Strain Fitness in Bosea sp. OAE506 around ABIE41_RS21490

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS21475 and ABIE41_RS21480 are separated by 41 nucleotidesABIE41_RS21480 and ABIE41_RS21485 are separated by 56 nucleotidesABIE41_RS21485 and ABIE41_RS21490 are separated by 42 nucleotidesABIE41_RS21490 and ABIE41_RS21495 overlap by 1 nucleotidesABIE41_RS21495 and ABIE41_RS21500 overlap by 4 nucleotides ABIE41_RS21475: ABIE41_RS21475 - response regulator transcription factor, at 4,416,886 to 4,417,554 _RS21475 ABIE41_RS21480: ABIE41_RS21480 - hypothetical protein, at 4,417,596 to 4,417,916 _RS21480 ABIE41_RS21485: ABIE41_RS21485 - hypothetical protein, at 4,417,973 to 4,418,446 _RS21485 ABIE41_RS21490: ABIE41_RS21490 - glycoside hydrolase/phage tail family protein, at 4,418,489 to 4,421,890 _RS21490 ABIE41_RS21495: ABIE41_RS21495 - NlpC/P60 family protein, at 4,421,890 to 4,422,333 _RS21495 ABIE41_RS21500: ABIE41_RS21500 - DUF2163 domain-containing protein, at 4,422,330 to 4,423,211 _RS21500 Position (kb) 4418 4419 4420 4421 4422Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4417.681 kb on + strand, within ABIE41_RS21480at 4417.681 kb on + strand, within ABIE41_RS21480at 4417.687 kb on + strand, within ABIE41_RS21480at 4417.687 kb on + strand, within ABIE41_RS21480at 4417.687 kb on + strand, within ABIE41_RS21480at 4417.687 kb on + strand, within ABIE41_RS21480at 4417.687 kb on + strand, within ABIE41_RS21480at 4417.687 kb on + strand, within ABIE41_RS21480at 4417.687 kb on + strand, within ABIE41_RS21480at 4417.687 kb on + strand, within ABIE41_RS21480at 4417.687 kb on + strand, within ABIE41_RS21480at 4417.687 kb on + strand, within ABIE41_RS21480at 4417.687 kb on + strand, within ABIE41_RS21480at 4417.688 kb on - strand, within ABIE41_RS21480at 4417.688 kb on - strand, within ABIE41_RS21480at 4417.688 kb on - strand, within ABIE41_RS21480at 4417.688 kb on - strand, within ABIE41_RS21480at 4417.688 kb on - strand, within ABIE41_RS21480at 4417.688 kb on - strand, within ABIE41_RS21480at 4417.688 kb on - strand, within ABIE41_RS21480at 4417.969 kb on + strandat 4417.969 kb on + strandat 4417.969 kb on + strandat 4417.969 kb on + strandat 4417.970 kb on - strandat 4417.970 kb on - strandat 4417.970 kb on - strandat 4417.970 kb on - strandat 4417.998 kb on + strandat 4417.998 kb on + strandat 4417.999 kb on - strandat 4417.999 kb on - strandat 4417.999 kb on - strandat 4418.252 kb on + strand, within ABIE41_RS21485at 4418.252 kb on + strand, within ABIE41_RS21485at 4418.252 kb on + strand, within ABIE41_RS21485at 4418.252 kb on + strand, within ABIE41_RS21485at 4418.253 kb on - strand, within ABIE41_RS21485at 4418.490 kb on + strandat 4418.669 kb on + strandat 4418.669 kb on + strandat 4418.669 kb on + strandat 4418.669 kb on + strandat 4418.669 kb on + strandat 4418.670 kb on - strandat 4418.670 kb on - strandat 4418.670 kb on - strandat 4418.670 kb on - strandat 4418.670 kb on - strandat 4418.670 kb on - strandat 4418.670 kb on - strandat 4418.671 kb on + strandat 4418.671 kb on + strandat 4418.671 kb on + strandat 4418.672 kb on - strandat 