Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20465

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20460 and ABIE41_RS20465 are separated by 82 nucleotidesABIE41_RS20465 and ABIE41_RS20470 are separated by 296 nucleotides ABIE41_RS20460: ABIE41_RS20460 - aminotransferase class III-fold pyridoxal phosphate-dependent enzyme, at 4,204,862 to 4,206,190 _RS20460 ABIE41_RS20465: ABIE41_RS20465 - phosphotransferase, at 4,206,273 to 4,207,301 _RS20465 ABIE41_RS20470: ABIE41_RS20470 - MFS transporter, at 4,207,598 to 4,208,944 _RS20470 Position (kb) 4206 4207 4208Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4205.582 kb on - strand, within ABIE41_RS20460at 4205.736 kb on + strand, within ABIE41_RS20460at 4205.736 kb on + strand, within ABIE41_RS20460at 4205.736 kb on + strand, within ABIE41_RS20460at 4205.736 kb on + strand, within ABIE41_RS20460at 4205.737 kb on - strand, within ABIE41_RS20460at 4205.742 kb on + strand, within ABIE41_RS20460at 4205.742 kb on + strand, within ABIE41_RS20460at 4205.742 kb on + strand, within ABIE41_RS20460at 4205.742 kb on + strand, within ABIE41_RS20460at 4205.742 kb on + strand, within ABIE41_RS20460at 4205.742 kb on + strand, within ABIE41_RS20460at 4205.743 kb on - strand, within ABIE41_RS20460at 4205.743 kb on - strand, within ABIE41_RS20460at 4205.743 kb on - strand, within ABIE41_RS20460at 4205.743 kb on - strand, within ABIE41_RS20460at 4205.743 kb on - strand, within ABIE41_RS20460at 4205.743 kb on - strand, within ABIE41_RS20460at 4205.904 kb on + strand, within ABIE41_RS20460at 4206.007 kb on - strand, within ABIE41_RS20460at 4206.027 kb on + strand, within ABIE41_RS20460at 4206.073 kb on - strandat 4206.084 kb on + strandat 4206.198 kb on - strandat 4206.198 kb on - strandat 4206.208 kb on + strandat 4206.208 kb on + strandat 4206.209 kb on - strandat 4206.303 kb on + strandat 4206.304 kb on - strandat 4206.371 kb on + strandat 4206.371 kb on + strandat 4206.372 kb on - strandat 4206.373 kb on + strandat 4206.374 kb on - strandat 4206.409 kb on + strand, within ABIE41_RS20465at 4206.499 kb on + strand, within ABIE41_RS20465at 4207.198 kb on + strand, within ABIE41_RS20465at 4207.198 kb on + strand, within ABIE41_RS20465at 4207.198 kb on + strand, within ABIE41_RS20465at 4207.198 kb on + strand, within ABIE41_RS20465at 4207.198 kb on + strand, within ABIE41_RS20465at 4207.199 kb on - strandat 4207.199 kb on - strandat 4207.199 kb on - strandat 4207.199 kb on - strandat 4207.282 kb on + strandat 4207.282 kb on + strandat 4207.476 kb on + strandat 4207.626 kb on - strandat 4207.626 kb on - strandat 4207.667 kb on - strandat 4207.769 kb on + strand, within ABIE41_RS20470at 4207.769 kb on + strand, within ABIE41_RS20470at 4207.770 kb on - strand, within ABIE41_RS20470at 4207.770 kb on - strand, within ABIE41_RS20470at 4207.770 kb on - strand, within ABIE41_RS20470at 4207.770 kb on - strand, within ABIE41_RS20470at 4207.901 kb on + strand, within ABIE41_RS20470at 4207.901 kb on + strand, within ABIE41_RS20470at 4207.901 kb on + strand, within ABIE41_RS20470at 4207.901 kb on + strand, within ABIE41_RS20470at 4207.901 kb on + strand, within ABIE41_RS20470at 4207.901 kb on + strand, within ABIE41_RS20470at 4207.902 kb on - strand, within ABIE41_RS20470at 4207.902 kb on - strand, within ABIE41_RS20470at 4207.902 kb on - strand, within ABIE41_RS20470at 4207.902 kb on - strand, within ABIE41_RS20470at 4207.994 kb on + strand, within ABIE41_RS20470at 4207.996 kb on + strand, within ABIE41_RS20470at 4207.996 kb on + strand, within ABIE41_RS20470at 4207.996 kb on + strand, within ABIE41_RS20470at 4207.996 kb on + strand, within ABIE41_RS20470at 4207.997 kb on - strand, within ABIE41_RS20470at 4207.997 kb on - strand, within ABIE41_RS20470at 4207.997 kb on - strand, within ABIE41_RS20470at 4208.028 kb on - strand, within ABIE41_RS20470at 4208.087 kb on + strand, within ABIE41_RS20470at 4208.087 kb on + strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.088 kb on - strand, within ABIE41_RS20470at 4208.195 kb on + strand, within ABIE41_RS20470at 4208.225 kb on + strand, within ABIE41_RS20470at 4208.226 kb on - strand, within ABIE41_RS20470

