Experiment: 30_initial_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03435 and AMB_RS03440 are separated by 284 nucleotides AMB_RS03440 and AMB_RS03445 are separated by 140 nucleotides AMB_RS03445 and AMB_RS03450 overlap by 31 nucleotides AMB_RS03450 and AMB_RS03455 are separated by 203 nucleotides
AMB_RS03435: AMB_RS03435 - PAS domain-containing sensor histidine kinase, at 717,925 to 719,685
_RS03435
AMB_RS03440: AMB_RS03440 - hypothetical protein, at 719,970 to 720,536
_RS03440
AMB_RS03445: AMB_RS03445 - hypothetical protein, at 720,677 to 720,904
_RS03445
AMB_RS03450: AMB_RS03450 - DUF4239 domain-containing protein, at 720,874 to 721,680
_RS03450
AMB_RS03455: AMB_RS03455 - hypothetical protein, at 721,884 to 722,300
_RS03455
Position (kb) 720
721 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 719.699 kb on + strand at 719.763 kb on + strand at 719.763 kb on + strand at 719.763 kb on + strand at 719.764 kb on - strand at 719.764 kb on - strand at 719.764 kb on - strand at 720.514 kb on - strand at 720.514 kb on - strand at 720.544 kb on + strand at 720.597 kb on + strand at 720.597 kb on + strand at 720.599 kb on + strand at 720.599 kb on + strand at 720.599 kb on + strand at 720.599 kb on + strand at 720.599 kb on + strand at 720.599 kb on + strand at 721.156 kb on + strand, within AMB_RS03450 at 721.156 kb on + strand, within AMB_RS03450 at 721.343 kb on + strand, within AMB_RS03450 at 721.344 kb on - strand, within AMB_RS03450 at 721.344 kb on - strand, within AMB_RS03450 at 721.436 kb on + strand, within AMB_RS03450 at 721.436 kb on + strand, within AMB_RS03450 at 721.582 kb on + strand, within AMB_RS03450 at 721.582 kb on + strand, within AMB_RS03450 at 721.582 kb on + strand, within AMB_RS03450 at 721.582 kb on + strand, within AMB_RS03450 at 721.582 kb on + strand, within AMB_RS03450 at 721.582 kb on + strand, within AMB_RS03450 at 721.583 kb on - strand, within AMB_RS03450 at 721.583 kb on - strand, within AMB_RS03450 at 721.649 kb on + strand at 721.649 kb on + strand at 721.649 kb on + strand at 721.650 kb on - strand at 721.650 kb on - strand at 721.650 kb on - strand at 721.658 kb on + strand at 721.658 kb on + strand at 721.658 kb on + strand at 721.658 kb on + strand at 721.658 kb on + strand at 721.658 kb on + strand at 721.658 kb on + strand at 721.659 kb on - strand at 721.659 kb on - strand at 721.659 kb on - strand at 721.659 kb on - strand at 721.659 kb on - strand at 721.659 kb on - strand at 721.659 kb on - strand at 721.680 kb on + strand at 721.681 kb on - strand at 721.706 kb on + strand at 721.706 kb on + strand at 721.707 kb on - strand at 721.742 kb on - strand at 721.839 kb on + strand at 721.839 kb on + strand at 721.845 kb on + strand at 721.865 kb on + strand at 721.865 kb on + strand at 721.866 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_initial_1 remove 719,699 + -1.3 719,763 + -0.0 719,763 + -1.1 719,763 + -2.9 719,764 - -0.3 719,764 - -0.3 719,764 - +0.4 720,514 - +0.2 720,514 - +1.4 720,544 + -0.9 720,597 + -1.0 720,597 + -0.3 720,599 + -0.4 720,599 + +0.1 720,599 + -0.3 720,599 + -0.6 720,599 + +1.0 720,599 + -0.0 721,156 + AMB_RS03450 0.35 +0.1 721,156 + AMB_RS03450 0.35 +0.7 721,343 + AMB_RS03450 0.58 -1.0 721,344 - AMB_RS03450 0.58 -0.1 721,344 - AMB_RS03450 0.58 -1.9 721,436 + AMB_RS03450 0.70 -1.1 721,436 + AMB_RS03450 0.70 -2.2 721,582 + AMB_RS03450 0.88 +1.0 721,582 + AMB_RS03450 0.88 +0.4 721,582 + AMB_RS03450 0.88 +0.2 721,582 + AMB_RS03450 0.88 -0.3 721,582 + AMB_RS03450 0.88 +0.4 721,582 + AMB_RS03450 0.88 +0.1 721,583 - AMB_RS03450 0.88 -0.1 721,583 - AMB_RS03450 0.88 -0.6 721,649 + -1.6 721,649 + -0.2 721,649 + -0.1 721,650 - +1.4 721,650 - -1.0 721,650 - +0.3 721,658 + -0.5 721,658 + -0.3 721,658 + -0.2 721,658 + +0.2 721,658 + -0.6 721,658 + -0.9 721,658 + +0.1 721,659 - -0.5 721,659 - +0.2 721,659 - -0.1 721,659 - -1.4 721,659 - -0.3 721,659 - -0.1 721,659 - -2.0 721,680 + +0.9 721,681 - -0.1 721,706 + -0.3 721,706 + +0.1 721,707 - -0.0 721,742 - +0.3 721,839 + +1.8 721,839 + +2.8 721,845 + -0.2 721,865 + -0.5 721,865 + -0.6 721,866 - -0.3
Or see this region's nucleotide sequence