Strain Fitness in Bosea sp. OAE506 around ABIE41_RS02525

Experiment: Fumarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS02520 and ABIE41_RS02525 are separated by 211 nucleotidesABIE41_RS02525 and ABIE41_RS02530 are separated by 28 nucleotidesABIE41_RS02530 and ABIE41_RS02535 are separated by 2 nucleotides ABIE41_RS02520: ABIE41_RS02520 - OmpA family protein, at 504,458 to 505,648 _RS02520 ABIE41_RS02525: ABIE41_RS02525 - adenylate/guanylate cyclase domain-containing protein, at 505,860 to 507,749 _RS02525 ABIE41_RS02530: ABIE41_RS02530 - Crp/Fnr family transcriptional regulator, at 507,778 to 508,476 _RS02530 ABIE41_RS02535: ABIE41_RS02535 - FecR family protein, at 508,479 to 509,138 _RS02535 Position (kb) 505 506 507 508Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 504.900 kb on + strand, within ABIE41_RS02520at 504.901 kb on - strand, within ABIE41_RS02520at 504.957 kb on + strand, within ABIE41_RS02520at 504.993 kb on + strand, within ABIE41_RS02520at 504.993 kb on + strand, within ABIE41_RS02520at 504.993 kb on + strand, within ABIE41_RS02520at 504.994 kb on - strand, within ABIE41_RS02520at 504.994 kb on - strand, within ABIE41_RS02520at 504.994 kb on - strand, within ABIE41_RS02520at 504.994 kb on - strand, within ABIE41_RS02520at 504.995 kb on - strand, within ABIE41_RS02520at 505.044 kb on + strand, within ABIE41_RS02520at 505.093 kb on + strand, within ABIE41_RS02520at 505.093 kb on + strand, within ABIE41_RS02520at 505.094 kb on - strand, within ABIE41_RS02520at 505.094 kb on - strand, within ABIE41_RS02520at 505.095 kb on + strand, within ABIE41_RS02520at 505.095 kb on + strand, within ABIE41_RS02520at 505.095 kb on + strand, within ABIE41_RS02520at 505.095 kb on + strand, within ABIE41_RS02520at 505.095 kb on + strand, within ABIE41_RS02520at 505.096 kb on - strand, within ABIE41_RS02520at 505.096 kb on - strand, within ABIE41_RS02520at 505.096 kb on - strand, within ABIE41_RS02520at 505.096 kb on - strand, within ABIE41_RS02520at 505.163 kb on + strand, within ABIE41_RS02520at 505.163 kb on + strand, within ABIE41_RS02520at 505.163 kb on + strand, within ABIE41_RS02520at 505.163 kb on + strand, within ABIE41_RS02520at 505.163 kb on + strand, within ABIE41_RS02520at 505.163 kb on + strand, within ABIE41_RS02520at 505.163 kb on + strand, within ABIE41_RS02520at 505.164 kb on - strand, within ABIE41_RS02520at 505.200 kb on + strand, within ABIE41_RS02520at 505.200 kb on + strand, within ABIE41_RS02520at 505.201 kb on - strand, within ABIE41_RS02520at 505.201 kb on - strand, within ABIE41_RS02520at 505.499 kb on + strand, within ABIE41_RS02520at 505.500 kb on - strand, within ABIE41_RS02520at 505.500 kb on - strand, within ABIE41_RS02520at 505.500 kb on - strand, within ABIE41_RS02520at 505.500 kb on - strand, within ABIE41_RS02520at 505.500 kb on - strand, within ABIE41_RS02520at 506.042 kb on - strandat 506.149 kb on + strand, within ABIE41_RS02525at 506.261 kb on + strand, within ABIE41_RS02525at 506.262 kb on - strand, within ABIE41_RS02525at 506.262 kb on - strand, within ABIE41_RS02525at 506.262 kb on - strand, within ABIE41_RS02525at 506.312 kb on - strand, within ABIE41_RS02525at 506.357 kb on + strand, within ABIE41_RS02525at 506.357 kb on + strand, within ABIE41_RS02525at 506.381 kb on - strand, within ABIE41_RS02525at 506.447 kb on + strand, within ABIE41_RS02525at 506.447 kb on + strand, within ABIE41_RS02525at 506.447 kb on + strand, within ABIE41_RS02525at 506.448 kb on - strand, within ABIE41_RS02525at 506.448 kb on - strand, within ABIE41_RS02525at 506.448 kb on - strand, within ABIE41_RS02525at 507.049 kb on + strand, within ABIE41_RS02525at 507.524 kb on + strand, within ABIE41_RS02525at 507.524 kb on + strand, within ABIE41_RS02525at 507.652 kb on - strandat 507.749 kb on + strandat 508.028 kb on + strand, within ABIE41_RS02530at 508.032 kb on - strand, within ABIE41_RS02530at 508.429 kb on - strandat 508.702 kb on + strand, within ABIE41_RS02535at 508.702 kb on + strand, within ABIE41_RS02535at 508.702 kb on + strand, within ABIE41_RS02535at 508.703 kb on - strand, within ABIE41_RS02535at 508.703 kb on - strand, within ABIE41_RS02535at 508.703 kb on - strand, within ABIE41_RS02535at 508.703 kb on - strand, within ABIE41_RS02535

