Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03940

Experiment: 30_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03935 and AMB_RS03940 overlap by 1 nucleotidesAMB_RS03940 and AMB_RS03945 are separated by 8 nucleotides AMB_RS03935: AMB_RS03935 - glycine dehydrogenase, at 824,213 to 825,562 _RS03935 AMB_RS03940: AMB_RS03940 - glycine dehydrogenase (aminomethyl-transferring), at 825,562 to 827,061 _RS03940 AMB_RS03945: AMB_RS03945 - hypothetical protein, at 827,070 to 828,869 _RS03945 Position (kb) 825 826 827 828Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 824.588 kb on - strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.612 kb on + strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.613 kb on - strand, within AMB_RS03935at 824.709 kb on - strand, within AMB_RS03935at 825.003 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.062 kb on + strand, within AMB_RS03935at 825.063 kb on + strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.063 kb on - strand, within AMB_RS03935at 825.157 kb on + strand, within AMB_RS03935at 825.157 kb on + strand, within AMB_RS03935at 825.157 kb on + strand, within AMB_RS03935at 825.157 kb on + strand, within AMB_RS03935at 825.158 kb on - strand, within AMB_RS03935at 825.158 kb on - strand, within AMB_RS03935at 825.158 kb on - strand, within AMB_RS03935at 825.347 kb on + strand, within AMB_RS03935at 825.347 kb on + strand, within AMB_RS03935at 825.347 kb on + strand, within AMB_RS03935at 825.347 kb on + strand, within AMB_RS03935at 825.347 kb on + strand, within AMB_RS03935at 825.348 kb on - strand, within AMB_RS03935at 825.348 kb on - strand, within AMB_RS03935at 825.348 kb on - strand, within AMB_RS03935at 825.350 kb on + strand, within AMB_RS03935at 825.350 kb on + strand, within AMB_RS03935at 825.350 kb on + strand, within AMB_RS03935at 825.350 kb on + strand, within AMB_RS03935at 825.350 kb on + strand, within AMB_RS03935at 825.351 kb on - strand, within AMB_RS03935at 825.351 kb on - strand, within AMB_RS03935at 825.351 kb on - strand, within AMB_RS03935at 825.351 kb on - strand, within AMB_RS03935at 825.351 kb on - strand, within AMB_RS03935at 825.351 kb on - strand, within AMB_RS03935at 825.455 kb on + strandat 825.455 kb on + strandat 825.456 kb on - strandat 825.456 kb on - strandat 825.511 kb on + strandat 825.576 kb on + strandat 825.577 kb on - strandat 825.577 kb on - strandat 825.577 kb on - strandat 825.760 kb on + strand, within AMB_RS03940at 825.760 kb on + strand, within AMB_RS03940at 825.760 kb on + strand, within AMB_RS03940at 825.760 kb on + strand, within AMB_RS03940at 825.760 kb on + strand, within AMB_RS03940at 825.761 kb on - strand, within AMB_RS03940at 825.784 kb on + strand, within AMB_RS03940at 825.785 kb on - strand, within AMB_RS03940at 825.805 kb on + strand, within AMB_RS03940at 825.805 kb on + strand, within AMB_RS03940at 825.805 kb on + strand, within AMB_RS03940at 825.805 kb on + strand, within AMB_RS03940at 825.806 kb on - strand, within