Experiment: 30_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS04485 and AMB_RS04490 are separated by 213 nucleotides AMB_RS04490 and AMB_RS04495 are separated by 23 nucleotides AMB_RS04495 and AMB_RS04500 are separated by 130 nucleotides AMB_RS04500 and AMB_RS04505 are separated by 46 nucleotides
AMB_RS04485: AMB_RS04485 - NAD(P)-dependent oxidoreductase, at 941,324 to 942,076
_RS04485
AMB_RS04490: AMB_RS04490 - CBS domain-containing protein, at 942,290 to 942,682
_RS04490
AMB_RS04495: AMB_RS04495 - cytochrome c-552 precursor, at 942,706 to 943,626
_RS04495
AMB_RS04500: AMB_RS04500 - cytochrome c-552 precursor, at 943,757 to 944,440
_RS04500
AMB_RS04505: AMB_RS04505 - YqgE/AlgH family protein, at 944,487 to 945,059
_RS04505
Position (kb) 942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 942.083 kb on + strand at 942.084 kb on - strand at 942.085 kb on + strand at 942.085 kb on + strand at 942.085 kb on + strand at 942.086 kb on - strand at 942.203 kb on + strand at 942.217 kb on + strand at 942.249 kb on + strand at 942.249 kb on + strand at 942.264 kb on + strand at 942.264 kb on + strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.265 kb on - strand at 942.266 kb on + strand at 942.266 kb on + strand at 942.266 kb on + strand at 942.266 kb on + strand at 942.266 kb on + strand at 942.266 kb on + strand at 942.267 kb on - strand at 942.267 kb on - strand at 942.267 kb on - strand at 942.267 kb on - strand at 942.267 kb on - strand at 942.317 kb on + strand at 942.317 kb on + strand at 942.317 kb on + strand at 942.317 kb on + strand at 942.318 kb on - strand at 942.318 kb on - strand at 942.318 kb on - strand at 942.318 kb on - strand at 942.320 kb on - strand at 942.320 kb on - strand at 942.320 kb on - strand at 942.320 kb on - strand at 942.394 kb on + strand, within AMB_RS04490 at 942.490 kb on + strand, within AMB_RS04490 at 942.601 kb on + strand, within AMB_RS04490 at 942.601 kb on + strand, within AMB_RS04490 at 942.602 kb on - strand, within AMB_RS04490 at 942.707 kb on + strand at 942.707 kb on + strand at 942.707 kb on + strand at 942.707 kb on + strand at 942.707 kb on + strand at 942.708 kb on - strand at 942.708 kb on - strand at 942.708 kb on - strand at 942.708 kb on - strand at 942.708 kb on - strand at 942.773 kb on + strand at 942.773 kb on + strand at 942.773 kb on + strand at 942.773 kb on + strand at 942.773 kb on + strand at 942.773 kb on + strand at 942.774 kb on - strand at 942.774 kb on - strand at 942.774 kb on - strand at 942.774 kb on - strand at 942.774 kb on - strand at 942.824 kb on + strand, within AMB_RS04495 at 942.824 kb on + strand, within AMB_RS04495 at 942.824 kb on + strand, within AMB_RS04495 at 942.824 kb on + strand, within AMB_RS04495 at 942.825 kb on - strand, within AMB_RS04495 at 943.017 kb on - strand, within AMB_RS04495 at 943.017 kb on - strand, within AMB_RS04495 at 943.121 kb on + strand, within AMB_RS04495 at 943.121 kb on + strand, within AMB_RS04495 at 943.122 kb on - strand, within AMB_RS04495 at 943.122 kb on - strand, within AMB_RS04495 at 943.122 kb on - strand, within AMB_RS04495 at 943.527 kb on - strand, within AMB_RS04495 at 943.527 kb on - strand, within AMB_RS04495 at 943.657 kb on + strand at 943.658 kb on - strand at 943.658 kb on - strand at 943.719 kb on - strand at 943.860 kb on - strand, within AMB_RS04500 at 943.860 kb on - strand, within AMB_RS04500 at 943.865 kb on + strand, within AMB_RS04500 at 943.866 kb on - strand, within AMB_RS04500 at 