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Per-strain Table

Position Strand Gene LocusTag Fraction Fumarate (C)
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504,900 + ABIE41_RS02520 0.37 -1.0
504,901 - ABIE41_RS02520 0.37 +0.2
504,957 + ABIE41_RS02520 0.42 -2.2
504,993 + ABIE41_RS02520 0.45 -0.5
504,993 + ABIE41_RS02520 0.45 -1.5
504,993 + ABIE41_RS02520 0.45 +0.3
504,994 - ABIE41_RS02520 0.45 +0.5
504,994 - ABIE41_RS02520 0.45 -0.7
504,994 - ABIE41_RS02520 0.45 +0.9
504,994 - ABIE41_RS02520 0.45 -0.4
504,995 - ABIE41_RS02520 0.45 +0.6
505,044 + ABIE41_RS02520 0.49 +0.5
505,093 + ABIE41_RS02520 0.53 -3.7
505,093 + ABIE41_RS02520 0.53 +0.8
505,094 - ABIE41_RS02520 0.53 -1.3
505,094 - ABIE41_RS02520 0.53 +1.0
505,095 + ABIE41_RS02520 0.53 -0.3
505,095 + ABIE41_RS02520 0.53 +0.3
505,095 + ABIE41_RS02520 0.53 -0.0
505,095 + ABIE41_RS02520 0.53 +0.0
505,095 + ABIE41_RS02520 0.53 -1.6
505,096 - ABIE41_RS02520 0.54 +1.5
505,096 - ABIE41_RS02520 0.54 +0.2
505,096 - ABIE41_RS02520 0.54 -0.5
505,096 - ABIE41_RS02520 0.54 -0.2
505,163 + ABIE41_RS02520 0.59 +0.3
505,163 + ABIE41_RS02520 0.59 +2.1
505,163 + ABIE41_RS02520 0.59 -0.5
505,163 + ABIE41_RS02520 0.59 +0.3
505,163 + ABIE41_RS02520 0.59 -0.0
505,163 + ABIE41_RS02520 0.59 -2.3
505,163 + ABIE41_RS02520 0.59 -0.2
505,164 - ABIE41_RS02520 0.59 -1.5
505,200 + ABIE41_RS02520 0.62 +1.4
505,200 + ABIE41_RS02520 0.62 +0.3
505,201 - ABIE41_RS02520 0.62 +0.2
505,201 - ABIE41_RS02520 0.62 +0.3
505,499 + ABIE41_RS02520 0.87 +0.7
505,500 - ABIE41_RS02520 0.87 +0.3
505,500 - ABIE41_RS02520 0.87 +0.2
505,500 - ABIE41_RS02520 0.87 -0.5
505,500 - ABIE41_RS02520 0.87 +0.0
505,500 - ABIE41_RS02520 0.87 +0.6
506,042 - +1.2
506,149 + ABIE41_RS02525 0.15 +0.3
506,261 + ABIE41_RS02525 0.21 +0.1
506,262 - ABIE41_RS02525 0.21 -1.5
506,262 - ABIE41_RS02525 0.21 -0.2
506,262 - ABIE41_RS02525 0.21 +1.5
506,312 - ABIE41_RS02525 0.24 -0.7
506,357 + ABIE41_RS02525 0.26 +0.0
506,357 + ABIE41_RS02525 0.26 -0.7
506,381 - ABIE41_RS02525 0.28 -0.8
506,447 + ABIE41_RS02525 0.31 -0.0
506,447 + ABIE41_RS02525 0.31 -1.3
506,447 + ABIE41_RS02525 0.31 +0.3
506,448 - ABIE41_RS02525 0.31 -1.5
506,448 - ABIE41_RS02525 0.31 +0.3
506,448 - ABIE41_RS02525 0.31 -2.2
507,049 + ABIE41_RS02525 0.63 +0.4
507,524 + ABIE41_RS02525 0.88 -0.1
507,524 + ABIE41_RS02525 0.88 -1.9
507,652 - -2.3
507,749 + +0.1
508,028 + ABIE41_RS02530 0.36 +0.2
508,032 - ABIE41_RS02530 0.36 +0.5
508,429 - +1.6
508,702 + ABIE41_RS02535 0.34 -0.2
508,702 + ABIE41_RS02535 0.34 +1.7
508,702 + ABIE41_RS02535 0.34 +0.1
508,703 - ABIE41_RS02535 0.34 -0.1
508,703 - ABIE41_RS02535 0.34 -0.7
508,703 - ABIE41_RS02535 0.34 -0.1
508,703 - ABIE41_RS02535 0.34 -2.2

Or see this region's nucleotide sequence