Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17845

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17835 and ABIE41_RS17840 overlap by 1 nucleotidesABIE41_RS17840 and ABIE41_RS17845 are separated by 4 nucleotidesABIE41_RS17845 and ABIE41_RS17850 are separated by 401 nucleotidesABIE41_RS17850 and ABIE41_RS17855 overlap by 4 nucleotides ABIE41_RS17835: ABIE41_RS17835 - peptidylprolyl isomerase, at 3,674,740 to 3,675,210 _RS17835 ABIE41_RS17840: ABIE41_RS17840 - hypothetical protein, at 3,675,210 to 3,675,878 _RS17840 ABIE41_RS17845: ABIE41_RS17845 - peptidylprolyl isomerase, at 3,675,883 to 3,676,437 _RS17845 ABIE41_RS17850: ABIE41_RS17850 - DUF1467 family protein, at 3,676,839 to 3,677,069 _RS17850 ABIE41_RS17855: ABIE41_RS17855 - RidA family protein, at 3,677,066 to 3,677,476 _RS17855 Position (kb) 3675 3676 3677Strain fitness (log2 ratio) -3 -2 -1 0 1at 3675.227 kb on + strandat 3675.305 kb on + strand, within ABIE41_RS17840at 3675.305 kb on + strand, within ABIE41_RS17840at 3675.305 kb on + strand, within ABIE41_RS17840at 3675.306 kb on - strand, within ABIE41_RS17840at 3675.306 kb on - strand, within ABIE41_RS17840at 3675.686 kb on - strand, within ABIE41_RS17840at 3675.884 kb on + strandat 3675.885 kb on - strandat 3676.014 kb on - strand, within ABIE41_RS17845at 3676.043 kb on + strand, within ABIE41_RS17845at 3676.115 kb on + strand, within ABIE41_RS17845at 3676.115 kb on + strand, within ABIE41_RS17845at 3676.238 kb on + strand, within ABIE41_RS17845at 3676.707 kb on - strandat 3676.865 kb on - strand, within ABIE41_RS17850at 3677.191 kb on - strand, within ABIE41_RS17855at 3677.191 kb on - strand, within ABIE41_RS17855at 3677.211 kb on + strand, within ABIE41_RS17855at 3677.211 kb on + strand, within ABIE41_RS17855at 3677.212 kb on - strand, within ABIE41_RS17855at 3677.212 kb on - strand, within ABIE41_RS17855

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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3,675,227 + -2.4
3,675,305 + ABIE41_RS17840 0.14 -1.7
3,675,305 + ABIE41_RS17840 0.14 -1.7
3,675,305 + ABIE41_RS17840 0.14 -0.3
3,675,306 - ABIE41_RS17840 0.14 -0.1
3,675,306 - ABIE41_RS17840 0.14 -0.8
3,675,686 - ABIE41_RS17840 0.71 -0.4
3,675,884 + -0.5
3,675,885 - +0.4
3,676,014 - ABIE41_RS17845 0.24 +0.7
3,676,043 + ABIE41_RS17845 0.29 +1.0
3,676,115 + ABIE41_RS17845 0.42 +0.2
3,676,115 + ABIE41_RS17845 0.42 +0.2
3,676,238 + ABIE41_RS17845 0.64 -3.0
3,676,707 - -1.5
3,676,865 - ABIE41_RS17850 0.11 +0.3
3,677,191 - ABIE41_RS17855 0.30 -0.1
3,677,191 - ABIE41_RS17855 0.30 +1.1
3,677,211 + ABIE41_RS17855 0.35 -2.9
3,677,211 + ABIE41_RS17855 0.35 -2.7
3,677,212 - ABIE41_RS17855 0.36 -0.1
3,677,212 - ABIE41_RS17855 0.36 -0.2

Or see this region's nucleotide sequence