Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS07455

Experiment: 30_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS07445 and AMB_RS07450 overlap by 16 nucleotidesAMB_RS07450 and AMB_RS07455 overlap by 4 nucleotidesAMB_RS07455 and AMB_RS07460 overlap by 4 nucleotides AMB_RS07445: AMB_RS07445 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 1,611,927 to 1,612,481 _RS07445 AMB_RS07450: AMB_RS07450 - ABC transporter ATP-binding protein, at 1,612,466 to 1,613,170 _RS07450 AMB_RS07455: AMB_RS07455 - ABC transporter ATP-binding protein, at 1,613,167 to 1,613,952 _RS07455 AMB_RS07460: AMB_RS07460 - ABC transporter permease, at 1,613,949 to 1,615,805 _RS07460 Position (kb) 1613 1614Strain fitness (log2 ratio) -2 -1 0 1 2at 1612.209 kb on + strand, within AMB_RS07445at 1612.209 kb on + strand, within AMB_RS07445at 1612.293 kb on - strand, within AMB_RS07445at 1612.307 kb on + strand, within AMB_RS07445at 1612.307 kb on + strand, within AMB_RS07445at 1612.308 kb on - strand, within AMB_RS07445at 1612.308 kb on - strand, within AMB_RS07445at 1612.320 kb on + strand, within AMB_RS07445at 1612.339 kb on - strand, within AMB_RS07445at 1612.479 kb on + strandat 1612.479 kb on + strandat 1612.479 kb on + strandat 1612.479 kb on + strandat 1612.479 kb on + strandat 1612.479 kb on + strandat 1612.480 kb on - strandat 1612.480 kb on - strandat 1612.480 kb on - strandat 1612.480 kb on - strandat 1612.480 kb on - strandat 1612.480 kb on - strandat 1612.555 kb on + strand, within AMB_RS07450at 1612.555 kb on + strand, within AMB_RS07450at 1612.555 kb on + strand, within AMB_RS07450at 1612.555 kb on + strand, within AMB_RS07450at 1612.556 kb on - strand, within AMB_RS07450at 1612.556 kb on - strand, within AMB_RS07450at 1612.556 kb on - strand, within AMB_RS07450at 1612.556 kb on - strand, within AMB_RS07450at 1612.556 kb on - strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.557 kb on + strand, within AMB_RS07450at 1612.558 kb on - strand, within AMB_RS07450at 1612.558 kb on - strand, within AMB_RS07450at 1612.558 kb on - strand, within AMB_RS07450at 1612.558 kb on - strand, within AMB_RS07450at 1612.929 kb on + strand, within AMB_RS07450at 1612.929 kb on + strand, within AMB_RS07450at 1612.930 kb on - strand, within AMB_RS07450at 1612.930 kb on - strand, within AMB_RS07450at 1613.198 kb on + strandat 1613.198 kb on + strandat 1613.219 kb on + strandat 1613.219 kb on + strandat 1613.219 kb on + strandat 1613.220 kb on - strandat 1613.220 kb on - strandat 1613.504 kb on + strand, within AMB_RS07455at 1613.582 kb on + strand, within AMB_RS07455at 1613.906 kb on + strandat 1613.906 kb on + strandat 1613.906 kb on + strandat 1613.907 kb on - strandat 1614.074 kb on + strandat 1614.074 kb on + strandat 1614.075 kb on - strandat 1614.075 kb on - strandat 1614.075 kb on - strandat 1614.076 kb on + strandat 1614.077 kb on - strandat 1614.106 kb on + strandat 1614.107 kb on - strandat 1614.232 kb on + strand, within AMB_RS07460at 1614.232 kb on + strand, within AMB_RS07460at 1614.233 kb on - strand, within AMB_RS07460at 1614.233 kb on - strand, within AMB_RS07460at 1614.233 kb on - strand, within AMB_RS07460at 1614.233 kb on - strand, within AMB_RS07460at 1614.353 kb on + strand, within AMB_RS07460at 1614.354 kb on - strand, within AMB_RS07460at 1614.427 kb on + strand, within AMB_RS07460at 1614.427 kb on + strand, within AMB_RS07460at 1614.427 kb on + strand, within AMB_RS07460at 1614.427 kb on + strand, within AMB_RS07460at 1614.427 kb on + strand, within AMB_RS07460at 1614.427 kb on + strand, within AMB_RS07460at 1614.427 kb on + strand, within AMB_RS07460at 1614.428 kb on - strand, within AMB_RS07460at 1614.428 kb on - strand, within AMB_RS07460at 1614.428 kb on - strand, within AMB_RS07460at 1614.428 kb on - strand, within AMB_RS07460at 1614.428 kb on - strand, within AMB_RS07460at 1614.665 kb on - strand, within AMB_RS07460at 1614.688 kb on + strand, within AMB_RS07460at 1614.706 kb on + strand, within AMB_RS07460at 1614.707 kb on - strand, within AMB_RS07460at 1614.811 kb on + strand, within AMB_RS07460at 1614.811 kb on + strand, within AMB_RS07460at 1614.812 kb on - strand, within AMB_RS07460

