Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS06430

Experiment: 30_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS06425 and AMB_RS06430 are separated by 130 nucleotidesAMB_RS06430 and AMB_RS06435 overlap by 4 nucleotides AMB_RS06425: AMB_RS06425 - asparagine synthase (glutamine-hydrolyzing), at 1,350,157 to 1,351,914 _RS06425 AMB_RS06430: AMB_RS06430 - glycosyltransferase, at 1,352,045 to 1,353,073 _RS06430 AMB_RS06435: AMB_RS06435 - glycosyltransferase, at 1,353,070 to 1,354,093 _RS06435 Position (kb) 1352 1353 1354Strain fitness (log2 ratio) -1 0 1at 1353.225 kb on - strand, within AMB_RS06435at 1353.279 kb on - strand, within AMB_RS06435at 1353.391 kb on - strand, within AMB_RS06435at 1353.663 kb on - strand, within AMB_RS06435at 1353.932 kb on - strand, within AMB_RS06435at 1353.971 kb on - strand, within AMB_RS06435at 1353.971 kb on - strand, within AMB_RS06435

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_1
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1,353,225 - AMB_RS06435 0.15 -0.0
1,353,279 - AMB_RS06435 0.20 +0.6
1,353,391 - AMB_RS06435 0.31 -0.1
1,353,663 - AMB_RS06435 0.58 +0.4
1,353,932 - AMB_RS06435 0.84 +0.0
1,353,971 - AMB_RS06435 0.88 +0.6
1,353,971 - AMB_RS06435 0.88 +0.8

Or see this region's nucleotide sequence