Strain Fitness in Bosea sp. OAE506 around ABIE41_RS07770

Experiment: Fumarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS07760 and ABIE41_RS07765 are separated by 80 nucleotidesABIE41_RS07765 and ABIE41_RS07770 are separated by 7 nucleotidesABIE41_RS07770 and ABIE41_RS07775 are separated by 31 nucleotidesABIE41_RS07775 and ABIE41_RS07780 are separated by 197 nucleotides ABIE41_RS07760: ABIE41_RS07760 - tripartite tricarboxylate transporter substrate binding protein, at 1,592,535 to 1,593,530 _RS07760 ABIE41_RS07765: ABIE41_RS07765 - tripartite tricarboxylate transporter TctB family protein, at 1,593,611 to 1,594,102 _RS07765 ABIE41_RS07770: ABIE41_RS07770 - tripartite tricarboxylate transporter permease, at 1,594,110 to 1,595,615 _RS07770 ABIE41_RS07775: ABIE41_RS07775 - enoyl-CoA hydratase-related protein, at 1,595,647 to 1,596,390 _RS07775 ABIE41_RS07780: ABIE41_RS07780 - 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein, at 1,596,588 to 1,598,669 _RS07780 Position (kb) 1594 1595 1596Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1593.294 kb on + strand, within ABIE41_RS07760at 1593.294 kb on + strand, within ABIE41_RS07760at 1593.294 kb on + strand, within ABIE41_RS07760at 1593.295 kb on - strand, within ABIE41_RS07760at 1593.295 kb on - strand, within ABIE41_RS07760at 1593.295 kb on - strand, within ABIE41_RS07760at 1593.399 kb on + strand, within ABIE41_RS07760at 1593.399 kb on + strand, within ABIE41_RS07760at 1593.399 kb on + strand, within ABIE41_RS07760at 1593.400 kb on - strand, within ABIE41_RS07760at 1593.595 kb on + strandat 1593.596 kb on - strandat 1593.596 kb on - strandat 1593.596 kb on - strandat 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.671 kb on + strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.672 kb on - strand, within ABIE41_RS07765at 1593.674 kb on + strand, within ABIE41_RS07765at 1593.675 kb on - strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.908 kb on + strand, within ABIE41_RS07765at 1593.909 kb on - strand, within ABIE41_RS07765at 1593.909 kb on - strand, within ABIE41_RS07765at 1593.909 kb on - strand, within ABIE41_RS07765at 1594.189 kb on - strandat 1594.189 kb on - strandat 1594.263 kb on + strand, within ABIE41_RS07770at 1594.263 kb on + strand, within ABIE41_RS07770at 1594.263 kb on + strand, within ABIE41_RS07770at 1594.263 kb on + strand, within ABIE41_RS07770at 1594.263 kb on + strand, within ABIE41_RS07770at 1594.263 kb on + strand, within ABIE41_RS07770at 1594.263 kb on + strand, within ABIE41_RS07770at 1594.264 kb on - strand, within ABIE41_RS07770at 1594.264 kb on - strand, within ABIE41_RS07770at 1594.264 kb on - strand, within ABIE41_RS07770at 