Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS21255

Experiment: 30_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS21250 and AMB_RS21255 are separated by 13 nucleotidesAMB_RS21255 and AMB_RS21260 overlap by 4 nucleotidesAMB_RS21260 and AMB_RS21265 overlap by 4 nucleotides AMB_RS21250: AMB_RS21250 - heme lyase CcmF/NrfE family subunit, at 4,613,844 to 4,615,823 _RS21250 AMB_RS21255: AMB_RS21255 - DsbE family thiol:disulfide interchange protein, at 4,615,837 to 4,616,379 _RS21255 AMB_RS21260: AMB_RS21260 - cytochrome c-type biogenesis protein CcmH, at 4,616,376 to 4,616,957 _RS21260 AMB_RS21265: AMB_RS21265 - c-type cytochrome biogenesis protein CcmI, at 4,616,954 to 4,617,787 _RS21265 Position (kb) 4615 4616 4617Strain fitness (log2 ratio) -1 0 1at 4615.852 kb on + strandat 4615.852 kb on + strandat 4615.852 kb on + strandat 4617.279 kb on - strand, within AMB_RS21265at 4617.279 kb on - strand, within AMB_RS21265at 4617.279 kb on - strand, within AMB_RS21265

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_1
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4,615,852 + -0.2
4,615,852 + -1.0
4,615,852 + +0.8
4,617,279 - AMB_RS21265 0.39 -1.2
4,617,279 - AMB_RS21265 0.39 -1.2
4,617,279 - AMB_RS21265 0.39 -1.2

Or see this region's nucleotide sequence