4418.672 kb on - strandat 4418.672 kb on - strandat 4418.672 kb on - strandat 4418.672 kb on - strandat 4418.675 kb on + strandat 4418.675 kb on + strandat 4418.676 kb on - strandat 4418.676 kb on - strandat 4418.833 kb on - strand, within ABIE41_RS21490at 4418.967 kb on + strand, within ABIE41_RS21490at 4418.968 kb on - strand, within ABIE41_RS21490at 4419.513 kb on + strand, within ABIE41_RS21490at 4419.513 kb on + strand, within ABIE41_RS21490at 4419.514 kb on - strand, within ABIE41_RS21490at 4419.514 kb on - strand, within ABIE41_RS21490at 4419.705 kb on + strand, within ABIE41_RS21490at 4419.705 kb on + strand, within ABIE41_RS21490at 4419.705 kb on + strand, within ABIE41_RS21490at 4419.706 kb on - strand, within ABIE41_RS21490at 4419.706 kb on - strand, within ABIE41_RS21490at 4419.706 kb on - strand, within ABIE41_RS21490at 4419.706 kb on - strand, within ABIE41_RS21490at 4419.987 kb on + strand, within ABIE41_RS21490at 4419.987 kb on + strand, within ABIE41_RS21490at 4419.988 kb on - strand, within ABIE41_RS21490at 4419.988 kb on - strand, within ABIE41_RS21490at 4419.988 kb on - strand, within ABIE41_RS21490at 4420.087 kb on - strand, within ABIE41_RS21490at 4420.144 kb on - strand, within ABIE41_RS21490at 4420.144 kb on - strand, within ABIE41_RS21490at 4420.153 kb on + strand, within ABIE41_RS21490at 4420.154 kb on - strand, within ABIE41_RS21490at 4420.155 kb on + strand, within ABIE41_RS21490at 4420.155 kb on + strand, within ABIE41_RS21490at 4420.155 kb on + strand, within ABIE41_RS21490at 4420.155 kb on + strand, within ABIE41_RS21490at 4420.155 kb on + strand, within ABIE41_RS21490at 4420.155 kb on + strand, within ABIE41_RS21490at 4420.155 kb on + strand, within ABIE41_RS21490at 4420.155 kb on + strand, within ABIE41_RS21490at 4420.155 kb on + strand, within ABIE41_RS21490at 4420.155 kb on + strand, within ABIE41_RS21490at 4420.156 kb on - strand, within ABIE41_RS21490at 4420.156 kb on - strand, within ABIE41_RS21490at 4420.189 kb on - strand, within ABIE41_RS21490at 4420.189 kb on - strand, within ABIE41_RS21490at 4420.383 kb on + strand, within ABIE41_RS21490at 4420.383 kb on + strand, within ABIE41_RS21490at 4420.383 kb on + strand, within ABIE41_RS21490at 4420.384 kb on - strand, within ABIE41_RS21490at 4420.384 kb on - strand, within ABIE41_RS21490at 4420.455 kb on + strand, within ABIE41_RS21490at 4420.549 kb on - strand, within ABIE41_RS21490at 4420.818 kb on + strand, within ABIE41_RS21490at 4420.819 kb on - strand, within ABIE41_RS21490at 4420.977 kb on - strand, within ABIE41_RS21490at 4421.017 kb on + strand, within ABIE41_RS21490at 4421.017 kb on + strand, within ABIE41_RS21490at 4421.017 kb on + strand, within ABIE41_RS21490at 4421.018 kb on - strand, within ABIE41_RS21490at 4421.134 kb on - strand, within ABIE41_RS21490at 4421.202 kb on + strand, within ABIE41_RS21490at 4421.343 kb on + strand, within ABIE41_RS21490at 4421.343 kb on + strand, within ABIE41_RS21490at 4421.344 kb on - strand, within ABIE41_RS21490at 4421.533 kb on - strand, within ABIE41_RS21490at 4421.535 kb on + strand, within ABIE41_RS21490at 4421.535 