1594.264 kb on - strand, within ABIE41_RS07770at 1594.264 kb on - strand, within ABIE41_RS07770at 1594.381 kb on - strand, within ABIE41_RS07770at 1594.381 kb on - strand, within ABIE41_RS07770at 1594.381 kb on - strand, within ABIE41_RS07770at 1594.381 kb on - strand, within ABIE41_RS07770at 1594.381 kb on - strand, within ABIE41_RS07770at 1594.381 kb on - strand, within ABIE41_RS07770at 1594.395 kb on + strand, within ABIE41_RS07770at 1594.395 kb on + strand, within ABIE41_RS07770at 1594.536 kb on + strand, within ABIE41_RS07770at 1594.536 kb on + strand, within ABIE41_RS07770at 1594.536 kb on + strand, within ABIE41_RS07770at 1594.536 kb on + strand, within ABIE41_RS07770at 1594.536 kb on + strand, within ABIE41_RS07770at 1594.537 kb on - strand, within ABIE41_RS07770at 1594.537 kb on - strand, within ABIE41_RS07770at 1594.851 kb on + strand, within ABIE41_RS07770at 1594.852 kb on - strand, within ABIE41_RS07770at 1594.941 kb on + strand, within ABIE41_RS07770at 1594.941 kb on + strand, within ABIE41_RS07770at 1594.942 kb on - strand, within ABIE41_RS07770at 1594.942 kb on - strand, within ABIE41_RS07770at 1594.942 kb on - strand, within ABIE41_RS07770at 1595.115 kb on + strand, within ABIE41_RS07770at 1595.116 kb on - strand, within ABIE41_RS07770at 1595.116 kb on - strand, within ABIE41_RS07770at 1595.116 kb on - strand, within ABIE41_RS07770at 1595.116 kb on - strand, within ABIE41_RS07770at 1595.116 kb on - strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.172 kb on + strand, within ABIE41_RS07770at 1595.173 kb on - strand, within ABIE41_RS07770at 1595.173 kb on - strand, within ABIE41_RS07770at 1595.173 kb on - strand, within ABIE41_RS07770at 1595.173 kb on - strand, within ABIE41_RS07770at 1595.173 kb on - strand, within ABIE41_RS07770at 1595.173 kb on - strand, within ABIE41_RS07770at 1595.173 kb on - strand, within ABIE41_RS07770at 1595.173 kb on - strand, within ABIE41_RS07770at 1595.173 kb on - strand, within ABIE41_RS07770at 1595.173 kb on - strand, within ABIE41_RS07770at 1595.181 kb on + strand, within ABIE41_RS07770at 1595.182 kb on - strand, within ABIE41_RS07770at 1595.349 kb on + strand, within ABIE41_RS07770at 1595.349 kb on + strand, within ABIE41_RS07770at 1595.349 kb on + strand, within ABIE41_RS07770at 1595.349 kb on + strand, within ABIE41_RS07770at 1595.350 kb on - strand, within ABIE41_RS07770at 1595.350 kb on - strand, within ABIE41_RS07770at 1595.350 kb on - strand, within ABIE41_RS07770at 1595.350 kb on - strand, within ABIE41_RS07770at 1595.350 kb on - strand, within ABIE41_RS07770at 1595.350 kb on - strand, within ABIE41_RS07770at 1595.350 kb on - strand, within ABIE41_RS07770at 1595.392 kb