Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS16010

Experiment: 30_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS16010 and AMB_RS16015 overlap by 4 nucleotides AMB_RS16010: AMB_RS16010 - pyruvate kinase, at 3,435,376 to 3,436,803 _RS16010 AMB_RS16015: AMB_RS16015 - glycerate kinase, at 3,436,800 to 3,438,080 _RS16015 Position (kb) 3435 3436 3437Strain fitness (log2 ratio) -1 0 1at 3434.689 kb on - strandat 3434.761 kb on + strandat 3434.984 kb on + strandat 3434.985 kb on - strandat 3435.040 kb on - strandat 3435.072 kb on + strandat 3435.072 kb on + strandat 3435.116 kb on + strandat 3435.117 kb on - strandat 3435.274 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_1
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3,434,689 - -0.2
3,434,761 + +0.1
3,434,984 + -0.9
3,434,985 - -0.3
3,435,040 - +0.4
3,435,072 + -0.5
3,435,072 + -1.5
3,435,116 + -0.1
3,435,117 - -0.9
3,435,274 + -0.1

Or see this region's nucleotide sequence