kb on + strand, within ABIE41_RS21490at 4421.535 kb on + strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.536 kb on - strand, within ABIE41_RS21490at 4421.541 kb on + strand, within ABIE41_RS21490at 4421.541 kb on + strand, within ABIE41_RS21490at 4421.541 kb on + strand, within ABIE41_RS21490at 4421.542 kb on - strand, within ABIE41_RS21490at 4421.542 kb on - strand, within ABIE41_RS21490at 4421.542 kb on - strand, within ABIE41_RS21490at 4421.542 kb on - strand, within ABIE41_RS21490at 4421.542 kb on - strand, within ABIE41_RS21490at 4421.542 kb on - strand, within ABIE41_RS21490at 4421.670 kb on + strandat 4422.269 kb on + strand, within ABIE41_RS21495at 4422.270 kb on - strand, within ABIE41_RS21495at 4422.270 kb on - strand, within ABIE41_RS21495at 4422.270 kb on - strand, within ABIE41_RS21495at 4422.407 kb on + strandat 4422.772 kb on + strand, within ABIE41_RS21500at 4422.772 kb on + strand, within ABIE41_RS21500at 4422.772 kb on + strand, within ABIE41_RS21500at 4422.773 kb on - strand, within ABIE41_RS21500at 4422.773 kb on - strand, within ABIE41_RS21500at 4422.773 kb on - strand, within ABIE41_RS21500

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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4,417,681 + ABIE41_RS21480 0.26 +1.7
4,417,681 + ABIE41_RS21480 0.26 +0.6
4,417,687 + ABIE41_RS21480 0.28 -2.9
4,417,687 + ABIE41_RS21480 0.28 +0.3
4,417,687 + ABIE41_RS21480 0.28 +1.0
4,417,687 + ABIE41_RS21480 0.28 +2.3
4,417,687 + ABIE41_RS21480 0.28 -1.0
4,417,687 + ABIE41_RS21480 0.28 -0.1
4,417,687 + ABIE41_RS21480 0.28 -1.8
4,417,687 + ABIE41_RS21480 0.28 +0.1
4,417,687 + ABIE41_RS21480 0.28 -1.5
4,417,687 + ABIE41_RS21480 0.28 -1.1
4,417,687 + ABIE41_RS21480 0.28 +0.3
4,417,688 - ABIE41_RS21480 0.29 -1.0
4,417,688 - ABIE41_RS21480 0.29 -1.1
4,417,688 - ABIE41_RS21480 0.29 -3.5
4,417,688 - ABIE41_RS21480 0.29 +1.1
4,417,688 - ABIE41_RS21480 0.29 -2.2
4,417,688 - ABIE41_RS21480 0.29 -0.4
4,417,688 - ABIE41_RS21480 0.29 -0.3
4,417,969 + -0.4
4,417,969 + -0.4
4,417,969 + -0.1
4,417,969 + +0.3
4,417,970 - -1.8
4,417,970 - +1.1
4,417,970 - +0.6
4,417,970 - +0.3
4,417,998 + -0.1
4,417,998 + +1.5
4,417,999 - -0.1
4,417,999 - -2.4
4,417,999 - +1.2
4,418,252 + ABIE41_RS21485 0.59 -0.5
4,418,252 + ABIE41_RS21485 0.59 +0.0
4,418,252 + ABIE41_RS21485 0.59 +0.2
4,418,252 + ABIE41_RS21485 0.59 -0.1
4,418,253 - ABIE41_RS21485 0.59 -0.8
4,418,490 + -0.2
4,418,669 + +0.2
4,418,669 + +1.2
4,418,669 + +0.3
4,418,669 + -0.3
4,418,669 + -0.2
4,418,670 - +0.0
4,418,670 - +1.0
4,418,670 - -0.1
4,418,670 - -0.5
4,418,670 - +0.2
4,418,670 - +0.0
4,418,670 - -0.4
4,418,671 + -0.4
4,418,671 + +0.1
4,418,671 + +0.7
4,418,672 - +0.8
4,418,672 - +3.8
4,418,672 - +1.5
4,418,672 - +0.8
4,418,672 - +0.0
4,418,675 + -0.2
4,418,675 + +0.3
4,418,676 - +0.3
4,418,676 - -3.5
4,418,833 - ABIE41_RS21490 0.10 -1.1
4,418,967 + ABIE41_RS21490 0.14 +0.5
4,418,968 - ABIE41_RS21490 0.14 +0.2
4,419,513 + ABIE41_RS21490 0.30 -0.8
4,419,513 + ABIE41_RS21490 0.30 -1.1
4,419,514 - ABIE41_RS21490 0.30 +0.5
4,419,514 - ABIE41_RS21490 0.30 +0.2
4,419,705 + ABIE41_RS21490 0.36 -1.1
