Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS04590

Experiment: 30_initial_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS04580 and AMB_RS04585 are separated by 44 nucleotidesAMB_RS04585 and AMB_RS04590 are separated by 4 nucleotidesAMB_RS04590 and AMB_RS04595 are separated by 218 nucleotides AMB_RS04580: AMB_RS04580 - DUF192 domain-containing protein, at 959,684 to 960,178 _RS04580 AMB_RS04585: AMB_RS04585 - tRNA-Pro, at 960,223 to 960,299 _RS04585 AMB_RS04590: AMB_RS04590 - hypothetical protein, at 960,304 to 961,458 _RS04590 AMB_RS04595: AMB_RS04595 - peptidase, at 961,677 to 962,414 _RS04595 Position (kb) 960 961 962Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 959.362 kb on - strandat 959.412 kb on + strandat 959.543 kb on + strandat 959.574 kb on + strandat 959.646 kb on - strandat 959.990 kb on - strand, within AMB_RS04580at 959.990 kb on - strand, within AMB_RS04580at 959.990 kb on - strand, within AMB_RS04580at 959.990 kb on - strand, within AMB_RS04580at 960.035 kb on + strand, within AMB_RS04580at 960.035 kb on + strand, within AMB_RS04580at 960.035 kb on + strand, within AMB_RS04580at 960.035 kb on + strand, within AMB_RS04580at 960.035 kb on + strand, within AMB_RS04580at 960.035 kb on + strand, within AMB_RS04580at 960.035 kb on + strand, within AMB_RS04580at 960.035 kb on + strand, within AMB_RS04580at 960.035 kb on + strand, within AMB_RS04580at 960.035 kb on + strand, within AMB_RS04580at 960.036 kb on - strand, within AMB_RS04580at 960.036 kb on - strand, within AMB_RS04580at 960.036 kb on - strand, within AMB_RS04580at 960.036 kb on - strand, within AMB_RS04580at 960.036 kb on - strand, within AMB_RS04580at 960.036 kb on - strand, within AMB_RS04580at 960.557 kb on + strand, within AMB_RS04590at 960.557 kb on + strand, within AMB_RS04590at 960.558 kb on - strand, within AMB_RS04590at 960.558 kb on - strand, within AMB_RS04590at 960.558 kb on - strand, within AMB_RS04590at 960.558 kb on - strand, within AMB_RS04590at 960.558 kb on - strand, within AMB_RS04590at 960.558 kb on - strand, within AMB_RS04590at 960.558 kb on - strand, within AMB_RS04590at 960.558 kb on - strand, within AMB_RS04590at 960.558 kb on - strand, within AMB_RS04590at 960.856 kb on - strand, within AMB_RS04590at 960.910 kb on + strand, within AMB_RS04590at 960.911 kb on - strand, within AMB_RS04590at 960.911 kb on - strand, within AMB_RS04590at 961.229 kb on + strand, within AMB_RS04590at 961.229 kb on + strand, within AMB_RS04590at 961.229 kb on + strand, within AMB_RS04590at 961.229 kb on + strand, within AMB_RS04590at 961.229 kb on + strand, within AMB_RS04590at 961.229 kb on + strand, within AMB_RS04590at 961.230 kb on - strand, within AMB_RS04590at 961.230 kb on - strand, within AMB_RS04590at 961.230 kb on - strand, within AMB_RS04590at 961.230 kb on - strand, within AMB_RS04590at 961.519 kb on + strandat 961.519 kb on + strandat 961.519 kb on + strandat 961.519 kb on + strandat 961.520 kb on - strandat 961.520 kb on - strandat 961.520 kb on - strandat 961.520 kb on - strandat 961.529 kb on + strandat 961.683 kb on + strandat 961.683 kb on + strandat 961.683 kb on + strandat 961.683 kb on + strandat 961.683 kb on + strandat 961.683 kb on + strandat 961.683 kb on + strandat 961.684 kb on - strandat 961.684 kb on - strandat 961.684 kb on - strandat 961.779 kb on + strand, within AMB_RS04595at 961.779 kb on + strand, within AMB_RS04595at 961.780 