Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS08460

Experiment: 30_initial_1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_initial_1
1,810,401	-				+0.5
1,810,437	+				-2.1
1,810,437	+				-1.8
1,810,437	+				-0.6
1,810,437	+				-2.2
1,810,437	+				-0.0
1,810,437	+				-1.9
1,810,437	+				-1.4
1,810,437	+				-0.5
1,810,438	-				-1.4
1,810,438	-				-0.5
1,810,438	-				-1.8
1,810,438	-				-0.2
1,810,438	-				-0.5
1,810,438	-				-0.1
1,810,438	-				-0.7
1,810,438	-				-0.4
1,810,470	+				-2.7
1,810,470	+				-1.3
1,810,471	-				-2.2
1,810,471	-				-1.6
1,810,471	-				-0.7
1,810,503	+				-1.3
1,810,503	+				-0.6
1,810,503	+				-0.0
1,810,503	+				-2.8
1,810,503	+				+0.4
1,810,504	-		AMB_RS08455	0.10	-0.4
1,810,504	-		AMB_RS08455	0.10	-0.1
1,810,504	-		AMB_RS08455	0.10	-2.2
1,810,504	-		AMB_RS08455	0.10	-0.6
1,810,504	-		AMB_RS08455	0.10	-1.5
1,810,504	-		AMB_RS08455	0.10	-1.8
1,810,504	-		AMB_RS08455	0.10	+0.7
1,810,504	-		AMB_RS08455	0.10	-0.6
1,810,504	-		AMB_RS08455	0.10	+0.4
1,810,504	-		AMB_RS08455	0.10	+0.2
1,810,599	+		AMB_RS08455	0.21	-0.4
1,810,599	+		AMB_RS08455	0.21	-0.5
1,810,599	+		AMB_RS08455	0.21	-0.0
1,810,599	+		AMB_RS08455	0.21	+0.4
1,810,599	+		AMB_RS08455	0.21	-1.6
1,810,600	-		AMB_RS08455	0.21	+0.2
1,810,600	-		AMB_RS08455	0.21	-0.9
1,810,600	-		AMB_RS08455	0.21	-0.6
1,810,600	-		AMB_RS08455	0.21	-0.9
1,810,600	-		AMB_RS08455	0.21	+0.2
1,810,600	-		AMB_RS08455	0.21	-1.5
1,810,600	-		AMB_RS08455	0.21	-1.7
1,810,600	-		AMB_RS08455	0.21	-0.7
1,810,600	-		AMB_RS08455	0.21	-3.0
1,810,600	-		AMB_RS08455	0.21	-0.4
1,810,600	-		AMB_RS08455	0.21	-0.6
1,810,600	-		AMB_RS08455	0.21	-2.8
1,810,600	-		AMB_RS08455	0.21	-0.6
1,810,600	-		AMB_RS08455	0.21	-0.6
1,810,600	-		AMB_RS08455	0.21	-0.3
1,810,854	-		AMB_RS08455	0.50	+0.1
1,810,884	+		AMB_RS08455	0.53	-0.6
1,810,885	-		AMB_RS08455	0.54	-0.7
1,810,885	-		AMB_RS08455	0.54	-1.2
1,810,885	-		AMB_RS08455	0.54	-0.6
1,810,885	-		AMB_RS08455	0.54	-0.0
1,810,885	-		AMB_RS08455	0.54	-1.3
1,811,058	+		AMB_RS08455	0.73	-1.1
1,811,058	+		AMB_RS08455	0.73	-0.1
1,811,058	+		AMB_RS08455	0.73	-0.8
1,811,058	+		AMB_RS08455	0.73	-0.5
1,811,058	+		AMB_RS08455	0.73	-0.6
1,811,059	-		AMB_RS08455	0.73	-1.1
1,811,059	-		AMB_RS08455	0.73	-0.5
1,811,059	-		AMB_RS08455	0.73	-1.7
1,811,184	+		AMB_RS08455	0.88	+0.1
1,811,200	-		AMB_RS08455	0.89	-0.6
1,811,200	-		AMB_RS08455	0.89	-0.1
1,811,380	+				-0.0
1,811,380	+				+1.0
1,811,380	+				-0.0
1,811,380	+				-0.4
1,811,380	+				+1.3
1,811,380	+				-1.6
1,811,380	+				+0.4
1,811,380	+				+0.1
1,811,381	-				-0.6
1,811,381	-				-0.4
1,811,381	-				+0.0
1,811,381	-				-1.6
1,811,381	-				-1.0
1,811,381	-				-1.1
1,811,386	+				-0.9
1,811,386	+				-0.1
1,811,387	-				-2.9
1,811,387	-				+0.5