on - strand, within ABIE41_RS07770at 1595.967 kb on - strand, within ABIE41_RS07775at 1595.967 kb on - strand, within ABIE41_RS07775at 1596.293 kb on + strand, within ABIE41_RS07775at 1596.293 kb on + strand, within ABIE41_RS07775at 1596.293 kb on + strand, within ABIE41_RS07775at 1596.294 kb on - strand, within ABIE41_RS07775at 1596.294 kb on - strand, within ABIE41_RS07775at 1596.587 kb on + strandat 1596.587 kb on + strandat 1596.588 kb on - strandat 1596.588 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
remove
1,593,294 + ABIE41_RS07760 0.76 -0.8
1,593,294 + ABIE41_RS07760 0.76 -0.2
1,593,294 + ABIE41_RS07760 0.76 -2.2
1,593,295 - ABIE41_RS07760 0.76 +0.1
1,593,295 - ABIE41_RS07760 0.76 +0.2
1,593,295 - ABIE41_RS07760 0.76 +0.5
1,593,399 + ABIE41_RS07760 0.87 +0.4
1,593,399 + ABIE41_RS07760 0.87 +0.5
1,593,399 + ABIE41_RS07760 0.87 +1.7
1,593,400 - ABIE41_RS07760 0.87 -0.8
1,593,595 + -1.4
1,593,596 - -2.5
1,593,596 - -0.3
1,593,596 - +0.5
1,593,671 + ABIE41_RS07765 0.12 -1.0
1,593,671 + ABIE41_RS07765 0.12 +0.3
1,593,671 + ABIE41_RS07765 0.12 -3.6
1,593,671 + ABIE41_RS07765 0.12 +0.4
1,593,671 + ABIE41_RS07765 0.12 -1.0
1,593,671 + ABIE41_RS07765 0.12 -0.5
1,593,671 + ABIE41_RS07765 0.12 -0.0
1,593,671 + ABIE41_RS07765 0.12 +0.4
1,593,672 - ABIE41_RS07765 0.12 +1.4
1,593,672 - ABIE41_RS07765 0.12 -0.2
1,593,672 - ABIE41_RS07765 0.12 -0.2
1,593,672 - ABIE41_RS07765 0.12 -0.4
1,593,672 - ABIE41_RS07765 0.12 -1.2
1,593,672 - ABIE41_RS07765 0.12 -0.3
1,593,672 - ABIE41_RS07765 0.12 -1.0
1,593,672 - ABIE41_RS07765 0.12 -0.5
1,593,672 - ABIE41_RS07765 0.12 -0.4
1,593,672 - ABIE41_RS07765 0.12 -2.3
1,593,674 + ABIE41_RS07765 0.13 -0.2
1,593,675 - ABIE41_RS07765 0.13 +0.6
1,593,908 + ABIE41_RS07765 0.60 -0.2
1,593,908 + ABIE41_RS07765 0.60 +0.3
1,593,908 + ABIE41_RS07765 0.60 +0.1
1,593,908 + ABIE41_RS07765 0.60 -1.2
1,593,908 + ABIE41_RS07765 0.60 -0.4
1,593,908 + ABIE41_RS07765 0.60 -1.3
1,593,908 + ABIE41_RS07765 0.60 -0.2
1,593,909 - ABIE41_RS07765 0.61 -3.0
1,593,909 - ABIE41_RS07765 0.61 +1.1
1,593,909 - ABIE41_RS07765 0.61 -0.3
1,594,189 - -0.1
1,594,189 - -0.8
1,594,263 + ABIE41_RS07770 0.10 -1.8
1,594,263 + ABIE41_RS07770 0.10 -0.4
1,594,263 + ABIE41_RS07770 0.10 +0.1
1,594,263 + ABIE41_RS07770 0.10 -1.3
1,594,263 + ABIE41_RS07770 0.10 +3.9
1,594,263 + ABIE41_RS07770 0.10 +0.5
1,594,263 + ABIE41_RS07770 0.10 +0.1
1,594,264 - ABIE41_RS07770 0.10 +1.6
1,594,264 - ABIE41_RS07770 0.10 +1.6
1,594,264 - ABIE41_RS07770 0.10 +1.1
1,594,264 - ABIE41_RS07770 0.10 -0.3
1,594,264 - ABIE41_RS07770 0.10 +1.2
1,594,381 - ABIE41_RS07770 0.18 +1.8
1,594,381 - ABIE41_RS07770 0.18 -0.8
1,594,381 - ABIE41_RS07770 0.18 -0.1
