Experiment: 30_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21465 and AMB_RS21470 are separated by 217 nucleotides AMB_RS21470 and AMB_RS21475 are separated by 17 nucleotides AMB_RS21475 and AMB_RS21480 overlap by 8 nucleotides AMB_RS21480 and AMB_RS21485 overlap by 4 nucleotides
AMB_RS21465: AMB_RS21465 - MarR family transcriptional regulator, at 4,656,630 to 4,656,986
_RS21465
AMB_RS21470: AMB_RS21470 - nucleotidyltransferase family protein, at 4,657,204 to 4,657,884
_RS21470
AMB_RS21475: AMB_RS21475 - aminoglycoside phosphotransferase, at 4,657,902 to 4,658,894
_RS21475
AMB_RS21480: AMB_RS21480 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 4,658,887 to 4,659,357
_RS21480
AMB_RS21485: AMB_RS21485 - tyrosine recombinase XerC, at 4,659,354 to 4,660,298
_RS21485
Position (kb) 4657
4658
4659 Strain fitness (log2 ratio) -1
0
1 at 4657.020 kb on + strand at 4657.052 kb on + strand at 4657.052 kb on + strand at 4657.052 kb on + strand at 4657.053 kb on - strand at 4657.053 kb on - strand at 4657.076 kb on - strand at 4657.152 kb on + strand at 4657.152 kb on + strand at 4657.152 kb on + strand at 4657.152 kb on + strand at 4657.153 kb on - strand at 4657.397 kb on + strand, within AMB_RS21470 at 4659.815 kb on - strand, within AMB_RS21485
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_1 remove 4,657,020 + -0.8 4,657,052 + -0.7 4,657,052 + -0.1 4,657,052 + +0.4 4,657,053 - +0.3 4,657,053 - +0.4 4,657,076 - +0.0 4,657,152 + -0.2 4,657,152 + -0.0 4,657,152 + -0.0 4,657,152 + -1.3 4,657,153 - -0.0 4,657,397 + AMB_RS21470 0.28 -0.2 4,659,815 - AMB_RS21485 0.49 -0.5
Or see this region's nucleotide sequence