4,767,397
_RS22070
Position (kb) 4764
4765
4766 Strain fitness (log2 ratio) -2
-1
0
1 at 4763.703 kb on + strand at 4763.703 kb on + strand at 4763.746 kb on + strand at 4763.746 kb on + strand at 4763.747 kb on - strand at 4763.791 kb on + strand, within AMB_RS22060 at 4763.792 kb on - strand, within AMB_RS22060 at 4763.792 kb on - strand, within AMB_RS22060 at 4763.792 kb on - strand, within AMB_RS22060 at 4763.792 kb on - strand, within AMB_RS22060 at 4763.827 kb on + strand, within AMB_RS22060 at 4763.828 kb on - strand, within AMB_RS22060 at 4763.830 kb on + strand, within AMB_RS22060 at 4763.968 kb on + strand, within AMB_RS22060 at 4763.968 kb on + strand, within AMB_RS22060 at 4763.969 kb on - strand, within AMB_RS22060 at 4763.969 kb on - strand, within AMB_RS22060 at 4764.043 kb on + strand, within AMB_RS22060 at 4764.159 kb on - strand at 4764.159 kb on - strand at 4764.253 kb on + strand at 4764.285 kb on - strand at 4764.337 kb on + strand at 4764.338 kb on - strand at 4764.341 kb on + strand at 4764.344 kb on + strand at 4764.362 kb on + strand at 4764.363 kb on - strand at 4764.452 kb on + strand at 4764.465 kb on + strand at 4764.538 kb on + strand at 4764.538 kb on + strand at 4764.538 kb on + strand at 4764.538 kb on + strand at 4764.538 kb on + strand at 4764.538 kb on + strand at 4764.543 kb on + strand at 4764.543 kb on + strand at 4764.544 kb on - strand at 4765.005 kb on + strand, within AMB_RS22065 at 4765.005 kb on + strand, within AMB_RS22065 at 4765.005 kb on + strand, within AMB_RS22065 at 4765.006 kb on - strand, within AMB_RS22065 at 4765.006 kb on - strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.009 kb on + strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.010 kb on - strand, within AMB_RS22065 at 4765.011 kb on + strand, within AMB_RS22065 at 4765.011 kb on + strand, within AMB_RS22065 at 4765.011 kb on + strand, within AMB_RS22065 at 4765.011 kb on + strand, within AMB_RS22065 at 4765.012 kb on - strand, within AMB_RS22065 at 4765.012 kb on - strand, within AMB_RS22065 at 4765.306 kb on + strand, within AMB_RS22065 at 4765.306 kb on + strand, within AMB_RS22065 at 4765.307 kb on - strand, within AMB_RS22065 at 4765.307 kb on - strand, within AMB_RS22065 at 4765.307 kb on - strand, within AMB_RS22065 at 4765.307 kb on - strand, within AMB_RS22065 at 4765.729 kb on + strand at 4765.730 kb on - strand at 4765.788 kb on + strand at 4765.788 kb on + strand at 4765.788 kb on + strand at 4765.788 kb on + strand at 4765.788 kb on + strand at 4765.788 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.790 kb on + strand at 4765.822 kb on + strand at 4765.822 kb on + strand at 4765.822 kb on + strand at 4765.822 kb on + strand at 