1,594,381 - ABIE41_RS07770 0.18 +0.2
1,594,381 - ABIE41_RS07770 0.18 -0.4
1,594,381 - ABIE41_RS07770 0.18 -0.0
1,594,395 + ABIE41_RS07770 0.19 +0.6
1,594,395 + ABIE41_RS07770 0.19 +0.2
1,594,536 + ABIE41_RS07770 0.28 -1.4
1,594,536 + ABIE41_RS07770 0.28 -0.4
1,594,536 + ABIE41_RS07770 0.28 +0.2
1,594,536 + ABIE41_RS07770 0.28 +0.2
1,594,536 + ABIE41_RS07770 0.28 +0.4
1,594,537 - ABIE41_RS07770 0.28 +0.4
1,594,537 - ABIE41_RS07770 0.28 +0.6
1,594,851 + ABIE41_RS07770 0.49 +0.0
1,594,852 - ABIE41_RS07770 0.49 -0.4
1,594,941 + ABIE41_RS07770 0.55 -0.8
1,594,941 + ABIE41_RS07770 0.55 +0.1
1,594,942 - ABIE41_RS07770 0.55 -0.3
1,594,942 - ABIE41_RS07770 0.55 +0.9
1,594,942 - ABIE41_RS07770 0.55 +0.6
1,595,115 + ABIE41_RS07770 0.67 -0.0
1,595,116 - ABIE41_RS07770 0.67 +0.0
1,595,116 - ABIE41_RS07770 0.67 +1.6
1,595,116 - ABIE41_RS07770 0.67 -0.3
1,595,116 - ABIE41_RS07770 0.67 +0.8
1,595,116 - ABIE41_RS07770 0.67 +0.1
1,595,172 + ABIE41_RS07770 0.71 +0.1
1,595,172 + ABIE41_RS07770 0.71 +1.2
1,595,172 + ABIE41_RS07770 0.71 -1.0
1,595,172 + ABIE41_RS07770 0.71 +0.5
1,595,172 + ABIE41_RS07770 0.71 +1.1
1,595,172 + ABIE41_RS07770 0.71 -0.4
1,595,172 + ABIE41_RS07770 0.71 -1.8
1,595,172 + ABIE41_RS07770 0.71 -1.9
1,595,172 + ABIE41_RS07770 0.71 +0.9
1,595,172 + ABIE41_RS07770 0.71 -2.8
1,595,172 + ABIE41_RS07770 0.71 +0.3
1,595,172 + ABIE41_RS07770 0.71 +1.1
1,595,172 + ABIE41_RS07770 0.71 +0.2
1,595,172 + ABIE41_RS07770 0.71 +1.3
1,595,173 - ABIE41_RS07770 0.71 -0.2
1,595,173 - ABIE41_RS07770 0.71 -3.5
1,595,173 - ABIE41_RS07770 0.71 -0.5
1,595,173 - ABIE41_RS07770 0.71 -0.2
1,595,173 - ABIE41_RS07770 0.71 -2.8
1,595,173 - ABIE41_RS07770 0.71 +0.1
1,595,173 - ABIE41_RS07770 0.71 +2.6
1,595,173 - ABIE41_RS07770 0.71 -0.8
1,595,173 - ABIE41_RS07770 0.71 +0.7
1,595,173 - ABIE41_RS07770 0.71 -0.7
1,595,181 + ABIE41_RS07770 0.71 -0.8
1,595,182 - ABIE41_RS07770 0.71 -0.8
1,595,349 + ABIE41_RS07770 0.82 +0.4
1,595,349 + ABIE41_RS07770 0.82 -0.4
1,595,349 + ABIE41_RS07770 0.82 +0.9
1,595,349 + ABIE41_RS07770 0.82 -0.0
1,595,350 - ABIE41_RS07770 0.82 -0.6
1,595,350 - ABIE41_RS07770 0.82 +0.2
1,595,350 - ABIE41_RS07770 0.82 -1.3
1,595,350 - ABIE41_RS07770 0.82 -0.1
1,595,350 - ABIE41_RS07770 0.82 +0.6
1,595,350 - ABIE41_RS07770 0.82 -0.0
1,595,350 - ABIE41_RS07770 0.82 +0.2
1,595,392 - ABIE41_RS07770 0.85 +0.6
1,595,967 - ABIE41_RS07775 0.43 -0.0
1,595,967 - ABIE41_RS07775 0.43 +0.2
1,596,293 + ABIE41_RS07775 0.87 -0.0
1,596,293 + ABIE41_RS07775 0.87 -0.6
1,596,293 + ABIE41_RS07775 0.87 +0.1
1,596,294 - ABIE41_RS07775 0.87 -0.2
1,596,294 - ABIE41_RS07775 0.87 +1.1
1,596,587 + +1.8
1,596,587 + +0.1
1,596,588 - +1.0
1,596,588 - +1.0

Or see this region's nucleotide sequence