AMB_RS03940at 825.806 kb on - strand, within AMB_RS03940at 826.136 kb on - strand, within AMB_RS03940at 826.137 kb on + strand, within AMB_RS03940at 826.138 kb on - strand, within AMB_RS03940at 826.138 kb on - strand, within AMB_RS03940at 826.138 kb on - strand, within AMB_RS03940at 826.312 kb on + strand, within AMB_RS03940at 826.312 kb on + strand, within AMB_RS03940at 826.489 kb on + strand, within AMB_RS03940at 826.489 kb on + strand, within AMB_RS03940at 826.489 kb on + strand, within AMB_RS03940at 826.489 kb on + strand, within AMB_RS03940at 826.489 kb on + strand, within AMB_RS03940at 826.490 kb on - strand, within AMB_RS03940at 826.490 kb on - strand, within AMB_RS03940at 826.490 kb on - strand, within AMB_RS03940at 826.609 kb on + strand, within AMB_RS03940at 826.609 kb on + strand, within AMB_RS03940at 826.609 kb on + strand, within AMB_RS03940at 826.609 kb on + strand, within AMB_RS03940at 826.609 kb on + strand, within AMB_RS03940at 826.609 kb on + strand, within AMB_RS03940at 826.610 kb on - strand, within AMB_RS03940at 826.610 kb on - strand, within AMB_RS03940at 826.610 kb on - strand, within AMB_RS03940at 826.610 kb on - strand, within AMB_RS03940at 826.610 kb on - strand, within AMB_RS03940at 826.675 kb on + strand, within AMB_RS03940at 826.675 kb on + strand, within AMB_RS03940at 826.675 kb on + strand, within AMB_RS03940at 826.675 kb on + strand, within AMB_RS03940at 826.676 kb on - strand, within AMB_RS03940at 826.676 kb on - strand, within AMB_RS03940at 826.676 kb on - strand, within AMB_RS03940at 826.816 kb on + strand, within AMB_RS03940at 826.817 kb on - strand, within AMB_RS03940at 826.817 kb on - strand, within AMB_RS03940at 826.817 kb on - strand, within AMB_RS03940at 826.834 kb on + strand, within AMB_RS03940at 826.834 kb on + strand, within AMB_RS03940at 826.834 kb on + strand, within AMB_RS03940at 826.834 kb on + strand, within AMB_RS03940at 826.834 kb on + strand, within AMB_RS03940at 826.834 kb on + strand, within AMB_RS03940at 826.834 kb on + strand, within AMB_RS03940at 826.835 kb on - strand, within AMB_RS03940at 826.835 kb on - strand, within AMB_RS03940at 826.835 kb on - strand, within AMB_RS03940at 826.835 kb on - strand, within AMB_RS03940at 826.835 kb on - strand, within AMB_RS03940at 826.835 kb on - strand, within AMB_RS03940at 826.835 kb on - strand, within AMB_RS03940at 826.835 kb on - strand, within AMB_RS03940at 826.835 kb on - strand, within AMB_RS03940at 826.896 kb on + strand, within AMB_RS03940at 826.896 kb on + strand, within AMB_RS03940at 826.897 kb on - strand, within AMB_RS03940at 827.060 kb on - strandat 827.158 kb on + strandat 827.225 kb on + strandat 827.225 kb on + strandat 827.225 kb on + strandat 827.226 kb on - strandat 827.226 kb on - strandat 827.229 kb on + strandat 827.229 kb on + strandat 827.229 kb on + strandat 827.229 kb on + strandat 827.229 kb on + strandat 827.229 kb on + strandat 827.229 kb on + strandat 827.229 kb on + strandat 827.229 kb on + strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.230 kb on - strandat 827.664 kb on + strand, within AMB_RS03945at 827.948 kb on - strand, within AMB_RS03945at 827.979 kb on + strand, within AMB_RS03945at 827.979 kb on + strand, within AMB_RS03945at 827.980 kb on - strand, within AMB_RS03945

