Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19285

Experiment: 30_initial_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS19280 and AMB_RS19285 overlap by 1 nucleotidesAMB_RS19285 and AMB_RS19290 are separated by 158 nucleotides AMB_RS19280: AMB_RS19280 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 4,206,887 to 4,208,206 _RS19280 AMB_RS19285: AMB_RS19285 - GNAT family N-acetyltransferase, at 4,208,206 to 4,209,180 _RS19285 AMB_RS19290: AMB_RS19290 - tetratricopeptide repeat protein, at 4,209,339 to 4,211,114 _RS19290 Position (kb) 4208 4209 4210Strain fitness (log2 ratio) -2 -1 0 1 2at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.271 kb on + strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.272 kb on - strand, within AMB_RS19280at 4207.439 kb on + strand, within AMB_RS19280at 4207.439 kb on + strand, within AMB_RS19280at 4207.440 kb on - strand, within AMB_RS19280at 4207.440 kb on - strand, within AMB_RS19280at 4207.440 kb on - strand, within AMB_RS19280at 4207.440 kb on - strand, within AMB_RS19280at 4207.440 kb on - strand, within AMB_RS19280at 4207.471 kb on + strand, within AMB_RS19280at 4207.493 kb on + strand, within AMB_RS19280at 4207.494 kb on - strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.627 kb on + strand, within AMB_RS19280at 4207.628 kb on - strand, within AMB_RS19280at 4207.805 kb on + strand, within AMB_RS19280at 4207.806 kb on - strand, within AMB_RS19280at 4207.806 kb on - strand, within AMB_RS19280at 4207.806 kb on - strand, within AMB_RS19280at 4207.806 kb on - strand, within AMB_RS19280at 4207.809 kb on - strand, within AMB_RS19280at 4207.809 kb on - strand, within AMB_RS19280at 4207.826 kb on + strand, within AMB_RS19280at 4207.827 kb on - strand, within AMB_RS19280at 4207.938 kb on - strand, within AMB_RS19280at 4207.952 kb on + strand, within AMB_RS19280at 4207.952 kb on + strand, within AMB_RS19280at 4207.967 kb on + strand, within AMB_RS19280at 4207.985 kb on + strand, within AMB_RS19280at 4208.021 kb on + strand, within AMB_RS19280at 4208.021 kb on + strand, within AMB_RS19280at 4208.021 kb on + strand, within AMB_RS19280at 4208.308 kb on + strand, within AMB_RS19285at 4208.309 kb on - strand, within AMB_RS19285at 4208.413 kb on + strand, within AMB_RS19285at 4208.413 kb on + strand, within AMB_RS19285at 4208.413 kb on + strand, within AMB_RS19285at 4208.414 kb on - strand, within AMB_RS19285at 4208.466 kb on + strand, within AMB_RS19285at 4208.466 kb on + strand, within AMB_RS19285at 4208.466 kb on + strand, within AMB_RS19285at 4208.683 kb on + strand, within AMB_RS19285at 4208.683 kb on + strand, within AMB_RS19285at 4208.684 kb on - strand, within AMB_RS19285at 4208.822 kb on - strand, within AMB_RS19285at 4208.833 kb on + strand, within AMB_RS19285at 4208.833 kb on + strand, within AMB_RS19285at 4208.833 kb on + strand, within AMB_RS19285at 4208.834 kb on - strand, within AMB_RS19285at 4208.834 kb on - strand, within AMB_RS19285at 4208.834 kb on - strand, within AMB_RS19285at 4208.834 kb on - strand, within AMB_RS19285at 4208.834 kb on - strand, within AMB_RS19285at 4208.953 kb on + strand, within AMB_RS19285at 4208.953 kb on + strand, within AMB_RS19285at 4208.954 kb on - strand, within AMB_RS19285at 4208.956 kb on + strand, within AMB_RS19285at 4208.956 kb on + strand, within AMB_RS19285at 4208.956 kb on + strand, within AMB_RS19285at 4208.956 kb on + strand, within AMB_RS19285at 4208.956 kb on + strand, within AMB_RS19285at 4208.956 kb on + strand, within AMB_RS19285at 4208.957 kb on - strand, within AMB_RS19285at 4208.957 kb on - strand, within AMB_RS19285at 4208.957 kb on - strand, within AMB_RS19285at 4208.957 kb on - strand, within AMB_RS19285at 4208.957 kb on - strand, within AMB_RS19285at 4208.957 kb on - strand, within AMB_RS19285at 4208.971 kb on + strand, within AMB_RS19285at 4208.971 kb on + strand, within AMB_RS19285at 4208.972 kb on - strand, within AMB_RS19285at 4209.179 kb on - strandat 4209.196 kb on + strandat 4209.197 kb on - strandat 4209.340 kb on + strandat 4209.529 kb on + strand, within AMB_RS19290at 4209.530 kb on - strand, within AMB_RS19290at 4209.530 kb on - strand, within AMB_RS19290at 4209.686 kb on + strand, within AMB_RS19290at 4210.009 kb on + strand, within AMB_RS19290at 4210.042 kb on + strand, within AMB_RS19290at 4210.043 kb on - strand, within AMB_RS19290at 4210.043 kb on - strand, within AMB_RS19290at 4210.090 kb on + strand, within AMB_RS19290at 4210.090 kb on + strand, within AMB_RS19290at 4210.090 kb on + strand, within AMB_RS19290at 4210.090 kb on + strand, within AMB_RS19290at 4210.090 kb on + strand, within AMB_RS19290at 4210.091 kb on - strand, within AMB_RS19290at 4210.091 kb on - strand, within AMB_RS19290at 4210.091 kb on - strand, within AMB_RS19290

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_1
remove
4,207,271 + AMB_RS19280 0.29 +0.0
4,207,271 + AMB_RS19280 0.29 -0.2
4,207,271 + AMB_RS19280 0.29 +0.2
4,207,271 + AMB_RS19280 0.29 +1.1
4,207,271 + AMB_RS19280 0.29 -1.2
4,207,271 + AMB_RS19280 0.29 -1.7
4,207,271 + AMB_RS19280 0.29 +0.2
4,207,271 + AMB_RS19280 0.29 -0.7
4,207,271 + AMB_RS19280 0.29 -0.2
4,207,271 + AMB_RS19280 0.29 +0.1
4,207,272 - AMB_RS19280 0.29 -0.9
4,207,272 - AMB_RS19280 0.29 +0.4
4,207,272 - AMB_RS19280 0.29 +0.1
4,207,272 - AMB_RS19280 0.29 -0.2
4,207,272 - AMB_RS19280 0.29 +0.2
4,207,272 - AMB_RS19280 0.29 -1.4
4,207,272 - AMB_RS19280 0.29 -0.2
4,207,272 - AMB_RS19280 0.29 +0.7
4,207,272 - AMB_RS19280 0.29 -0.9
4,207,272 - AMB_RS19280 0.29 -0.3
4,207,439 + AMB_RS19280 0.42 +0.1
4,207,439 + AMB_RS19280 0.42 +1.2
4,207,440 - AMB_RS19280 0.42 -0.8
4,207,440 - AMB_RS19280 0.42 +0.1
4,207,440 - AMB_RS19280 0.42 +0.5
4,207,440 - AMB_RS19280 0.42 -0.0
4,207,440 - AMB_RS19280 0.42 -0.2
4,207,471 + AMB_RS19280 0.44 -0.2
