Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00815

Experiment: 30_initial_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00805 and AMB_RS00810 overlap by 4 nucleotidesAMB_RS00810 and AMB_RS00815 are separated by 132 nucleotidesAMB_RS00815 and AMB_RS00820 overlap by 1 nucleotidesAMB_RS00820 and AMB_RS00825 are separated by 36 nucleotides AMB_RS00805: AMB_RS00805 - haloacid dehalogenase, at 182,256 to 182,888 _RS00805 AMB_RS00810: AMB_RS00810 - hypothetical protein, at 182,885 to 183,511 _RS00810 AMB_RS00815: AMB_RS00815 - hypothetical protein, at 183,644 to 184,747 _RS00815 AMB_RS00820: AMB_RS00820 - GDP-L-fucose synthase, at 184,747 to 185,691 _RS00820 AMB_RS00825: AMB_RS00825 - NAD(+) kinase, at 185,728 to 186,495 _RS00825 Position (kb) 183 184 185Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 182.651 kb on + strand, within AMB_RS00805at 182.651 kb on + strand, within AMB_RS00805at 182.651 kb on + strand, within AMB_RS00805at 182.651 kb on + strand, within AMB_RS00805at 182.651 kb on + strand, within AMB_RS00805at 182.651 kb on + strand, within AMB_RS00805at 182.652 kb on - strand, within AMB_RS00805at 182.652 kb on - strand, within AMB_RS00805at 182.652 kb on - strand, within AMB_RS00805at 182.652 kb on - strand, within AMB_RS00805at 182.652 kb on - strand, within AMB_RS00805at 182.652 kb on - strand, within AMB_RS00805at 182.653 kb on + strand, within AMB_RS00805at 182.653 kb on + strand, within AMB_RS00805at 182.653 kb on + strand, within AMB_RS00805at 182.653 kb on + strand, within AMB_RS00805at 182.653 kb on + strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.654 kb on - strand, within AMB_RS00805at 182.719 kb on + strand, within AMB_RS00805at 182.719 kb on + strand, within AMB_RS00805at 182.719 kb on + strand, within AMB_RS00805at 182.719 kb on + strand, within AMB_RS00805at 182.719 kb on + strand, within AMB_RS00805at 182.719 kb on + strand, within AMB_RS00805at 182.720 kb on - strand, within AMB_RS00805at 182.720 kb on - strand, within AMB_RS00805at 182.720 kb on - strand, within AMB_RS00805at 182.720 kb on - strand, within AMB_RS00805at 183.111 kb on + strand, within AMB_RS00810at 183.111 kb on + strand, within AMB_RS00810at 183.112 kb on - strand, within AMB_RS00810at 183.112 kb on - strand, within AMB_RS00810at 183.112 kb on - strand, within AMB_RS00810at 183.112 kb on - strand, within AMB_RS00810at 183.112 kb on - strand, within AMB_RS00810at 183.112 kb on - strand, within AMB_RS00810at 183.114 kb on + strand, within AMB_RS00810at 183.115 kb on - strand, within AMB_RS00810at 183.115 kb on - strand, within AMB_RS00810at 183.115 kb on - strand, within AMB_RS00810at 183.115 kb on - strand, within AMB_RS00810at 183.174 kb on + strand, within AMB_RS00810at 183.174 kb on + strand, within AMB_RS00810at 183.175 kb on - strand, within AMB_RS00810at 183.175 kb on - strand, within AMB_RS00810at 183.175 kb on - strand, within AMB_RS00810at 183.213 kb on + strand, within AMB_RS00810at 183.213 kb on + strand, within AMB_RS00810at 183.213 kb on + strand, within AMB_RS00810at 183.214 kb on - strand, within AMB_RS00810at 183.214 kb on - strand, within AMB_RS00810at 183.538 kb on + strandat 183.538 kb on + strandat 183.538 kb on + strandat 183.539 kb on - strandat 183.539 kb on - strandat 183.631 kb on + strandat 183.632 kb on - strandat 183.632 kb on - strandat 183.632 kb on - strandat 183.632 kb on - strandat 183.632 kb on - strandat 183.632 kb on - strandat 183.658 kb on + strandat 183.658 kb on + strandat 183.658 kb on + strandat 