943.950 kb on - strand, within AMB_RS04500 at 943.979 kb on + strand, within AMB_RS04500 at 943.980 kb on - strand, within AMB_RS04500 at 944.228 kb on + strand, within AMB_RS04500 at 944.228 kb on + strand, within AMB_RS04500 at 944.229 kb on - strand, within AMB_RS04500 at 944.229 kb on - strand, within AMB_RS04500 at 944.229 kb on - strand, within AMB_RS04500 at 944.312 kb on + strand, within AMB_RS04500 at 944.312 kb on + strand, within AMB_RS04500 at 944.313 kb on - strand, within AMB_RS04500 at 944.313 kb on - strand, within AMB_RS04500 at 944.313 kb on - strand, within AMB_RS04500 at 944.475 kb on + strand at 944.475 kb on + strand at 944.476 kb on - strand at 944.476 kb on - strand at 944.492 kb on + strand at 944.493 kb on - strand at 944.493 kb on - strand at 944.493 kb on - strand at 944.505 kb on - strand at 944.580 kb on + strand, within AMB_RS04505 at 944.580 kb on + strand, within AMB_RS04505 at 944.581 kb on - strand, within AMB_RS04505 at 944.581 kb on - strand, within AMB_RS04505
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_1 remove 942,083 + -0.5 942,084 - -1.9 942,085 + -0.6 942,085 + -0.6 942,085 + +0.7 942,086 - -0.5 942,203 + -0.1 942,217 + -0.2 942,249 + -0.0 942,249 + +0.5 942,264 + +1.4 942,264 + -0.4 942,265 - -0.6 942,265 - +1.0 942,265 - +0.5 942,265 - -0.6 942,265 - -0.6 942,266 + -0.3 942,266 + -0.9 942,266 + -0.0 942,266 + +2.0 942,266 + -0.4 942,266 + +0.6 942,267 - -0.5 942,267 - -0.5 942,267 - -1.4 942,267 - -1.8 942,267 - -0.2 942,317 + -0.1 942,317 + -0.4 942,317 + -0.1 942,317 + -0.3 942,318 - +0.1 942,318 - +0.1 942,318 - -0.2 942,318 - -1.4 942,320 - +0.4 942,320 - -1.4 942,320 - -0.6 942,320 - -0.4 942,394 + AMB_RS04490 0.26 +0.8 942,490 + AMB_RS04490 0.51 +0.7 942,601 + AMB_RS04490 0.79 +0.7 942,601 + AMB_RS04490 0.79 -0.4 942,602 - AMB_RS04490 0.79 +0.2 942,707 + +0.2 942,707 + +0.1 942,707 + +0.3 942,707 + -0.8 942,707 + -0.4 942,708 - -0.3 942,708 - -0.0 942,708 - -0.0 942,708 - +0.2 942,708 - +0.2 942,773 + -0.6 942,773 + -0.2 942,773 + -1.4 942,773 + -0.2 942,773 + -0.9 942,773 + +1.2 942,774 - -0.6 942,774 - -0.4 942,774 - +0.2 942,774 - -1.1 942,774 - -0.1 942,824 + AMB_RS04495 0.13 -0.2 942,824 + AMB_RS04495 0.13 -0.1 942,824 + AMB_RS04495 0.13 +1.4 942,824 + AMB_RS04495 0.13 -1.6 942,825 - AMB_RS04495 0.13 -2.9 943,017 - AMB_RS04495 0.34 -0.5 943,017 - AMB_RS04495 0.34 -0.3 943,121 + AMB_RS04495 0.45 +0.3 943,121 + AMB_RS04495 0.45 +0.1 943,122 - AMB_RS04495 0.45 -0.2 943,122 - AMB_RS04495 0.45 +0.2 943,122 - AMB_RS04495 0.45 +0.0 943,527 - AMB_RS04495 0.89 +0.2 943,527 - AMB_RS04495 0.89 -0.9 943,657 + +0.3 943,658 - +0.7 943,658 - -0.4 943,719 - -0.6 943,860 - AMB_RS04500 0.15 -0.4 943,860 - AMB_RS04500 0.15 -1.4 943,865 + AMB_RS04500 0.16 -0.2 943,866 - AMB_RS04500 0.16 -3.3 943,950 - AMB_RS04500 0.28 +1.4 943,979 + AMB_RS04500 0.32 +0.2 943,980 - AMB_RS04500 0.33 -0.2 944,228 + AMB_RS04500 0.69 -0.7 944,228 + AMB_RS04500 0.69 -0.3 944,229 - AMB_RS04500 0.69 -0.6 944,229 - AMB_RS04500 0.69 -1.3 944,229 - AMB_RS04500 0.69 -1.6 944,312 + AMB_RS04500 0.81 -0.2 944,312 + AMB_RS04500 0.81 -0.2 944,313 - AMB_RS04500 0.81 -0.1 944,313 - AMB_RS04500 0.81 +0.4 944,313 - AMB_RS04500 0.81 -0.1 944,475 + -0.1 944,475 + +0.3 944,476 - -0.2 944,476 - -1.7 944,492 + -0.3 944,493 - -0.4 944,493 - -0.8 944,493 - -1.1 944,505 - +0.3 944,580 + AMB_RS04505 0.16 -2.6 944,580 + AMB_RS04505 0.16 +0.6 944,581 - AMB_RS04505 0.16 +0.5 944,581 - AMB_RS04505 0.16 -0.8
Or see this region's nucleotide sequence