4,419,705 + ABIE41_RS21490 0.36 +0.0
4,419,705 + ABIE41_RS21490 0.36 +0.6
4,419,706 - ABIE41_RS21490 0.36 +0.1
4,419,706 - ABIE41_RS21490 0.36 +0.0
4,419,706 - ABIE41_RS21490 0.36 +0.2
4,419,706 - ABIE41_RS21490 0.36 +0.9
4,419,987 + ABIE41_RS21490 0.44 -1.9
4,419,987 + ABIE41_RS21490 0.44 +0.4
4,419,988 - ABIE41_RS21490 0.44 -0.2
4,419,988 - ABIE41_RS21490 0.44 +0.5
4,419,988 - ABIE41_RS21490 0.44 -0.8
4,420,087 - ABIE41_RS21490 0.47 -0.6
4,420,144 - ABIE41_RS21490 0.49 +0.5
4,420,144 - ABIE41_RS21490 0.49 +0.6
4,420,153 + ABIE41_RS21490 0.49 -0.9
4,420,154 - ABIE41_RS21490 0.49 -0.1
4,420,155 + ABIE41_RS21490 0.49 +0.5
4,420,155 + ABIE41_RS21490 0.49 -2.8
4,420,155 + ABIE41_RS21490 0.49 +0.4
4,420,155 + ABIE41_RS21490 0.49 -2.0
4,420,155 + ABIE41_RS21490 0.49 +0.2
4,420,155 + ABIE41_RS21490 0.49 -0.8
4,420,155 + ABIE41_RS21490 0.49 -0.8
4,420,155 + ABIE41_RS21490 0.49 -0.4
4,420,155 + ABIE41_RS21490 0.49 -0.3
4,420,155 + ABIE41_RS21490 0.49 -1.3
4,420,156 - ABIE41_RS21490 0.49 +0.8
4,420,156 - ABIE41_RS21490 0.49 +0.4
4,420,189 - ABIE41_RS21490 0.50 -1.4
4,420,189 - ABIE41_RS21490 0.50 +0.1
4,420,383 + ABIE41_RS21490 0.56 +0.3
4,420,383 + ABIE41_RS21490 0.56 +1.3
4,420,383 + ABIE41_RS21490 0.56 +0.9
4,420,384 - ABIE41_RS21490 0.56 -0.9
4,420,384 - ABIE41_RS21490 0.56 -2.6
4,420,455 + ABIE41_RS21490 0.58 +0.1
4,420,549 - ABIE41_RS21490 0.61 +0.4
4,420,818 + ABIE41_RS21490 0.68 -0.1
4,420,819 - ABIE41_RS21490 0.68 +2.5
4,420,977 - ABIE41_RS21490 0.73 -0.4
4,421,017 + ABIE41_RS21490 0.74 +0.0
4,421,017 + ABIE41_RS21490 0.74 +0.8
4,421,017 + ABIE41_RS21490 0.74 +2.4
4,421,018 - ABIE41_RS21490 0.74 +0.5
4,421,134 - ABIE41_RS21490 0.78 -1.5
4,421,202 + ABIE41_RS21490 0.80 -1.3
4,421,343 + ABIE41_RS21490 0.84 -1.6
4,421,343 + ABIE41_RS21490 0.84 -1.0
4,421,344 - ABIE41_RS21490 0.84 -0.3
4,421,533 - ABIE41_RS21490 0.89 -0.6
4,421,535 + ABIE41_RS21490 0.90 -1.8
4,421,535 + ABIE41_RS21490 0.90 -0.2
4,421,535 + ABIE41_RS21490 0.90 +0.8
4,421,536 - ABIE41_RS21490 0.90 +1.0
4,421,536 - ABIE41_RS21490 0.90 -1.5
4,421,536 - ABIE41_RS21490 0.90 +0.5
4,421,536 - ABIE41_RS21490 0.90 -0.1
4,421,536 - ABIE41_RS21490 0.90 +0.7
4,421,536 - ABIE41_RS21490 0.90 -0.1
4,421,536 - ABIE41_RS21490 0.90 +0.4
4,421,536 - ABIE41_RS21490 0.90 -2.2
4,421,536 - ABIE41_RS21490 0.90 -0.0
4,421,536 - ABIE41_RS21490 0.90 -1.2
4,421,541 + ABIE41_RS21490 0.90 -0.8
4,421,541 + ABIE41_RS21490 0.90 +0.3
4,421,541 + ABIE41_RS21490 0.90 -0.5
4,421,542 - ABIE41_RS21490 0.90 -0.4
4,421,542 - ABIE41_RS21490 0.90 -1.1
4,421,542 - ABIE41_RS21490 0.90 -0.4
4,421,542 - ABIE41_RS21490 0.90 -0.9
4,421,542 - ABIE41_RS21490 0.90 +1.0
4,421,542 - ABIE41_RS21490 0.90 -0.8
4,421,670 + -0.4
4,422,269 + ABIE41_RS21495 0.85 -1.0
4,422,270 - ABIE41_RS21495 0.86 -0.6
4,422,270 - ABIE41_RS21495 0.86 -0.4
4,422,270 - ABIE41_RS21495 0.86 -0.1
4,422,407 + +0.1
4,422,772 + ABIE41_RS21500 0.50 -0.5
4,422,772 + ABIE41_RS21500 0.50 +0.6
4,422,772 + ABIE41_RS21500 0.50 +1.3
4,422,773 - ABIE41_RS21500 0.50 +1.2
4,422,773 - ABIE41_RS21500 0.50 +0.2
4,422,773 - ABIE41_RS21500 0.50 -1.1

Or see this region's nucleotide sequence