183.715 kb on + strandat 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.761 kb on + strand, within AMB_RS00815at 183.762 kb on - strand, within AMB_RS00815at 183.762 kb on - strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.133 kb on + strand, within AMB_RS00815at 184.134 kb on - strand, within AMB_RS00815at 184.134 kb on - strand, within AMB_RS00815at 184.134 kb on - strand, within AMB_RS00815at 184.338 kb on - strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.346 kb on + strand, within AMB_RS00815at 184.347 kb on - strand, within AMB_RS00815at 184.410 kb on - strand, within AMB_RS00815at 184.424 kb on + strand, within AMB_RS00815at 184.424 kb on + strand, within AMB_RS00815at 184.424 kb on + strand, within AMB_RS00815at 184.424 kb on + strand, within AMB_RS00815at 184.425 kb on - strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.454 kb on + strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.455 kb on - strand, within AMB_RS00815at 184.456 kb on + strand, within AMB_RS00815at 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.715 kb on + strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.716 kb on - strandat 184.719 kb on + strandat 184.719 kb on + strandat 184.720 kb on - strandat 184.720 kb on - strandat 184.720 kb on - strandat 184.720 kb on - strandat 184.720 kb on - strandat 184.759 kb on + strandat 184.759 kb on + strandat 184.759 kb on + strandat 185.092 kb on + strand, within AMB_RS00820at 185.093 kb on - strand, within AMB_RS00820at 185.103 kb on - strand, within AMB_RS00820at 185.278 kb on + strand, within AMB_RS00820at 185.278 kb on + strand, within AMB_RS00820at 185.278 kb on + strand, within AMB_RS00820at 185.278 kb on + strand, within AMB_RS00820at 185.279 kb on - strand, within AMB_RS00820at 185.279 kb on - strand, within AMB_RS00820at 185.279 kb on - strand, within AMB_RS00820at 185.668 kb on + strandat 185.668 kb on + strandat 185.669 kb on - strandat 185.689 kb on + strandat 185.689 kb on + strandat 185.689 kb on + strandat 185.689 kb on + strandat 185.689 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_initial_1
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182,651 + AMB_RS00805 0.62 -1.2
182,651 + AMB_RS00805 0.62 -0.7
182,651 + AMB_RS00805 0.62 -0.6
182,651 + AMB_RS00805 0.62 -2.2
182,651 + AMB_RS00805 0.62 -0.6
182,651 + AMB_RS00805 0.62 -1.9
182,652 - AMB_RS00805 0.63 -1.9
182,652 - AMB_RS00805 0.63 -1.4
182,652 - AMB_RS00805 0.63 -0.3
182,652 - AMB_RS00805 0.63 +0.4
182,652 - AMB_RS00805 0.63 -1.5
182,652 - AMB_RS00805 0.63 -1.2
182,653 + AMB_RS00805 0.63 +0.4
182,653 + AMB_RS00805 0.63 -0.1
182,653 + AMB_RS00805 0.63 -0.3
182,653 + AMB_RS00805 0.63 -1.6
182,653 + AMB_RS00805 0.63 -2.4
182,654 - AMB_RS00805 0.63 +0.6
182,654 - AMB_RS00805 0.63 -1.6
182,654 - AMB_RS00805 0.63 -1.5
182,654 - AMB_RS00805 0.63 -2.6
182,654 - AMB_RS00805 0.63 +0.8
182,654 - AMB_RS00805 0.63 +1.2
182,654 - AMB_RS00805 0.63 +0.4
182,654 - AMB_RS00805 0.63 -1.2
182,654 - AMB_RS00805 0.63 -2.6
182,654 - AMB_RS00805 0.63 -1.2
182,654 - AMB_RS00805 0.63 -0.2
182,719 + AMB_RS00805 0.73 -2.2
182,719 + AMB_RS00805 0.73 -2.2
182,719 + AMB_RS00805 0.73 -2.9
182,719 + AMB_RS00805 0.73 -0.2
182,719 + AMB_RS00805 0.73 -1.9
182,719 + AMB_RS00805 0.73 -0.4
182,720 - AMB_RS00805 0.73 -1.2
182,720 - AMB_RS00805 0.73 -0.9
182,720 - AMB_RS00805 0.73 -0.9
182,720 - AMB_RS00805 0.73 +0.4
183,111 + AMB_RS00810 0.36 -0.9
183,111 + AMB_RS00810 0.36 -1.9
183,112 - AMB_RS00810 0.36 -1.3
183,112 - AMB_RS00810 0.36 -1.5