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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4,205,582 - ABIE41_RS20460 0.54 -1.4
4,205,736 + ABIE41_RS20460 0.66 -1.9
4,205,736 + ABIE41_RS20460 0.66 +0.1
4,205,736 + ABIE41_RS20460 0.66 -0.3
4,205,736 + ABIE41_RS20460 0.66 -0.6
4,205,737 - ABIE41_RS20460 0.66 +0.0
4,205,742 + ABIE41_RS20460 0.66 +1.8
4,205,742 + ABIE41_RS20460 0.66 +0.9
4,205,742 + ABIE41_RS20460 0.66 -1.5
4,205,742 + ABIE41_RS20460 0.66 -1.4
4,205,742 + ABIE41_RS20460 0.66 -1.7
4,205,742 + ABIE41_RS20460 0.66 +1.0
4,205,743 - ABIE41_RS20460 0.66 -0.1
4,205,743 - ABIE41_RS20460 0.66 -2.3
4,205,743 - ABIE41_RS20460 0.66 -2.5
4,205,743 - ABIE41_RS20460 0.66 -1.1
4,205,743 - ABIE41_RS20460 0.66 -2.0
4,205,743 - ABIE41_RS20460 0.66 -0.3
4,205,904 + ABIE41_RS20460 0.78 -0.5
4,206,007 - ABIE41_RS20460 0.86 -2.3
4,206,027 + ABIE41_RS20460 0.88 +0.2
4,206,073 - +1.7
4,206,084 + +0.4
4,206,198 - -1.6
4,206,198 - -0.3
4,206,208 + +1.6
4,206,208 + -0.2
4,206,209 - +0.1
4,206,303 + +0.2
4,206,304 - -2.2
4,206,371 + -1.0
4,206,371 + -0.3
4,206,372 - +0.4
4,206,373 + -2.1
4,206,374 - +1.2
4,206,409 + ABIE41_RS20465 0.13 -0.0
4,206,499 + ABIE41_RS20465 0.22 -0.3
4,207,198 + ABIE41_RS20465 0.90 -0.9
4,207,198 + ABIE41_RS20465 0.90 +0.4
4,207,198 + ABIE41_RS20465 0.90 -0.4
4,207,198 + ABIE41_RS20465 0.90 +0.0
4,207,198 + ABIE41_RS20465 0.90 -0.3
4,207,199 - +0.7
4,207,199 - +0.2
4,207,199 - -0.4
4,207,199 - -0.2
4,207,282 + +0.3
4,207,282 + -0.5
4,207,476 + -0.3
4,207,626 - +0.5
4,207,626 - -1.8
4,207,667 - -0.0
4,207,769 + ABIE41_RS20470 0.13 -0.9
4,207,769 + ABIE41_RS20470 0.13 -0.9
4,207,770 - ABIE41_RS20470 0.13 +1.4
4,207,770 - ABIE41_RS20470 0.13 -2.1
4,207,770 - ABIE41_RS20470 0.13 -1.0
4,207,770 - ABIE41_RS20470 0.13 +0.1
4,207,901 + ABIE41_RS20470 0.22 +0.3
4,207,901 + ABIE41_RS20470 0.22 -0.1
4,207,901 + ABIE41_RS20470 0.22 -2.7
4,207,901 + ABIE41_RS20470 0.22 -1.4
4,207,901 + ABIE41_RS20470 0.22 +0.6
4,207,901 + ABIE41_RS20470 0.22 +1.8
4,207,902 - ABIE41_RS20470 0.23 +1.1
4,207,902 - ABIE41_RS20470 0.23 +1.0
4,207,902 - ABIE41_RS20470 0.23 -1.4
4,207,902 - ABIE41_RS20470 0.23 +0.6
4,207,994 + ABIE41_RS20470 0.29 +0.6
4,207,996 + ABIE41_RS20470 0.30 +0.2
4,207,996 + ABIE41_RS20470 0.30 -3.1
4,207,996 + ABIE41_RS20470 0.30 -0.2
4,207,996 + ABIE41_RS20470 0.30 -1.9
4,207,997 - ABIE41_RS20470 0.30 -0.2
4,207,997 - ABIE41_RS20470 0.30 -0.4
4,207,997 - ABIE41_RS20470 0.30 -0.4
4,208,028 - ABIE41_RS20470 0.32 -0.2
4,208,087 + ABIE41_RS20470 0.36 -1.0
4,208,087 + ABIE41_RS20470 0.36 -1.7
4,208,088 - ABIE41_RS20470 0.36 +0.3
4,208,088 - ABIE41_RS20470 0.36 -0.2
4,208,088 - ABIE41_RS20470 0.36 +0.7
4,208,088 - ABIE41_RS20470 0.36 +0.4
4,208,088 - ABIE41_RS20470 0.36 -0.7
4,208,195 + ABIE41_RS20470 0.44 -0.3
4,208,225 + ABIE41_RS20470 0.47 -0.5
4,208,226 - ABIE41_RS20470 0.47 +2.0

Or see this region's nucleotide sequence