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_1
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1,612,209 + AMB_RS07445 0.51 -0.8
1,612,209 + AMB_RS07445 0.51 -1.3
1,612,293 - AMB_RS07445 0.66 -0.3
1,612,307 + AMB_RS07445 0.68 +0.1
1,612,307 + AMB_RS07445 0.68 +0.5
1,612,308 - AMB_RS07445 0.69 +0.4
1,612,308 - AMB_RS07445 0.69 -1.2
1,612,320 + AMB_RS07445 0.71 -0.2
1,612,339 - AMB_RS07445 0.74 +0.6
1,612,479 + -0.4
1,612,479 + +0.4
1,612,479 + +0.1
1,612,479 + +1.0
1,612,479 + +0.8
1,612,479 + -0.4
1,612,480 - -0.5
1,612,480 - -0.1
1,612,480 - +0.4
1,612,480 - -0.5
1,612,480 - +0.3
1,612,480 - -0.1
1,612,555 + AMB_RS07450 0.13 -0.5
1,612,555 + AMB_RS07450 0.13 -0.2
1,612,555 + AMB_RS07450 0.13 +0.2
1,612,555 + AMB_RS07450 0.13 +0.2
1,612,556 - AMB_RS07450 0.13 +0.2
1,612,556 - AMB_RS07450 0.13 -1.4
1,612,556 - AMB_RS07450 0.13 -0.3
1,612,556 - AMB_RS07450 0.13 -0.2
1,612,556 - AMB_RS07450 0.13 -0.2
1,612,557 + AMB_RS07450 0.13 -1.1
1,612,557 + AMB_RS07450 0.13 -0.2
1,612,557 + AMB_RS07450 0.13 -2.3
1,612,557 + AMB_RS07450 0.13 -0.0
1,612,557 + AMB_RS07450 0.13 +0.7
1,612,557 + AMB_RS07450 0.13 +0.2
1,612,557 + AMB_RS07450 0.13 +0.1
1,612,557 + AMB_RS07450 0.13 +2.1
1,612,557 + AMB_RS07450 0.13 -0.1
1,612,558 - AMB_RS07450 0.13 +0.5
1,612,558 - AMB_RS07450 0.13 -0.6
1,612,558 - AMB_RS07450 0.13 -1.0
1,612,558 - AMB_RS07450 0.13 -0.3
1,612,929 + AMB_RS07450 0.66 -0.6
1,612,929 + AMB_RS07450 0.66 -1.0
1,612,930 - AMB_RS07450 0.66 -0.9
1,612,930 - AMB_RS07450 0.66 -0.1
1,613,198 + -0.8
1,613,198 + +0.4
1,613,219 + +0.3
1,613,219 + -1.3
1,613,219 + -0.3
1,613,220 - +0.2
1,613,220 - +0.5
1,613,504 + AMB_RS07455 0.43 -0.4
1,613,582 + AMB_RS07455 0.53 -0.1
1,613,906 + -0.1
1,613,906 + +0.0
1,613,906 + -0.4
1,613,907 - -1.0
1,614,074 + -2.0
1,614,074 + +0.5
1,614,075 - -1.0
1,614,075 - +1.0
1,614,075 - -0.6
1,614,076 + +0.5
1,614,077 - -0.5
1,614,106 + -0.2
1,614,107 - +0.4
1,614,232 + AMB_RS07460 0.15 +0.5
1,614,232 + AMB_RS07460 0.15 +0.0
1,614,233 - AMB_RS07460 0.15 +0.1
1,614,233 - AMB_RS07460 0.15 +1.4
1,614,233 - AMB_RS07460 0.15 +0.5
1,614,233 - AMB_RS07460 0.15 -0.6
1,614,353 + AMB_RS07460 0.22 +0.4
1,614,354 - AMB_RS07460 0.22 +0.0
1,614,427 + AMB_RS07460 0.26 -0.2
1,614,427 + AMB_RS07460 0.26 +0.8
1,614,427 + AMB_RS07460 0.26 +0.4
1,614,427 + AMB_RS07460 0.26 -0.5
1,614,427 + AMB_RS07460 0.26 -0.2
1,614,427 + AMB_RS07460 0.26 -0.6
1,614,427 + AMB_RS07460 0.26 -0.4
1,614,428 - AMB_RS07460 0.26 -0.4
1,614,428 - AMB_RS07460 0.26 +0.2
1,614,428 - AMB_RS07460 0.26 -0.5
1,614,428 - AMB_RS07460 0.26 -0.0
1,614,428 - AMB_RS07460 0.26 -0.3
1,614,665 - AMB_RS07460 0.39 -0.4
1,614,688 + AMB_RS07460 0.40 -0.2
1,614,706 + AMB_RS07460 0.41 -0.5
1,614,707 - AMB_RS07460 0.41 -0.2
1,614,811 + AMB_RS07460 0.46 -0.2
1,614,811 + AMB_RS07460 0.46 +1.0
1,614,812 - AMB_RS07460 0.46 +0.0

Or see this region's nucleotide sequence