Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04590

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04580 and ABIE41_RS04585 overlap by 1 nucleotidesABIE41_RS04585 and ABIE41_RS04590 are separated by 225 nucleotidesABIE41_RS04590 and ABIE41_RS04595 are separated by 266 nucleotides ABIE41_RS04580: ABIE41_RS04580 - Ku protein, at 956,094 to 956,999 _RS04580 ABIE41_RS04585: ABIE41_RS04585 - hypothetical protein, at 956,999 to 957,223 _RS04585 ABIE41_RS04590: ABIE41_RS04590 - 30S ribosomal protein S15, at 957,449 to 957,718 _RS04590 ABIE41_RS04595: ABIE41_RS04595 - polyribonucleotide nucleotidyltransferase, at 957,985 to 960,153 _RS04595 Position (kb) 957 958Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 956.495 kb on - strand, within ABIE41_RS04580at 956.560 kb on + strand, within ABIE41_RS04580at 956.659 kb on + strand, within ABIE41_RS04580at 956.659 kb on + strand, within ABIE41_RS04580at 956.659 kb on + strand, within ABIE41_RS04580at 956.659 kb on + strand, within ABIE41_RS04580at 956.659 kb on + strand, within ABIE41_RS04580at 956.659 kb on + strand, within ABIE41_RS04580at 956.660 kb on - strand, within ABIE41_RS04580at 956.660 kb on - strand, within ABIE41_RS04580at 956.660 kb on - strand, within ABIE41_RS04580at 956.661 kb on - strand, within ABIE41_RS04580at 956.662 kb on + strand, within ABIE41_RS04580at 956.663 kb on - strand, within ABIE41_RS04580at 956.663 kb on - strand, within ABIE41_RS04580at 956.677 kb on + strand, within ABIE41_RS04580at 956.677 kb on + strand, within ABIE41_RS04580at 956.677 kb on + strand, within ABIE41_RS04580at 956.677 kb on + strand, within ABIE41_RS04580at 956.677 kb on + strand, within ABIE41_RS04580at 956.678 kb on - strand, within ABIE41_RS04580at 956.678 kb on - strand, within ABIE41_RS04580at 956.678 kb on - strand, within ABIE41_RS04580at 956.678 kb on - strand, within ABIE41_RS04580at 956.678 kb on - strand, within ABIE41_RS04580at 956.779 kb on + strand, within ABIE41_RS04580at 956.779 kb on + strand, within ABIE41_RS04580at 956.780 kb on - strand, within ABIE41_RS04580at 956.780 kb on - strand, within ABIE41_RS04580at 956.800 kb on + strand, within ABIE41_RS04580at 956.801 kb on - strand, within ABIE41_RS04580at 956.801 kb on - strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.854 kb on + strand, within ABIE41_RS04580at 956.855 kb on - strand, within ABIE41_RS04580at 956.855 kb on - strand, within ABIE41_RS04580at 956.855 kb on - strand, within ABIE41_RS04580at 956.855 kb on - strand, within ABIE41_RS04580at 956.871 kb on - strand, within ABIE41_RS04580at 956.971 kb on + strandat 956.972 kb on - strandat 957.315 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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956,495 - ABIE41_RS04580 0.44 +0.9
956,560 + ABIE41_RS04580 0.51 -0.9
956,659 + ABIE41_RS04580 0.62 -1.3
956,659 + ABIE41_RS04580 0.62 -1.8
956,659 + ABIE41_RS04580 0.62 -0.0
956,659 + ABIE41_RS04580 0.62 -1.8
956,659 + ABIE41_RS04580 0.62 +0.4
956,659 + ABIE41_RS04580 0.62 +0.0
956,660 - ABIE41_RS04580 0.62 -0.2
956,660 - ABIE41_RS04580 0.62 -0.8
956,660 - ABIE41_RS04580 0.62 -1.8
956,661 - ABIE41_RS04580 0.63 -0.0
956,662 + ABIE41_RS04580 0.63 -0.9
956,663 - ABIE41_RS04580 0.63 +1.1
956,663 - ABIE41_RS04580 0.63 -1.4
956,677 + ABIE41_RS04580 0.64 +0.1
956,677 + ABIE41_RS04580 0.64 -0.1
956,677 + ABIE41_RS04580 0.64 -1.8
956,677 + ABIE41_RS04580 0.64 +0.4
956,677 + ABIE41_RS04580 0.64 -0.3
956,678 - ABIE41_RS04580 0.64 +0.3
956,678 - ABIE41_RS04580 0.64 -1.3
956,678 - ABIE41_RS04580 0.64 +0.8
956,678 - ABIE41_RS04580 0.64 +0.6
956,678 - ABIE41_RS04580 0.64 -1.4
956,779 + ABIE41_RS04580 0.76 +0.7
956,779 + ABIE41_RS04580 0.76 -0.7
956,780 - ABIE41_RS04580 0.76 +0.3
956,780 - ABIE41_RS04580 0.76 +1.3
956,800 + ABIE41_RS04580 0.78 +0.7
956,801 - ABIE41_RS04580 0.78 -0.6
956,801 - ABIE41_RS04580 0.78 -0.5
956,854 + ABIE41_RS04580 0.84 -1.0
956,854 + ABIE41_RS04580 0.84 -0.8
956,854 + ABIE41_RS04580 0.84 +0.0
956,854 + ABIE41_RS04580 0.84 -0.3
956,854 + ABIE41_RS04580 0.84 +0.0
956,854 + ABIE41_RS04580 0.84 +1.9
956,854 + ABIE41_RS04580 0.84 +0.1
956,855 - ABIE41_RS04580 0.84 +0.3
956,855 - ABIE41_RS04580 0.84 -0.0
956,855 - ABIE41_RS04580 0.84 +1.2
956,855 - ABIE41_RS04580 0.84 +0.4
956,871 - ABIE41_RS04580 0.86 -2.9
956,971 + +1.1
956,972 - +0.7
957,315 + +0.2

Or see this region's nucleotide sequence