4,207,493 + AMB_RS19280 0.46 -0.0
4,207,494 - AMB_RS19280 0.46 -0.6
4,207,627 + AMB_RS19280 0.56 +0.6
4,207,627 + AMB_RS19280 0.56 -1.0
4,207,627 + AMB_RS19280 0.56 +0.1
4,207,627 + AMB_RS19280 0.56 +0.4
4,207,627 + AMB_RS19280 0.56 -0.3
4,207,627 + AMB_RS19280 0.56 -0.0
4,207,627 + AMB_RS19280 0.56 -0.3
4,207,628 - AMB_RS19280 0.56 -0.4
4,207,805 + AMB_RS19280 0.70 +0.1
4,207,806 - AMB_RS19280 0.70 -0.5
4,207,806 - AMB_RS19280 0.70 +0.2
4,207,806 - AMB_RS19280 0.70 +0.5
4,207,806 - AMB_RS19280 0.70 -0.2
4,207,809 - AMB_RS19280 0.70 -0.0
4,207,809 - AMB_RS19280 0.70 -0.6
4,207,826 + AMB_RS19280 0.71 +0.7
4,207,827 - AMB_RS19280 0.71 +0.4
4,207,938 - AMB_RS19280 0.80 -0.4
4,207,952 + AMB_RS19280 0.81 +0.1
4,207,952 + AMB_RS19280 0.81 -1.9
4,207,967 + AMB_RS19280 0.82 +0.3
4,207,985 + AMB_RS19280 0.83 -0.3
4,208,021 + AMB_RS19280 0.86 -1.6
4,208,021 + AMB_RS19280 0.86 +0.3
4,208,021 + AMB_RS19280 0.86 -1.0
4,208,308 + AMB_RS19285 0.10 -0.4
4,208,309 - AMB_RS19285 0.11 -0.0
4,208,413 + AMB_RS19285 0.21 +0.9
4,208,413 + AMB_RS19285 0.21 +1.4
4,208,413 + AMB_RS19285 0.21 +0.1
4,208,414 - AMB_RS19285 0.21 -1.2
4,208,466 + AMB_RS19285 0.27 -0.4
4,208,466 + AMB_RS19285 0.27 +0.0
4,208,466 + AMB_RS19285 0.27 -0.7
4,208,683 + AMB_RS19285 0.49 -0.2
4,208,683 + AMB_RS19285 0.49 -1.3
4,208,684 - AMB_RS19285 0.49 -0.5
4,208,822 - AMB_RS19285 0.63 -0.4
4,208,833 + AMB_RS19285 0.64 +0.1
4,208,833 + AMB_RS19285 0.64 +0.1
4,208,833 + AMB_RS19285 0.64 -0.6
4,208,834 - AMB_RS19285 0.64 -0.7
4,208,834 - AMB_RS19285 0.64 +0.3
4,208,834 - AMB_RS19285 0.64 +0.1
4,208,834 - AMB_RS19285 0.64 +1.7
4,208,834 - AMB_RS19285 0.64 +0.4
4,208,953 + AMB_RS19285 0.77 -0.9
4,208,953 + AMB_RS19285 0.77 +0.0
4,208,954 - AMB_RS19285 0.77 -0.3
4,208,956 + AMB_RS19285 0.77 +0.1
4,208,956 + AMB_RS19285 0.77 -0.8
4,208,956 + AMB_RS19285 0.77 +0.6
4,208,956 + AMB_RS19285 0.77 -0.5
4,208,956 + AMB_RS19285 0.77 +0.2
4,208,956 + AMB_RS19285 0.77 -0.6
4,208,957 - AMB_RS19285 0.77 +0.1
4,208,957 - AMB_RS19285 0.77 -0.2
4,208,957 - AMB_RS19285 0.77 +0.0
4,208,957 - AMB_RS19285 0.77 -1.4
4,208,957 - AMB_RS19285 0.77 -0.4
4,208,957 - AMB_RS19285 0.77 -0.9
4,208,971 + AMB_RS19285 0.78 -0.6
4,208,971 + AMB_RS19285 0.78 -0.1
4,208,972 - AMB_RS19285 0.79 -0.2
4,209,179 - -1.2
4,209,196 + +0.5
4,209,197 - -0.6
4,209,340 + -1.1
4,209,529 + AMB_RS19290 0.11 +0.0
4,209,530 - AMB_RS19290 0.11 -0.0
4,209,530 - AMB_RS19290 0.11 -1.2
4,209,686 + AMB_RS19290 0.20 -1.1
4,210,009 + AMB_RS19290 0.38 +0.3
4,210,042 + AMB_RS19290 0.40 -0.0
4,210,043 - AMB_RS19290 0.40 -0.0
4,210,043 - AMB_RS19290 0.40 -0.0
4,210,090 + AMB_RS19290 0.42 -0.8
4,210,090 + AMB_RS19290 0.42 -0.3
4,210,090 + AMB_RS19290 0.42 +2.1
4,210,090 + AMB_RS19290 0.42 +0.4
4,210,090 + AMB_RS19290 0.42 -0.4
4,210,091 - AMB_RS19290 0.42 +2.2
4,210,091 - AMB_RS19290 0.42 -0.2
4,210,091 - AMB_RS19290 0.42 -0.9

Or see this region's nucleotide sequence