4765.822 kb on + strand at 4765.822 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_1 remove 4,763,703 + -0.2 4,763,703 + +1.3 4,763,746 + -0.1 4,763,746 + -0.6 4,763,747 - -0.9 4,763,791 + AMB_RS22060 0.12 -0.4 4,763,792 - AMB_RS22060 0.12 +0.2 4,763,792 - AMB_RS22060 0.12 +0.3 4,763,792 - AMB_RS22060 0.12 -0.0 4,763,792 - AMB_RS22060 0.12 +0.1 4,763,827 + AMB_RS22060 0.21 -0.1 4,763,828 - AMB_RS22060 0.22 +0.2 4,763,830 + AMB_RS22060 0.22 -1.8 4,763,968 + AMB_RS22060 0.58 +0.2 4,763,968 + AMB_RS22060 0.58 -0.4 4,763,969 - AMB_RS22060 0.58 +1.0 4,763,969 - AMB_RS22060 0.58 -0.8 4,764,043 + AMB_RS22060 0.78 +0.4 4,764,159 - -0.6 4,764,159 - +0.0 4,764,253 + -0.3 4,764,285 - -0.5 4,764,337 + +0.0 4,764,338 - -0.1 4,764,341 + -0.3 4,764,344 + -0.2 4,764,362 + +0.0 4,764,363 - +0.2 4,764,452 + +1.7 4,764,465 + -0.5 4,764,538 + -0.9 4,764,538 + +0.5 4,764,538 + -0.3 4,764,538 + +0.6 4,764,538 + -0.3 4,764,538 + +0.0 4,764,543 + -0.4 4,764,543 + +0.1 4,764,544 - -0.6 4,765,005 + AMB_RS22065 0.41 -0.1 4,765,005 + AMB_RS22065 0.41 +0.7 4,765,005 + AMB_RS22065 0.41 -0.3 4,765,006 - AMB_RS22065 0.41 -0.4 4,765,006 - AMB_RS22065 0.41 -0.3 4,765,009 + AMB_RS22065 0.41 +0.0 4,765,009 + AMB_RS22065 0.41 -0.0 4,765,009 + AMB_RS22065 0.41 -0.4 4,765,009 + AMB_RS22065 0.41 -0.5 4,765,009 + AMB_RS22065 0.41 -0.3 4,765,009 + AMB_RS22065 0.41 -0.6 4,765,009 + AMB_RS22065 0.41 +0.5 4,765,009 + AMB_RS22065 0.41 -0.1 4,765,009 + AMB_RS22065 0.41 -0.4 4,765,009 + AMB_RS22065 0.41 -0.1 4,765,010 - AMB_RS22065 0.41 -0.6 4,765,010 - AMB_RS22065 0.41 +0.3 4,765,010 - AMB_RS22065 0.41 -0.0 4,765,010 - AMB_RS22065 0.41 +0.2 4,765,010 - AMB_RS22065 0.41 -0.8 4,765,010 - AMB_RS22065 0.41 -0.8 4,765,010 - AMB_RS22065 0.41 -0.7 4,765,010 - AMB_RS22065 0.41 -0.0 4,765,010 - AMB_RS22065 0.41 -0.4 4,765,010 - AMB_RS22065 0.41 -0.1 4,765,010 - AMB_RS22065 0.41 -0.1 4,765,010 - AMB_RS22065 0.41 -0.2 4,765,011 + AMB_RS22065 0.41 -0.3 4,765,011 + AMB_RS22065 0.41 -0.9 4,765,011 + AMB_RS22065 0.41 -0.3 4,765,011 + AMB_RS22065 0.41 -0.8 4,765,012 - AMB_RS22065 0.41 +0.2 4,765,012 - AMB_RS22065 0.41 -0.8 4,765,306 + AMB_RS22065 0.66 +0.2 4,765,306 + AMB_RS22065 0.66 +0.2 4,765,307 - AMB_RS22065 0.66 -0.3 4,765,307 - AMB_RS22065 0.66 -0.2 4,765,307 - AMB_RS22065 0.66 -0.2 4,765,307 - AMB_RS22065 0.66 -1.7 4,765,729 + -0.4 4,765,730 - +0.2 4,765,788 + -0.8 4,765,788 + -0.6 4,765,788 + -0.5 4,765,788 + -0.2 4,765,788 + -0.0 4,765,788 + +0.0 4,765,790 + -1.1 4,765,790 + +0.3 4,765,790 + -1.0 4,765,790 + -0.5 4,765,790 + -0.7 4,765,790 + -0.4 4,765,790 + -0.3 4,765,790 + -0.5 4,765,822 + -0.2 4,765,822 + -0.7 4,765,822 + +0.3 4,765,822 + -0.8 4,765,822 + -0.5 4,765,822 + -0.2
Or see this region's nucleotide sequence