1,811,387	-				+0.1
1,811,503	+		AMB_RS08460	0.22	-0.8
1,811,629	+		AMB_RS08460	0.35	-0.2
1,811,629	+		AMB_RS08460	0.35	+1.0
1,811,629	+		AMB_RS08460	0.35	-3.1
1,811,629	+		AMB_RS08460	0.35	-0.8
1,811,629	+		AMB_RS08460	0.35	-1.3
1,811,629	+		AMB_RS08460	0.35	-0.1
1,811,630	-		AMB_RS08460	0.35	-0.0
1,811,630	-		AMB_RS08460	0.35	-1.2
1,811,630	-		AMB_RS08460	0.35	-1.2
1,811,630	-		AMB_RS08460	0.35	-1.2
1,811,630	-		AMB_RS08460	0.35	-0.9
1,811,773	+		AMB_RS08460	0.50	-0.8
1,811,774	-		AMB_RS08460	0.50	-0.4
1,811,774	-		AMB_RS08460	0.50	-1.0
1,811,911	+		AMB_RS08460	0.65	-0.4
1,811,911	+		AMB_RS08460	0.65	-0.2
1,811,911	+		AMB_RS08460	0.65	-0.7
1,811,911	+		AMB_RS08460	0.65	-1.0
1,811,911	+		AMB_RS08460	0.65	-0.1
1,811,911	+		AMB_RS08460	0.65	-0.9
1,811,911	+		AMB_RS08460	0.65	-0.4
1,811,912	-		AMB_RS08460	0.65	-0.6
1,811,912	-		AMB_RS08460	0.65	+0.7
1,811,912	-		AMB_RS08460	0.65	+0.4
1,811,912	-		AMB_RS08460	0.65	-1.5
1,811,912	-		AMB_RS08460	0.65	-0.2
1,811,976	+		AMB_RS08460	0.72	+1.2
1,811,976	+		AMB_RS08460	0.72	+2.0
1,811,977	-		AMB_RS08460	0.72	-1.2
1,812,041	+		AMB_RS08460	0.79	+0.9
1,812,041	+		AMB_RS08460	0.79	-1.6
1,812,042	-		AMB_RS08460	0.79	-0.6
1,812,067	+		AMB_RS08460	0.81	-0.4
1,812,067	+		AMB_RS08460	0.81	-0.3
1,812,067	+		AMB_RS08460	0.81	+0.4
1,812,067	+		AMB_RS08460	0.81	-0.9
1,812,067	+		AMB_RS08460	0.81	+2.0
1,812,068	-		AMB_RS08460	0.81	-1.8
1,812,068	-		AMB_RS08460	0.81	-0.1
1,812,068	-		AMB_RS08460	0.81	-1.0
1,812,133	+		AMB_RS08460	0.88	+1.0
1,812,133	+		AMB_RS08460	0.88	+0.4
1,812,133	+		AMB_RS08460	0.88	-0.6
1,812,134	-		AMB_RS08460	0.88	-1.4
1,812,134	-		AMB_RS08460	0.88	-2.6
1,812,134	-		AMB_RS08460	0.88	-1.9
1,812,396	+		AMB_RS08465	0.20	-2.6
1,812,396	+		AMB_RS08465	0.20	-1.0
1,812,396	+		AMB_RS08465	0.20	-1.3
1,812,396	+		AMB_RS08465	0.20	-0.6
1,812,396	+		AMB_RS08465	0.20	-0.7
1,812,396	+		AMB_RS08465	0.20	-0.5
1,812,396	+		AMB_RS08465	0.20	-1.9
1,812,396	+		AMB_RS08465	0.20	-0.6
1,812,397	-		AMB_RS08465	0.21	-0.9
1,812,397	-		AMB_RS08465	0.21	+0.2
1,812,397	-		AMB_RS08465	0.21	-0.4
1,812,456	+		AMB_RS08465	0.28	-0.9
1,812,457	-		AMB_RS08465	0.28	-0.9
1,812,457	-		AMB_RS08465	0.28	-1.3
1,812,630	+		AMB_RS08465	0.51	-0.1
1,812,630	+		AMB_RS08465	0.51	-1.0
1,812,631	-		AMB_RS08465	0.51	-1.4
1,812,631	-		AMB_RS08465	0.51	-1.4
1,812,631	-		AMB_RS08465	0.51	-0.6
1,812,669	+		AMB_RS08465	0.56	-0.1
1,812,669	+		AMB_RS08465	0.56	-0.5
1,812,670	-		AMB_RS08465	0.56	-0.8
1,812,670	-		AMB_RS08465	0.56	-0.8
1,812,700	-		AMB_RS08465	0.60	-1.4
1,812,887	+		AMB_RS08465	0.85	-3.6
1,812,888	-		AMB_RS08465	0.85	-0.6
1,812,981	+				+0.1
1,812,982	-				-1.2
1,813,046	+				-1.2
1,813,046	+				-0.8
1,813,047	-				-1.0
1,813,047	-				+0.2
1,813,047	-				-0.5
1,813,047	-				-0.7