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_1
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824,588 - AMB_RS03935 0.28 -0.5
824,612 + AMB_RS03935 0.30 -2.8
824,612 + AMB_RS03935 0.30 -0.4
824,612 + AMB_RS03935 0.30 -0.1
824,612 + AMB_RS03935 0.30 -0.9
824,612 + AMB_RS03935 0.30 -0.4
824,612 + AMB_RS03935 0.30 -0.3
824,612 + AMB_RS03935 0.30 +1.1
824,612 + AMB_RS03935 0.30 +1.5
824,612 + AMB_RS03935 0.30 +0.2
824,612 + AMB_RS03935 0.30 -0.8
824,613 - AMB_RS03935 0.30 +0.2
824,613 - AMB_RS03935 0.30 +1.0
824,613 - AMB_RS03935 0.30 -0.2
824,613 - AMB_RS03935 0.30 -0.6
824,613 - AMB_RS03935 0.30 +0.2
824,613 - AMB_RS03935 0.30 -0.3
824,613 - AMB_RS03935 0.30 -0.3
824,613 - AMB_RS03935 0.30 -0.3
824,613 - AMB_RS03935 0.30 -0.3
824,613 - AMB_RS03935 0.30 -0.8
824,709 - AMB_RS03935 0.37 -1.2
825,003 + AMB_RS03935 0.59 +0.1
825,062 + AMB_RS03935 0.63 -0.7
825,062 + AMB_RS03935 0.63 -1.0
825,062 + AMB_RS03935 0.63 +0.1
825,062 + AMB_RS03935 0.63 +0.3
825,062 + AMB_RS03935 0.63 -1.6
825,062 + AMB_RS03935 0.63 -1.1
825,062 + AMB_RS03935 0.63 +1.1
825,062 + AMB_RS03935 0.63 -0.7
825,062 + AMB_RS03935 0.63 -1.0
825,062 + AMB_RS03935 0.63 +0.8
825,062 + AMB_RS03935 0.63 -0.5
825,062 + AMB_RS03935 0.63 -1.2
825,062 + AMB_RS03935 0.63 +0.5
825,062 + AMB_RS03935 0.63 +0.0
825,062 + AMB_RS03935 0.63 +0.0
825,062 + AMB_RS03935 0.63 -0.4
825,062 + AMB_RS03935 0.63 -1.0
825,063 + AMB_RS03935 0.63 -0.0
825,063 - AMB_RS03935 0.63 +0.3
825,063 - AMB_RS03935 0.63 -1.3
825,063 - AMB_RS03935 0.63 -0.0
825,063 - AMB_RS03935 0.63 -0.7
825,063 - AMB_RS03935 0.63 -0.6
825,063 - AMB_RS03935 0.63 -0.2
825,063 - AMB_RS03935 0.63 -1.9
825,063 - AMB_RS03935 0.63 -1.1
825,063 - AMB_RS03935 0.63 -0.4
825,063 - AMB_RS03935 0.63 -0.9
825,157 + AMB_RS03935 0.70 -0.9
825,157 + AMB_RS03935 0.70 +0.1
825,157 + AMB_RS03935 0.70 -0.6
825,157 + AMB_RS03935 0.70 -0.5
825,158 - AMB_RS03935 0.70 +0.2
825,158 - AMB_RS03935 0.70 +1.5
825,158 - AMB_RS03935 0.70 +0.8
825,347 + AMB_RS03935 0.84 -1.2
825,347 + AMB_RS03935 0.84 -0.1
825,347 + AMB_RS03935 0.84 -0.0
825,347 + AMB_RS03935 0.84 -0.1
825,347 + AMB_RS03935 0.84 -0.1
825,348 - AMB_RS03935 0.84 -0.4
825,348 - AMB_RS03935 0.84 -0.1
825,348 - AMB_RS03935 0.84 -2.4
825,350 + AMB_RS03935 0.84 -0.2
825,350 + AMB_RS03935 0.84 -0.2
825,350 + AMB_RS03935 0.84 -0.5
825,350 + AMB_RS03935 0.84 +0.4
825,350 + AMB_RS03935 0.84 +1.2
825,351 - AMB_RS03935 0.84 -1.2
825,351 - AMB_RS03935 0.84 -0.3
825,351 - AMB_RS03935 0.84 -1.2
825,351 - AMB_RS03935 0.84 -0.6
825,351 - AMB_RS03935 0.84 -0.5
825,351 - AMB_RS03935 0.84 -0.7
825,455 + -0.4
825,455 + +0.5
825,456 - -0.8
825,456 - -1.4
825,511 + -0.4
825,576 + +0.3
825,577 - +0.9
825,577 - +0.6
825,577 - -0.4
