Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20855

Experiment: 30_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20850 and AMB_RS20855 are separated by 127 nucleotidesAMB_RS20855 and AMB_RS20860 are separated by 45 nucleotidesAMB_RS20860 and AMB_RS20865 overlap by 26 nucleotides AMB_RS20850: AMB_RS20850 - S-methyl-5-thioribose-1-phosphate isomerase, at 4,527,157 to 4,528,245 _RS20850 AMB_RS20855: AMB_RS20855 - DNA recombination protein RmuC, at 4,528,373 to 4,529,701 _RS20855 AMB_RS20860: AMB_RS20860 - 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD, at 4,529,747 to 4,530,301 _RS20860 AMB_RS20865: AMB_RS20865 - rRNA pseudouridine synthase, at 4,530,276 to 4,531,322 _RS20865 Position (kb) 4528 4529 4530Strain fitness (log2 ratio) -2 -1 0 1at 4527.403 kb on + strand, within AMB_RS20850at 4527.403 kb on + strand, within AMB_RS20850at 4527.403 kb on + strand, within AMB_RS20850at 4527.403 kb on + strand, within AMB_RS20850at 4527.514 kb on + strand, within AMB_RS20850at 4527.694 kb on + strand, within AMB_RS20850at 4527.694 kb on + strand, within AMB_RS20850at 4527.694 kb on + strand, within AMB_RS20850at 4527.694 kb on + strand, within AMB_RS20850at 4527.694 kb on + strand, within AMB_RS20850at 4527.694 kb on + strand, within AMB_RS20850at 4527.695 kb on - strand, within AMB_RS20850at 4527.695 kb on - strand, within AMB_RS20850at 4527.807 kb on + strand, within AMB_RS20850at 4527.807 kb on + strand, within AMB_RS20850at 4527.925 kb on + strand, within AMB_RS20850at 4527.925 kb on + strand, within AMB_RS20850at 4527.925 kb on + strand, within AMB_RS20850at 4527.925 kb on + strand, within AMB_RS20850at 4527.925 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.967 kb on + strand, within AMB_RS20850at 4527.968 kb on - strand, within AMB_RS20850at 4527.968 kb on - strand, within AMB_RS20850at 4527.968 kb on - strand, within AMB_RS20850at 4527.968 kb on - strand, within AMB_RS20850at 4527.968 kb on - strand, within AMB_RS20850at 4528.135 kb on + strand, within AMB_RS20850at 4528.135 kb on + strand, within AMB_RS20850at 4528.135 kb on + strand, within AMB_RS20850at 4528.243 kb on + strandat 4528.243 kb on + strandat 4528.309 kb on + strandat 4528.561 kb on - strand, within AMB_RS20855at 4528.701 kb on + strand, within AMB_RS20855at 4528.701 kb on + strand, within AMB_RS20855at 4528.701 kb on + strand, within AMB_RS20855at 4528.701 kb on + strand, within AMB_RS20855at 4528.701 kb on + strand, within AMB_RS20855at 4528.702 kb on - strand, within AMB_RS20855at 4528.753 kb on - strand, within AMB_RS20855at 4528.753 kb on - strand, within AMB_RS20855at 4528.753 kb on - strand, within AMB_RS20855at 4528.813 kb on - strand, within AMB_RS20855at 4528.813 kb on - strand, within AMB_RS20855at 4528.813 kb on - strand, within AMB_RS20855at 4528.813 kb on - strand, within AMB_RS20855at 4528.923 kb on + strand, within AMB_RS20855at 4529.052 kb on + strand, within AMB_RS20855at 4529.052 kb on + strand, within AMB_RS20855at 4529.052 kb on + strand, within AMB_RS20855at 4529.052 kb on + strand, within AMB_RS20855at 4529.053 kb on - strand, within AMB_RS20855at 4529.254 kb on + strand, within AMB_RS20855at 4529.738 kb on + strandat 4529.738 kb on + strandat 4529.738 kb on + strandat 4529.739 kb on - strandat 4529.739 kb on - strandat 4529.739 kb on - strandat 4529.739 kb on - strandat 4529.739 kb on - strandat 4529.739 kb on - strandat 4529.739 kb on - strandat 4529.739 kb on - strandat 4530.049 kb on - strand, within AMB_RS20860at 4530.329 kb on - strandat 4530.329 kb on - strandat 4530.329 kb on - strandat 4530.550 kb on + strand, within AMB_RS20865at 4530.551 kb on - strand, within AMB_RS20865at 4530.551 kb on - strand, within AMB_RS20865at 4530.590 kb on - strand, within AMB_RS20865at 4530.590 kb on - strand, within AMB_RS20865at 4530.590 kb on - strand, within AMB_RS20865at 4530.695 kb on - strand, within AMB_RS20865at 4530.695 kb on - strand, within AMB_RS20865

