Experiment: 30_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04565 and AMB_RS04570 overlap by 4 nucleotides AMB_RS04570 and AMB_RS04575 are separated by 105 nucleotides
AMB_RS04565: AMB_RS04565 - PAS domain-containing sensor histidine kinase, at 955,888 to 957,855
_RS04565
AMB_RS04570: AMB_RS04570 - DNA-binding response regulator, at 957,852 to 958,454
_RS04570
AMB_RS04575: AMB_RS04575 - DNA-binding response regulator, at 958,560 to 959,210
_RS04575
Position (kb) 957
958
959 Strain fitness (log2 ratio) -1
0
1
2 at 956.902 kb on + strand, within AMB_RS04565 at 956.902 kb on + strand, within AMB_RS04565 at 956.902 kb on + strand, within AMB_RS04565 at 956.902 kb on + strand, within AMB_RS04565 at 956.928 kb on + strand, within AMB_RS04565 at 956.928 kb on + strand, within AMB_RS04565 at 956.928 kb on + strand, within AMB_RS04565 at 956.929 kb on - strand, within AMB_RS04565 at 956.929 kb on - strand, within AMB_RS04565 at 956.929 kb on - strand, within AMB_RS04565 at 956.929 kb on - strand, within AMB_RS04565 at 956.929 kb on - strand, within AMB_RS04565 at 956.929 kb on - strand, within AMB_RS04565 at 956.929 kb on - strand, within AMB_RS04565 at 956.929 kb on - strand, within AMB_RS04565 at 956.929 kb on - strand, within AMB_RS04565 at 956.929 kb on - strand, within AMB_RS04565 at 956.929 kb on - strand, within AMB_RS04565 at 956.932 kb on + strand, within AMB_RS04565 at 956.933 kb on - strand, within AMB_RS04565 at 956.933 kb on - strand, within AMB_RS04565 at 956.933 kb on - strand, within AMB_RS04565 at 956.933 kb on - strand, within AMB_RS04565 at 956.933 kb on - strand, within AMB_RS04565 at 957.032 kb on - strand, within AMB_RS04565 at 957.153 kb on + strand, within AMB_RS04565 at 957.154 kb on - strand, within AMB_RS04565 at 957.235 kb on + strand, within AMB_RS04565 at 957.236 kb on - strand, within AMB_RS04565 at 957.236 kb on - strand, within AMB_RS04565 at 957.750 kb on + strand at 957.750 kb on + strand at 957.750 kb on + strand at 957.751 kb on - strand at 957.762 kb on + strand at 957.763 kb on - strand at 957.865 kb on + strand at 957.865 kb on + strand at 957.865 kb on + strand at 957.866 kb on - strand at 957.870 kb on + strand at 957.870 kb on + strand at 957.870 kb on + strand at 957.870 kb on + strand at 957.870 kb on + strand at 957.871 kb on - strand at 957.871 kb on - strand at 957.871 kb on - strand at 957.871 kb on - strand at 958.470 kb on + strand at 958.471 kb on - strand at 958.541 kb on + strand at 958.581 kb on + strand at 958.581 kb on + strand at 958.582 kb on - strand at 959.004 kb on + strand, within AMB_RS04575 at 959.042 kb on + strand, within AMB_RS04575 at 959.224 kb on + strand at 959.225 kb on - strand at 959.362 kb on - strand at 959.412 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_1 remove 956,902 + AMB_RS04565 0.52 +0.2 956,902 + AMB_RS04565 0.52 +0.5 956,902 + AMB_RS04565 0.52 +0.3 956,902 + AMB_RS04565 0.52 -0.1 956,928 + AMB_RS04565 0.53 +0.2 956,928 + AMB_RS04565 0.53 +0.5 956,928 + AMB_RS04565 0.53 +0.2 956,929 - AMB_RS04565 0.53 -0.6 956,929 - AMB_RS04565 0.53 +0.0 956,929 - AMB_RS04565 0.53 +0.2 956,929 - AMB_RS04565 0.53 +0.4 956,929 - AMB_RS04565 0.53 +0.2 956,929 - AMB_RS04565 0.53 -0.0 956,929 - AMB_RS04565 0.53 +0.6 956,929 - AMB_RS04565 0.53 +0.4 956,929 - AMB_RS04565 0.53 -1.0 956,929 - AMB_RS04565 0.53 +1.0 956,929 - AMB_RS04565 0.53 +1.0 956,932 + AMB_RS04565 0.53 +0.6 956,933 - AMB_RS04565 0.53 +1.3 956,933 - AMB_RS04565 0.53 -0.0 956,933 - AMB_RS04565 0.53 -0.0 956,933 - AMB_RS04565 0.53 -0.0 956,933 - AMB_RS04565 0.53 +0.2 957,032 - AMB_RS04565 0.58 +0.7 957,153 + AMB_RS04565 0.64 +0.2 957,154 - AMB_RS04565 0.64 -0.0 957,235 + AMB_RS04565 0.68 -0.2 957,236 - AMB_RS04565 0.68 +0.2 957,236 - AMB_RS04565 0.68 +0.1 957,750 + -1.5 957,750 + -0.0 957,750 + -1.1 957,751 - +0.2 957,762 + +0.4 957,763 - -0.2 957,865 + +0.8 957,865 + +0.5 957,865 + +0.1 957,866 - -0.7 957,870 + +0.4 957,870 + +0.4 957,870 + +0.8 957,870 + -0.6 957,870 + +1.2 957,871 - +0.3 957,871 - -0.4 957,871 - +0.3 957,871 - +0.8 958,470 + -0.2 958,471 - -0.6 958,541 + -0.6 958,581 + +0.4 958,581 + -0.9 958,582 - -0.6 959,004 + AMB_RS04575 0.68 -0.6 959,042 + AMB_RS04575 0.74 +2.7 959,224 + -0.9 959,225 - -0.8 959,362 - +0.1 959,412 + -0.2
Or see this region's nucleotide sequence