825,760 + AMB_RS03940 0.13 +0.0
825,760 + AMB_RS03940 0.13 +0.0
825,760 + AMB_RS03940 0.13 +0.5
825,760 + AMB_RS03940 0.13 -0.3
825,760 + AMB_RS03940 0.13 +0.7
825,761 - AMB_RS03940 0.13 +1.8
825,784 + AMB_RS03940 0.15 -0.4
825,785 - AMB_RS03940 0.15 -0.6
825,805 + AMB_RS03940 0.16 -0.4
825,805 + AMB_RS03940 0.16 -0.2
825,805 + AMB_RS03940 0.16 -1.4
825,805 + AMB_RS03940 0.16 -0.7
825,806 - AMB_RS03940 0.16 -0.9
825,806 - AMB_RS03940 0.16 +1.7
826,136 - AMB_RS03940 0.38 -0.6
826,137 + AMB_RS03940 0.38 -1.2
826,138 - AMB_RS03940 0.38 -0.3
826,138 - AMB_RS03940 0.38 -0.7
826,138 - AMB_RS03940 0.38 -0.4
826,312 + AMB_RS03940 0.50 -0.3
826,312 + AMB_RS03940 0.50 -0.2
826,489 + AMB_RS03940 0.62 +0.8
826,489 + AMB_RS03940 0.62 -0.3
826,489 + AMB_RS03940 0.62 +0.9
826,489 + AMB_RS03940 0.62 -2.4
826,489 + AMB_RS03940 0.62 -0.5
826,490 - AMB_RS03940 0.62 +0.4
826,490 - AMB_RS03940 0.62 -0.4
826,490 - AMB_RS03940 0.62 +0.0
826,609 + AMB_RS03940 0.70 +0.0
826,609 + AMB_RS03940 0.70 +0.7
826,609 + AMB_RS03940 0.70 -0.8
826,609 + AMB_RS03940 0.70 -1.9
826,609 + AMB_RS03940 0.70 -0.7
826,609 + AMB_RS03940 0.70 -0.0
826,610 - AMB_RS03940 0.70 +0.4
826,610 - AMB_RS03940 0.70 -0.4
826,610 - AMB_RS03940 0.70 -0.2
826,610 - AMB_RS03940 0.70 -1.3
826,610 - AMB_RS03940 0.70 -0.6
826,675 + AMB_RS03940 0.74 -2.7
826,675 + AMB_RS03940 0.74 +1.0
826,675 + AMB_RS03940 0.74 -0.7
826,675 + AMB_RS03940 0.74 -0.1
826,676 - AMB_RS03940 0.74 +0.3
826,676 - AMB_RS03940 0.74 -0.4
826,676 - AMB_RS03940 0.74 +0.5
826,816 + AMB_RS03940 0.84 -1.0
826,817 - AMB_RS03940 0.84 -0.3
826,817 - AMB_RS03940 0.84 -0.1
826,817 - AMB_RS03940 0.84 -0.7
826,834 + AMB_RS03940 0.85 -0.3
826,834 + AMB_RS03940 0.85 -0.1
826,834 + AMB_RS03940 0.85 -0.2
826,834 + AMB_RS03940 0.85 +1.6
826,834 + AMB_RS03940 0.85 +2.0
826,834 + AMB_RS03940 0.85 -0.6
826,834 + AMB_RS03940 0.85 +0.9
826,835 - AMB_RS03940 0.85 -0.3
826,835 - AMB_RS03940 0.85 -0.9
826,835 - AMB_RS03940 0.85 -0.2
826,835 - AMB_RS03940 0.85 +0.2
826,835 - AMB_RS03940 0.85 +0.1
826,835 - AMB_RS03940 0.85 -0.4
826,835 - AMB_RS03940 0.85 -1.0
826,835 - AMB_RS03940 0.85 +0.0
826,835 - AMB_RS03940 0.85 -0.9
826,896 + AMB_RS03940 0.89 +0.0
826,896 + AMB_RS03940 0.89 +1.7
826,897 - AMB_RS03940 0.89 -1.0
827,060 - -0.4
827,158 + +0.0
827,225 + +0.6
827,225 + -1.4
827,225 + +0.0
827,226 - +0.2
827,226 - +0.4
827,229 + -0.6
827,229 + +1.2
827,229 + +0.1
827,229 + +0.4
827,229 + +2.4
827,229 + -1.8
827,229 + -0.4
827,229 + -0.4
827,229 + +0.1
827,230 - -1.2
827,230 - +0.2
827,230 - +1.2
827,230 - +0.8
827,230 - +0.1
827,230 - -0.5
827,230 - -0.0
827,230 - -0.7
827,230 - +0.2
827,230 - -0.1
827,230 - -0.8
827,230 - +0.7
827,230 - -0.3
827,230 - -0.7
827,230 - -0.5
827,230 - -0.2
827,230 - -0.1
827,230 - +0.2
827,230 - -0.5
827,230 - +0.6
827,230 - -0.9
827,230 - -0.1
827,664 + AMB_RS03945 0.33 -1.4
827,948 - AMB_RS03945 0.49 -0.2
827,979 + AMB_RS03945 0.51 -1.1
827,979 + AMB_RS03945 0.51 -0.6
827,980 - AMB_RS03945 0.51 +0.5

Or see this region's nucleotide sequence