Experiment: 30_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21870 and AMB_RS21875 are separated by 134 nucleotides AMB_RS21875 and AMB_RS21880 are separated by 104 nucleotides AMB_RS21880 and AMB_RS21885 overlap by 4 nucleotides AMB_RS21885 and AMB_RS21890 are separated by 117 nucleotides
AMB_RS21870: AMB_RS21870 - DUF2189 domain-containing protein, at 4,729,042 to 4,729,833
_RS21870
AMB_RS21875: AMB_RS21875 - BAX inhibitor (BI)-1/YccA family protein, at 4,729,968 to 4,730,663
_RS21875
AMB_RS21880: AMB_RS21880 - glycosyl transferase family 1, at 4,730,768 to 4,733,289
_RS21880
AMB_RS21885: AMB_RS21885 - ABC transporter, at 4,733,286 to 4,733,975
_RS21885
AMB_RS21890: AMB_RS21890 - arylesterase, at 4,734,093 to 4,734,668
_RS21890
Position (kb) 4730
4731
4732
4733
4734 Strain fitness (log2 ratio) -2
-1
0
1 at 4729.839 kb on + strand at 4730.913 kb on + strand at 4730.914 kb on - strand at 4731.284 kb on - strand, within AMB_RS21880 at 4731.289 kb on + strand, within AMB_RS21880 at 4731.289 kb on + strand, within AMB_RS21880 at 4731.290 kb on - strand, within AMB_RS21880 at 4731.490 kb on - strand, within AMB_RS21880 at 4731.490 kb on - strand, within AMB_RS21880 at 4731.741 kb on + strand, within AMB_RS21880 at 4732.376 kb on + strand, within AMB_RS21880 at 4732.376 kb on + strand, within AMB_RS21880 at 4732.376 kb on + strand, within AMB_RS21880 at 4732.376 kb on + strand, within AMB_RS21880 at 4732.451 kb on + strand, within AMB_RS21880 at 4732.452 kb on - strand, within AMB_RS21880 at 4732.452 kb on - strand, within AMB_RS21880 at 4732.452 kb on - strand, within AMB_RS21880 at 4732.823 kb on - strand, within AMB_RS21880 at 4732.823 kb on - strand, within AMB_RS21880 at 4732.952 kb on + strand, within AMB_RS21880 at 4732.952 kb on + strand, within AMB_RS21880 at 4733.327 kb on + strand at 4734.019 kb on + strand at 4734.019 kb on + strand at 4734.019 kb on + strand at 4734.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_1 remove 4,729,839 + +0.4 4,730,913 + +0.0 4,730,914 - -1.8 4,731,284 - AMB_RS21880 0.20 -1.3 4,731,289 + AMB_RS21880 0.21 -0.0 4,731,289 + AMB_RS21880 0.21 +0.2 4,731,290 - AMB_RS21880 0.21 -0.1 4,731,490 - AMB_RS21880 0.29 +0.3 4,731,490 - AMB_RS21880 0.29 -0.5 4,731,741 + AMB_RS21880 0.39 -0.4 4,732,376 + AMB_RS21880 0.64 -0.2 4,732,376 + AMB_RS21880 0.64 -0.3 4,732,376 + AMB_RS21880 0.64 -0.2 4,732,376 + AMB_RS21880 0.64 -0.3 4,732,451 + AMB_RS21880 0.67 -0.8 4,732,452 - AMB_RS21880 0.67 -1.8 4,732,452 - AMB_RS21880 0.67 -0.8 4,732,452 - AMB_RS21880 0.67 -0.9 4,732,823 - AMB_RS21880 0.81 -0.1 4,732,823 - AMB_RS21880 0.81 +1.0 4,732,952 + AMB_RS21880 0.87 +0.1 4,732,952 + AMB_RS21880 0.87 +0.7 4,733,327 + +1.4 4,734,019 + -0.4 4,734,019 + -0.4 4,734,019 + -0.2 4,734,020 - +0.2
Or see this region's nucleotide sequence