kb on - strand, within AMB_RS04595at 961.780 kb on - strand, within AMB_RS04595at 961.906 kb on - strand, within AMB_RS04595at 961.906 kb on - strand, within AMB_RS04595at 961.923 kb on + strand, within AMB_RS04595at 961.923 kb on + strand, within AMB_RS04595at 961.923 kb on + strand, within AMB_RS04595at 961.924 kb on - strand, within AMB_RS04595at 961.924 kb on - strand, within AMB_RS04595at 961.924 kb on - strand, within AMB_RS04595at 962.070 kb on + strand, within AMB_RS04595at 962.071 kb on - strand, within AMB_RS04595at 962.071 kb on - strand, within AMB_RS04595at 962.136 kb on + strand, within AMB_RS04595at 962.137 kb on - strand, within AMB_RS04595at 962.329 kb on - strand, within AMB_RS04595at 962.454 kb on + strandat 962.454 kb on + strandat 962.455 kb on - strandat 962.455 kb on - strandat 962.455 kb on - strandat 962.455 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_1
remove
959,362 - +0.1
959,412 + -0.2
959,543 + -0.0
959,574 + -0.1
959,646 - -1.9
959,990 - AMB_RS04580 0.62 -0.7
959,990 - AMB_RS04580 0.62 -0.4
959,990 - AMB_RS04580 0.62 -0.9
959,990 - AMB_RS04580 0.62 -0.5
960,035 + AMB_RS04580 0.71 -0.5
960,035 + AMB_RS04580 0.71 -0.5
960,035 + AMB_RS04580 0.71 -0.4
960,035 + AMB_RS04580 0.71 +0.2
960,035 + AMB_RS04580 0.71 +0.7
960,035 + AMB_RS04580 0.71 -0.2
960,035 + AMB_RS04580 0.71 -2.2
960,035 + AMB_RS04580 0.71 -0.1
960,035 + AMB_RS04580 0.71 +0.4
960,035 + AMB_RS04580 0.71 -0.2
960,036 - AMB_RS04580 0.71 -0.3
960,036 - AMB_RS04580 0.71 -0.3
960,036 - AMB_RS04580 0.71 -0.1
960,036 - AMB_RS04580 0.71 +0.3
960,036 - AMB_RS04580 0.71 -0.1
960,036 - AMB_RS04580 0.71 -0.3
960,557 + AMB_RS04590 0.22 -0.2
960,557 + AMB_RS04590 0.22 -1.2
960,558 - AMB_RS04590 0.22 -2.2
960,558 - AMB_RS04590 0.22 -0.1
960,558 - AMB_RS04590 0.22 -2.4
960,558 - AMB_RS04590 0.22 -3.2
960,558 - AMB_RS04590 0.22 -0.3
960,558 - AMB_RS04590 0.22 -0.5
960,558 - AMB_RS04590 0.22 +0.4
960,558 - AMB_RS04590 0.22 -1.2
960,558 - AMB_RS04590 0.22 -0.2
960,856 - AMB_RS04590 0.48 +0.8
960,910 + AMB_RS04590 0.52 -0.2
960,911 - AMB_RS04590 0.53 -0.8
960,911 - AMB_RS04590 0.53 -0.3
961,229 + AMB_RS04590 0.80 -0.3
961,229 + AMB_RS04590 0.80 +0.4
961,229 + AMB_RS04590 0.80 +0.2
961,229 + AMB_RS04590 0.80 -0.9
961,229 + AMB_RS04590 0.80 -2.3
961,229 + AMB_RS04590 0.80 -0.3
961,230 - AMB_RS04590 0.80 -0.4
961,230 - AMB_RS04590 0.80 -0.0
961,230 - AMB_RS04590 0.80 +0.4
961,230 - AMB_RS04590 0.80 +0.6
961,519 + -0.2
961,519 + -0.2
961,519 + +1.0
961,519 + -1.0
961,520 - +3.0
961,520 - -0.0
961,520 - -0.2
961,520 - -0.5
961,529 + -1.7
961,683 + +0.3
961,683 + -0.3
961,683 + +0.9
961,683 + +0.4
961,683 + -0.0
961,683 + +0.6
961,683 + -0.1
961,684 - -0.3
961,684 - -0.1
961,684 - -0.4
961,779 + AMB_RS04595 0.14 -0.3
961,779 + AMB_RS04595 0.14 -0.1
961,780 - AMB_RS04595 0.14 +0.9
961,780 - AMB_RS04595 0.14 -0.1
961,906 - AMB_RS04595 0.31 -0.6
961,906 - AMB_RS04595 0.31 -0.2
961,923 + AMB_RS04595 0.33 -0.1
961,923 + AMB_RS04595 0.33 +0.2
961,923 + AMB_RS04595 0.33 +0.4
961,924 - AMB_RS04595 0.33 -0.5
961,924 - AMB_RS04595 0.33 +0.1
961,924 - AMB_RS04595 0.33 +0.3
962,070 + AMB_RS04595 0.53 +0.1
962,071 - AMB_RS04595 0.53 +0.2
962,071 - AMB_RS04595 0.53 -1.1
962,136 + AMB_RS04595 0.62 +0.4
962,137 - AMB_RS04595 0.62 -2.1
962,329 - AMB_RS04595 0.88 -0.9
962,454 + -1.5
962,454 + -0.9
962,455 - -0.4
962,455 - +1.0
962,455 - -1.4
962,455 - +0.2

Or see this region's nucleotide sequence