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_1
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4,527,403 + AMB_RS20850 0.23 +0.3
4,527,403 + AMB_RS20850 0.23 +0.4
4,527,403 + AMB_RS20850 0.23 +0.8
4,527,403 + AMB_RS20850 0.23 -0.6
4,527,514 + AMB_RS20850 0.33 -2.2
4,527,694 + AMB_RS20850 0.49 +0.6
4,527,694 + AMB_RS20850 0.49 +0.4
4,527,694 + AMB_RS20850 0.49 -0.2
4,527,694 + AMB_RS20850 0.49 -2.4
4,527,694 + AMB_RS20850 0.49 +0.6
4,527,694 + AMB_RS20850 0.49 -0.7
4,527,695 - AMB_RS20850 0.49 -0.0
4,527,695 - AMB_RS20850 0.49 -0.8
4,527,807 + AMB_RS20850 0.60 +0.6
4,527,807 + AMB_RS20850 0.60 -0.2
4,527,925 + AMB_RS20850 0.71 -0.1
4,527,925 + AMB_RS20850 0.71 +0.5
4,527,925 + AMB_RS20850 0.71 -0.4
4,527,925 + AMB_RS20850 0.71 -0.0
4,527,925 + AMB_RS20850 0.71 -1.3
4,527,967 + AMB_RS20850 0.74 +0.4
4,527,967 + AMB_RS20850 0.74 -0.6
4,527,967 + AMB_RS20850 0.74 -0.0
4,527,967 + AMB_RS20850 0.74 -0.4
4,527,967 + AMB_RS20850 0.74 -0.8
4,527,967 + AMB_RS20850 0.74 +0.3
4,527,967 + AMB_RS20850 0.74 -1.1
4,527,967 + AMB_RS20850 0.74 -0.0
4,527,967 + AMB_RS20850 0.74 +0.3
4,527,967 + AMB_RS20850 0.74 -0.3
4,527,967 + AMB_RS20850 0.74 -1.6
4,527,967 + AMB_RS20850 0.74 +0.4
4,527,967 + AMB_RS20850 0.74 +0.3
4,527,968 - AMB_RS20850 0.74 +0.1
4,527,968 - AMB_RS20850 0.74 -0.5
4,527,968 - AMB_RS20850 0.74 +0.4
4,527,968 - AMB_RS20850 0.74 +0.1
4,527,968 - AMB_RS20850 0.74 +0.1
4,528,135 + AMB_RS20850 0.90 -0.1
4,528,135 + AMB_RS20850 0.90 +0.6
4,528,135 + AMB_RS20850 0.90 -0.3
4,528,243 + +1.4
4,528,243 + -0.0
4,528,309 + +0.4
4,528,561 - AMB_RS20855 0.14 -0.2
4,528,701 + AMB_RS20855 0.25 -0.1
4,528,701 + AMB_RS20855 0.25 -0.7
4,528,701 + AMB_RS20855 0.25 -0.1
4,528,701 + AMB_RS20855 0.25 -0.2
4,528,701 + AMB_RS20855 0.25 -0.2
4,528,702 - AMB_RS20855 0.25 -0.3
4,528,753 - AMB_RS20855 0.29 -0.7
4,528,753 - AMB_RS20855 0.29 -1.0
4,528,753 - AMB_RS20855 0.29 -0.3
4,528,813 - AMB_RS20855 0.33 -0.4
4,528,813 - AMB_RS20855 0.33 -0.5
4,528,813 - AMB_RS20855 0.33 -0.6
4,528,813 - AMB_RS20855 0.33 +0.4
4,528,923 + AMB_RS20855 0.41 +0.4
4,529,052 + AMB_RS20855 0.51 -0.5
4,529,052 + AMB_RS20855 0.51 -0.2
4,529,052 + AMB_RS20855 0.51 -0.9
4,529,052 + AMB_RS20855 0.51 +1.4
4,529,053 - AMB_RS20855 0.51 -0.7
4,529,254 + AMB_RS20855 0.66 +0.1
4,529,738 + -0.2
4,529,738 + -0.8
4,529,738 + +0.0
4,529,739 - -0.2
4,529,739 - -0.5
4,529,739 - -0.2
4,529,739 - +0.0
4,529,739 - -0.0
4,529,739 - +0.1
4,529,739 - +1.1
4,529,739 - -0.5
4,530,049 - AMB_RS20860 0.54 +0.2
4,530,329 - +0.3
4,530,329 - -0.5
4,530,329 - -0.1
4,530,550 + AMB_RS20865 0.26 -0.4
4,530,551 - AMB_RS20865 0.26 -0.2
4,530,551 - AMB_RS20865 0.26 -1.1
4,530,590 - AMB_RS20865 0.30 -0.5
4,530,590 - AMB_RS20865 0.30 +1.1
4,530,590 - AMB_RS20865 0.30 -0.2
4,530,695 - AMB_RS20865 0.40 +0.2
4,530,695 - AMB_RS20865 0.40 +0.5

Or see this region's nucleotide sequence