183,112 - AMB_RS00810 0.36 -1.2
183,112 - AMB_RS00810 0.36 -0.1
183,112 - AMB_RS00810 0.36 +0.0
183,112 - AMB_RS00810 0.36 +1.4
183,114 + AMB_RS00810 0.37 -1.9
183,115 - AMB_RS00810 0.37 +1.1
183,115 - AMB_RS00810 0.37 -0.2
183,115 - AMB_RS00810 0.37 -0.6
183,115 - AMB_RS00810 0.37 -2.0
183,174 + AMB_RS00810 0.46 -2.1
183,174 + AMB_RS00810 0.46 +0.1
183,175 - AMB_RS00810 0.46 -0.8
183,175 - AMB_RS00810 0.46 -0.5
183,175 - AMB_RS00810 0.46 -0.6
183,213 + AMB_RS00810 0.52 -1.7
183,213 + AMB_RS00810 0.52 -1.2
183,213 + AMB_RS00810 0.52 -0.3
183,214 - AMB_RS00810 0.52 -1.0
183,214 - AMB_RS00810 0.52 -0.8
183,538 + -2.4
183,538 + -1.9
183,538 + -0.4
183,539 - -1.9
183,539 - -0.2
183,631 + +0.3
183,632 - +1.4
183,632 - -0.7
183,632 - +0.4
183,632 - -0.6
183,632 - -0.5
183,632 - -1.3
183,658 + -0.9
183,658 + -1.2
183,658 + -0.9
183,715 + -1.1
183,761 + AMB_RS00815 0.11 -0.0
183,761 + AMB_RS00815 0.11 +0.7
183,761 + AMB_RS00815 0.11 -1.1
183,761 + AMB_RS00815 0.11 -0.6
183,761 + AMB_RS00815 0.11 -1.5
183,761 + AMB_RS00815 0.11 -0.7
183,761 + AMB_RS00815 0.11 +0.7
183,761 + AMB_RS00815 0.11 -0.7
183,762 - AMB_RS00815 0.11 -0.4
183,762 - AMB_RS00815 0.11 -1.4
184,133 + AMB_RS00815 0.44 -1.5
184,133 + AMB_RS00815 0.44 -1.6
184,133 + AMB_RS00815 0.44 -0.0
184,133 + AMB_RS00815 0.44 -2.3
184,133 + AMB_RS00815 0.44 -2.0
184,134 - AMB_RS00815 0.44 -1.2
184,134 - AMB_RS00815 0.44 -1.2
184,134 - AMB_RS00815 0.44 -1.6
184,338 - AMB_RS00815 0.63 -0.2
184,346 + AMB_RS00815 0.64 +0.4
184,346 + AMB_RS00815 0.64 +1.0
184,346 + AMB_RS00815 0.64 -1.2
184,346 + AMB_RS00815 0.64 +1.4
184,346 + AMB_RS00815 0.64 -1.1
184,346 + AMB_RS00815 0.64 -1.4
184,347 - AMB_RS00815 0.64 +0.2
184,410 - AMB_RS00815 0.69 -1.2
184,424 + AMB_RS00815 0.71 -1.4
184,424 + AMB_RS00815 0.71 -1.0
184,424 + AMB_RS00815 0.71 -1.1
184,424 + AMB_RS00815 0.71 -1.2
184,425 - AMB_RS00815 0.71 +0.4
184,454 + AMB_RS00815 0.73 -0.7
184,454 + AMB_RS00815 0.73 -1.4
184,454 + AMB_RS00815 0.73 +0.0
184,454 + AMB_RS00815 0.73 -2.2
184,454 + AMB_RS00815 0.73 -1.2
184,454 + AMB_RS00815 0.73 -2.2
184,454 + AMB_RS00815 0.73 -0.6
184,454 + AMB_RS00815 0.73 -0.4
184,454 + AMB_RS00815 0.73 -0.5
184,454 + AMB_RS00815 0.73 -2.2
184,454 + AMB_RS00815 0.73 -2.3
184,454 + AMB_RS00815 0.73 -0.2
184,454 + AMB_RS00815 0.73 -1.6
184,454 + AMB_RS00815 0.73 +0.4
184,454 + AMB_RS00815 0.73 -0.7
184,454 + AMB_RS00815 0.73 -0.1
184,455 - AMB_RS00815 0.73 +0.4
184,455 - AMB_RS00815 0.73 -2.3
184,455 - AMB_RS00815 0.73 -0.9
184,455 - AMB_RS00815 0.73 -0.3
184,455 - AMB_RS00815 0.73 -0.6
184,455 - AMB_RS00815 0.73 -0.0
184,456 + AMB_RS00815 0.74 -0.3
184,715 + -1.0
184,715 + -3.3
184,715 + -0.1
184,715 + -3.5
184,715 + -0.3
184,715 + +1.8
184,715 + -0.6
184,715 + -1.6
184,715 + -0.7
184,716 - -2.2
184,716 - -0.6
184,716 - -0.3
184,716 - -0.2
184,716 - +0.4
184,716 - -0.7
184,716 - +0.2
184,716 - -0.2
184,716 - -1.8
184,716 - -1.2
184,719 + -0.5
184,719 + +0.1
184,720 - -2.2
184,720 - -2.2
184,720 - +0.4
184,720 - -0.9
184,720 - -2.6
184,759 + -0.1
184,759 + +0.6
184,759 + -2.8
185,092 + AMB_RS00820 0.37 -1.4
185,093 - AMB_RS00820 0.37 -1.0
185,103 - AMB_RS00820 0.38 -2.2
185,278 + AMB_RS00820 0.56 -0.7
185,278 + AMB_RS00820 0.56 +2.0
185,278 + AMB_RS00820 0.56 +1.0
185,278 + AMB_RS00820 0.56 -0.4
185,279 - AMB_RS00820 0.56 +0.4
185,279 - AMB_RS00820 0.56 -0.6
185,279 - AMB_RS00820 0.56 -1.0
185,668 + +1.0
185,668 + +0.4
185,669 - +0.4
185,689 + -0.2
185,689 + -0.3
185,689 + -0.2
185,689 + -1.5
185,689 + -0.1

Or see this region's nucleotide sequence